Array 1 1275976-1277465 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086001.1 Streptococcus thermophilus LMD-9 strain FDAARGOS_1574 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1275976 36 100.0 30 .................................... AATACGTGAGTTTGGCACTCTTGACGTGGC 1276042 36 100.0 30 .................................... CACAGTTGAGATACCGAATCCGAATAGCAT 1276108 36 100.0 30 .................................... TTAATTCAACGATTTTACGAGCTTTCTTTT 1276174 36 100.0 30 .................................... AGAAAGACTTCAACAGTCCAGAGAAAATAA 1276240 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 1276306 36 100.0 30 .................................... AACGACTGCACAGCGGCAGTATGGGTGAAT 1276372 36 100.0 30 .................................... TGATGAAGTCAACATCACAGACACAGGGAA 1276438 36 100.0 30 .................................... ACCTAACACACTTGTGTGTCCGTAGCTTCC 1276504 36 100.0 30 .................................... GCCAAACAAAAACAGAAATGATGAAGCGGA 1276570 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 1276636 36 100.0 30 .................................... AAAATGGAATTCCTGTTGATATGGTTAACT 1276702 36 100.0 30 .................................... CACTAGCAATGCCTTGCAAGGCTGCCCCAA 1276768 36 100.0 30 .................................... CTTCAATTGAATTGAGTATCTCGAGATAAG 1276834 36 100.0 30 .................................... TTATTAGTTTTGATATGCCACAAAATAATT 1276900 36 100.0 30 .................................... CATCACAGATACCGGAAACGGTGGTTATTA 1276966 36 100.0 32 .................................... CTTAAGAGTTACCCTCTTAATGGTCTTAAGTA 1277034 36 100.0 30 .................................... CATAGGTCATAATAACTTCATCGGTTGGAA 1277100 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 1277166 36 100.0 30 .................................... AACAGGTAGTAGATGGAATATTAAAGAAAT 1277232 36 100.0 30 .................................... TTCATTTCTTCCTCAACCTCATACCCAAAC 1277298 36 100.0 30 .................................... ACGTTCTTCGCTAGTTCTTCTAGCATAAGC 1277364 36 100.0 30 .................................... ACATCTGGAACGGTAGCACCAACGAATGGT 1277430 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 23 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATTTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTGATGTTATGACGAAATCGTCAGTATTTTTTGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 2042298-2039955 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086001.1 Streptococcus thermophilus LMD-9 strain FDAARGOS_1574 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2042297 36 100.0 30 .................................... ATATACGGACTCATCTAGTGAAACTGGGTA 2042231 36 100.0 30 .................................... GAATCTGTTAAAACATTGATTTTTTATATT 2042165 36 100.0 30 .................................... TGTGCCAGCGTCATTCAAAGCAATTGCTGA 2042099 36 100.0 30 .................................... CAAAGCTATCGAATATATCGCAGAGGCAAG 2042033 36 100.0 30 .................................... TCTTTGTGATATAAATGAAAAAAAAGACTA 2041967 36 100.0 30 .................................... CAAGCGTAAGTTTTACCGTTAGAACGTTCA 2041901 36 100.0 29 .................................... GATAGCGCCTTTGAATATTAATGGTGTTC 2041836 36 100.0 30 .................................... TAGACTTTACTAATTCTCAAGTAAATATAT 2041770 36 100.0 30 .................................... TTCTTTCAGGTATGAAATTAGAAACACTTG 2041704 36 100.0 30 .................................... TTTCACAGTCAACACATCTCCGACACGCTT 2041638 36 100.0 30 .................................... ATGAGTTGGTAGATGTTAAAGCATCAACTG 2041572 36 100.0 30 .................................... GTATATACAGAACTTGGAGTTTTAACGCCT 2041506 36 100.0 30 .................................... CATACACCACCAGCAAAGTCTTTACCAATG 2041440 36 100.0 30 .................................... GATGATTTTGAGTTTAAGGTTTTTAAACAA 2041374 36 100.0 29 .................................... AGACCATGAAGGAAGGCGTTGACAAATTC 2041309 36 100.0 30 .................................... AGAAATTCATGATAAGTGGTCTGAAACTTG 2041243 36 100.0 30 .................................... AGTCAACTTACTATGTTAAAATAAGACAGG 2041177 36 100.0 30 .................................... GACTTGAACCTGAATTAATCAAGGTAGCCA 2041111 36 100.0 30 .................................... TGTACTCTATTGATTGCTTCATCTTTATTA 2041045 36 100.0 31 .................................... CTTTCAAGATACTCATCAACCATTGATGTCA 2040978 36 100.0 30 .................................... AAAAGGTGCGTATGAAACTCATCCCAGCGG 2040912 36 100.0 30 .................................... CTATGTCTTTACTGTTCTTCCAAAACCACC 2040846 36 100.0 30 .................................... TTTGTTTGCGTTCACTTAGTTTATACTGAG 2040780 36 100.0 30 .................................... AATTTGTCATTGACATTTACCACCGTCCTG 2040714 36 100.0 29 .................................... TGGCGCAATGGTTTTAAATCATATGCCTT 2040649 36 100.0 30 .................................... CATGGCCTTGTATTTTCGAAAGAGCATAAG 2040583 36 100.0 30 .................................... TATCCTCTCGTTGATAATATGCTTAATTCT 2040517 36 100.0 30 .................................... TTGATAGACCAAAACACTTCTGTGAGCAGC 2040451 36 100.0 30 .................................... TGCCTTTCTTCAAAGAAGCTATGCTTGTTA 2040385 36 100.0 29 .................................... CTGCATCAAACGATGGCTTTGTCATCGGT 2040320 36 100.0 30 .................................... AATATAATCGACGAGTAAGAGCGAGAGACG 2040254 36 100.0 30 .................................... CGCGCACCGTTGACAAGTGTCAAGTTATCG 2040188 36 100.0 30 .................................... GATGATTTTGAGTTTAAGGTTTTTAAACAA 2040122 36 100.0 30 .................................... TCATACTAAAACTGGATAAACAATATTACA 2040056 36 100.0 30 .................................... TGACACGGCTGGCAGTGTTTCGGTTGGTGG 2039990 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 36 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTTACAAAAATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACCTGCCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //