Array 1 5860-3912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCAN010000263.1 Pseudomonas sp. AFW1 contig_263, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5859 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 5799 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 5739 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 5679 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 5619 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 5559 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 5499 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 5439 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 5379 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 5319 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 5259 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 5199 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 5139 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 5079 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 5019 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 4959 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 4899 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 4839 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 4779 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 4719 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 4659 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 4599 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 4539 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 4479 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 4419 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 4359 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 4299 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 4239 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 4179 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 4119 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 4059 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 3999 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 3939 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 33 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGACGTCGGGATCTACGAAA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5855-4567 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCAN010000076.1 Pseudomonas sp. AFW1 contig_76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5854 28 100.0 32 ............................ CCGAGTGGGCCGAGCGCGCCATCGATGGTACT 5794 28 100.0 32 ............................ TATCAGTGATGAGCAGTTGGCGGAGGTTGAGG 5734 28 100.0 32 ............................ TACATGATGCGACCCGAATTTCGCATTCGAAA 5674 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 5614 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 5554 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 5494 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 5434 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 5374 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 5314 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 5254 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 5194 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 5134 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 5074 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 5014 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 4954 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 4894 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 4834 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 4774 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 4714 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 4654 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 4594 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //