Array 1 3652-4717 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTSY01000019.1 Streptomyces sp. Tu 4128 NODE_23_length_4684_cov_37.583904, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3652 29 100.0 32 ............................. GGCGGCCATCCGCGCAGTGATCTGGCTCGTCT 3713 29 96.6 32 .......T..................... AGAGGAGACTGGCCAGACTTAGCCAGCGTGCT 3774 29 100.0 32 ............................. GGGCCCGCCGCCCGGGAGGCATTGAACGCGCT 3835 29 100.0 32 ............................. CCCGACCACGAAGGAGGAGCGATGAACGCTCC 3896 29 96.6 32 ................T............ CGCAGGTCACAGGCTTGCGGATTGGGAACGAA 3957 29 100.0 32 ............................. GGGTCGGCGGAGGGCGACGGGGTGTACCGGCG 4018 29 96.6 32 ..........................T.. GAGGGCGAGCCCGAGGCCCAGGCCGGATAAGG 4079 29 100.0 32 ............................. CAGGCCCACAGCTCCGGCTCCGGGGTGGCCTG 4140 29 100.0 32 ............................. TTCCTCGGCGGGCCGGTGCTCGGCTCGATCGA 4201 29 96.6 32 ...........G................. TACCTCTTCATTCAGGCCAACAAGGCTGAAGA 4262 29 100.0 32 ............................. GACGCGTACCGCGGAGGGCAGTTCACCGCGGA 4323 29 100.0 32 ............................. GGACTGCGACTGCATGTCGCCTGCACACGGTT 4384 29 100.0 32 ............................. GCGGGCGCCAGGCAGGCCAGGCCGCCGCCGTC 4445 29 100.0 32 ............................. GCCACCGACATTCGCGGCAACGCGGTGTCCCA 4506 29 100.0 32 ............................. CGGATACGGCCGGCGACGTCGGTCTGCCCGGC 4567 29 96.6 32 .....................T....... GCGGCCACCGGCGAGGACGCGAGGAACCTGTG 4628 29 96.6 32 ..............T.............. GATCATGACCACCGTCGAGCGGGTGGCAGTGG 4689 29 89.7 0 ...........G............CA... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.3 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CTCCCAGCGCCACTTTCGCTTGAATGAGGGGTGCCGCTCCCAGATGTTGGCCATGCGGAGCAGCGGCTCGCACTCAGCACCGTCGATGGGGCACGCTTCTACGGCGATCGTCTCGCCGTTCTCCTCTGCAGGCTGGAGAACTGGCTTGTGGTTCGCGACTGTCCACCGCAGGTAGCCGGTGAAGTCGAGTACGTGGGCCGGGTCGTTCAGCACGACGAAGGCGGCCCGCTCCCGGGTGCCGGCATCGAAGTTAGGTCCCTCCGGTCCGGCGAGGATCAACGTCTCGAACTCATCGTCGGCGCCGCCTGCCCCCTGGTACCAGACCGCCGGCCATTCGCCGTCAAGATTCGGCTGCACCGCGTGGCCGATCTTGCTCTCCTCAGTGATGCGCCTGGCGAGGAAGTCGTGCACCTCTTGCAACATGCCCACTGCTGACCCCTCCCGGGCTCGATCTGACCTGCCGCCAACTTTACCGACAACAATTGGACTTATTGTCGGCT # Right flank : AACCCCGGCGTGTGGGTCATGTCCTAACCGGCTGCTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8160-10125 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTSY01000011.1 Streptomyces sp. Tu 4128 NODE_11_length_49665_cov_36.540199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 8160 29 89.7 32 ....A.........T..A........... CTGACGCAGGGCGTCCTCGCCCTGTTCCTCGC 8221 29 86.2 13 .........A...A....A.....A.... GGGAGCCTTGCTA Deletion [8263] 8263 29 96.6 32 ...T......................... CCCGACCTGCCGGGGCTGGTGCCGCTGGGCGT 8324 29 93.1 32 .....T........T.............. TTCAACAACGACGTGCCCTACGACCGGCAGAA 8385 28 96.6 32 ........-.................... GGCACCCCGCTCGCCCCCTCCTTCCCGGAAGT 8445 29 96.6 32 ............................T TTGATCGCCGAGGGCCCTGCCGGTCTGTACGT 8506 28 89.7 1 ..................A......-..A T Deletion [8535] 8535 29 86.2 32 .C...T......G.A.............. CTCATGAAGGGCTTCGACCGCGGCCACATGGC 8596 29 93.1 32 .G..........A................ GGCAGGGTGAACGTGCCGTAGTCCCGCCCGTT 8657 28 89.7 32 T............G...-........... GCCCTTATGGCGTCCCACCCGGACCTTCCGGC 8717 29 93.1 29 .A...........T............... GGTCGGAGGATCATCCCATCACGACGTCG 8775 29 89.7 31 G........A...........T....... CGCTCGACGTCCTGCGGCCGCTCGATCTTGC C,G [8784,8792] 8838 29 93.1 32 .........A...T............... CAGGTGGCGCCGCTGCTGGCGGCCGGGATGAG 8899 29 93.1 32 ...T...................A..... GGACCGTCCGTCCGGCACCCCGGGCACCGCTC 8960 29 96.6 32 ...G......................... CCGGTGCCGTCGGTGCGGCCGCAGCCCCGGAC 9021 29 100.0 32 ............................. CGCCGGGCGTACGCGCGGGCCCCGCCGGCATC 9082 29 96.6 32 ...........G................. GCCATCATCCCCTCAGCCGCGTTCGCCATCCG 9143 29 96.6 32 .................A........... TCGTCTCCCCCGTCCGCGGCGACGTCGACGCC 9204 29 96.6 32 ......T...................... CCGACCCCGAGGTTTCTCGTGACGGACAGGTG 9265 28 93.1 32 .....T..-.................... CGCTCCTCCTCGGCCTCGTCGGCCCAGAAAAC 9325 29 96.6 32 ....................A........ GAGCCCAACTCCGGCCACCGCTCCTTCTGAAA 9386 29 93.1 32 ..A....................C..... TCGACGATCTCGTCGATCCGGTCCCGGCACCG 9447 29 96.6 35 T............................ CACACGAACGGCTGTATTGCACGACCTCGGCTGCT 9511 29 93.1 32 .................A.......G... GCGAACCGTGTGGTCTCGGCCTCACCGTGCTG C [9523] 9573 28 89.7 9 .......T..-......A........... ACGTCCGGG Deletion [9610] 9611 29 86.2 32 .G.AGT....................... CCGAGCGCTCTCGGGAGCACGGAGTGGTCGGA 9672 29 86.2 32 ..............T.T....G.A..... AAGAAGGCGTTCGCCCAGCGCTGGGCCCGCTC 9733 29 100.0 32 ............................. AAGGGCATGGGGCTGCTGCTTCAGTCGCTCAT 9794 29 100.0 32 ............................. ACGGTCGACGTCGGCGCCGCCCTGTTCGTTCA 9855 29 100.0 32 ............................. GACTGCCGCTGCCGCGTGGTCAAGCGGGGACG 9916 29 100.0 32 ............................. ACCGCGCGGCCTGCCTTGGAGCTGCGGATCCG 9977 29 96.6 29 T............................ GGCGCCGCGGGCAACGGGACTGAGATGCC 10035 29 93.1 31 ........T....T............... CGGGTCACTGAGTGCGGAAGGAGTGGCTCGA 10095 29 82.8 0 ...................TCT.C....A | CC [10113] ========== ====== ====== ====== ============================= =================================== ================== 34 29 93.5 30 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TCGACCGACCTCTGCCGGACGACCCGCTCAACGCGCCGTAGCCCGTGGTCGAGTACCTGGCCGCGCAGCTCGTATACGGGTGCCGGGCGGGTCGATGCGGACTGCGCCCGCAGGGATAATCCCGGCGTGGCCGCAGCCGGCGGACGGCCCTCCACCTGCTCCCCGCACTCGCGGGGATGGTCCCTGGACGCCGTACTCGTTGATGGTCTCCAGCAGCTGCTCCCCGCACCCGCAGGGATGGTCCCACGTGCCCGTTGACCAGCATCTGATCGTCGGCCTGCTCCCCGCACCCGCGGGGATGGTCCCAACGCGTACGCGCTCGACCTCACGGTGTCGTCCTGTTCCCCTTCCCGCGGAGATGGTCCCGGCCGCTGATGACCCCCGCTGGTGCCACAGGGCTGCTCCCCGCACCCGCGGGGATGGCCCCTCTTCAGCCCGCTCCTCGCGGTCCCAGTGACCCGGCCCCCCACCCGCTGTGGCCTGCCGAGGTCGTGCCCGAG # Right flank : AGTGACCGACGCGGGGAAGCTGCGCCTCGTGCGGTACACGGCCGGCGTCTCCACGACCGACCTCATCCGACGGTGTCTACAGCGGACCCTCGTCAGGGACGGCGACCTCATGAACCCGTCGCCCCCGTCCTGTGCTCACCGGTAGCCATCGGGCTCATGCCCTCCGGCAAGTCGGCCCATCGCGGGCAGGAGGCTGTCCCCTGGCCAGAAAGGCTGCTCGGTAGTGACAGCGGCCAGAAGCTCGCCGACTTCGTCTAACACCGCGGCGCGCTGTGCAGAGCCGTAGGTGACGAGATCGTCGGTCGTCGTGTCAAAGACGCGGACCAGGCCCTGTGGTCCCGTGCACAGCAGGACGCGTGCCAGCTCGGATAGGCCCAGACGGAGGGCGTCGCACCGCCCTGTGTGAACGAGTTCCAGCAGGTCGAGGGTGACGCCCTCCCAGTCGGCGACGCTAGGCCAGTGGGCGCCGCCGTTCAGCTCGTGGGTGAGGGTGGCCAGCG # Questionable array : NO Score: 4.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.19, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2321-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTSY01000029.1 Streptomyces sp. Tu 4128 NODE_39_length_4675_cov_37.028877, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2320 29 79.3 32 .CC.....T..C...A...........T. ACCGACCTGATGTCGGAGACGGCGAGGGACGC 2259 29 100.0 32 ............................. GTCGGCCACCACCGCGACGGCGCCGAGTGCGA 2198 29 93.1 32 ..............T..A........... AGGTACTCGGGTCGCGCCCACCGCACCCGCGC 2137 29 93.1 32 ............T............A... ATGCCGGCCGCCTACTTCGGTTGCATGATCTG 2076 28 89.7 34 ........-.....A.........A.... TCCTCGGGGTGGCCGACGAGTGCTGTGTCATGAG 2014 29 100.0 32 ............................. AGCGCCGGCACCGACGTGACCGGCGCCATGCT 1953 29 100.0 32 ............................. GCGAAGTGGATCCGGGCGATCGGCCGGCCCGC 1892 29 96.6 32 ............................T TTCACCAGGCCGATGGCCTCGACGTCGCCCAT 1831 29 100.0 32 ............................. AACGCCGACAACGTCAGGGCCGCACTCAACGG 1770 29 100.0 32 ............................. GCCTCCGTCTTCATCGCCGGGGAGTCCTCGAG 1709 29 100.0 32 ............................. GAAGGCGACGCCAACAAGTTCCTCGGCTACAA 1648 29 100.0 32 ............................. CACTGGACTCCGGTCTGCGCTGCCCATTCATC 1587 29 100.0 32 ............................. GCTGTTGTCCGGCCTTGCAACGGCCCTCACCA 1526 29 100.0 32 ............................. ACCCCGGGCGTCCAGCAGTACACCGGTCTCGC 1465 29 100.0 32 ............................. CCGGTGCAGACACGGATGCGGGCGAAGAAGGT 1404 29 100.0 32 ............................. ATGTCGAGGGCCGACTCGACGGTGACGATCGG 1343 29 100.0 32 ............................. ATGCCGGCGGCCTCGGCCCACACCAGGGGCCA 1282 29 100.0 32 ............................. GGCTCGAGGAGCTGGAGGACCCGGTTGGGCAC 1221 29 100.0 32 ............................. GCGTGCAGCGCCTCGCCGGGTACGCGGGTCTG 1160 29 100.0 32 ............................. CCGCCCACCACAGGAGCGAACATGACCGGCCA 1099 29 100.0 32 ............................. CAGGTGACGCCGCTGCTGGCGGCCGGGATGAA 1038 29 89.7 32 .........A..T..C............. TCGGCGCGCAGAGCCCTGCCCCGCTCCTCCGC 977 29 100.0 32 ............................. CAGAAAGGCACCACCAGCACATGACCGCCAAC 916 29 100.0 32 ............................. ACCACGCGGAAGGACCTGCGCGGCCTCGCCAA 855 29 96.6 32 .....T....................... GCCATCACGGCAGTCTGCACCGCCTCGGCCAC 794 28 86.2 32 ...T........T..-..........T.. GGCGACCAGCTCAAGATGCGGCCCCCCGCATA 734 29 96.6 32 ............T................ GAAGATGCCCATCCCGTTCACGGTCTCGACCA 673 29 93.1 32 G...........T................ AAGGCCGCCGCGGCGGCCGGCCAGCTGGTCAA 612 29 96.6 29 .....................G....... GAGGGGGCGCCCCGGGTGCACAGCTCCCG 554 29 96.6 32 ..................C.......... GACAACGAGCACGCAGAGCACGCCAGTGCGAG 493 29 100.0 32 ............................. TCGGTACGCGGCTCCGGGCCCACCGGCATCGG 432 29 100.0 32 ............................. AAGTCCCACACGGCGGGATACGGCCTGGTCAG 371 29 100.0 32 ............................. GTTGCGAAGATCGAGTCCGAGCGGGGGCCGCC 310 29 100.0 32 ............................. CAGTCGTTCGACTGGACGATCCTCCACCACGA 249 29 93.1 32 .......T...................G. GAGTAGCCCACGTCGGACCAGCCGTTGCCGTC 188 29 100.0 32 ............................. ACCACCTCACGGAACTGCTTGATGCGGGCCTT 127 29 100.0 32 ............................. ACGCTGCCGGTCGAGGACGGCGGTACTGGTGG 66 29 89.7 0 ...........G............CA... | ========== ====== ====== ====== ============================= ================================== ================== 38 29 97.1 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCGAGTGCTCCGCGTACGTCAGCCAAGATGCATCGACCGCCTCTTTGCCCTTAACGATTACGTGCTGTGACGGAGCATGACGCTAGCAAGCGGGAGGTGACCGCGTGAGGGATTGGATGACATCAACTCTGCGTTCACAAATATGAGTTACGAGGTTCCGCTCGCCGTCCCTGCCTCCTTCGCCGTGCTGCAGGTTCGGCTCCTTCCGGGGCTGCCTCTCGCCTCGGTCCAGAGGCTGGATAGATCACGACAGACCGGAAGGCCGCCGAGACGGCGGCACGACCCGCAGCACCTCCCATGCGGTCGCGTCCCCACTGCCCATTCCTTCGGTGTCGTCCTGGCCGTGATCGGCGTCCGGCAAGGCCCTCGAGCGACGTTGAACAGCCTCCCGCACCATGAGTGCCCGGCCGGCCGTTGCTGGCCTCATGTCCTGTTTGCCGGAATCTTTGAACCTTACTGAAAGCATGCCTCTGAGGCCGTAAACTTGCAGGTCAAGCAGT # Right flank : CAACCCCGGCGTGTGGGTCATGTCCTAACCGGCTGCTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [14-14] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //