Array 1 141204-141350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPO010000023.1 Lactobacillus crispatus strain LB66 Contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================== ================== 141204 25 100.0 36 ......................... CACTTGACTTAAAGCTGGCGATTGCGATTGGGGATC 141265 25 100.0 36 ......................... GCAAGTGTGTGGCGCAATCCGTGAGGAGTTAGGATC 141326 25 96.0 0 .......................A. | ========== ====== ====== ====== ========================= ==================================== ================== 3 25 98.7 36 ACCTCCACATACGTGGAGAATACTG # Left flank : TGTGCGTCCATAATATCTAAACTATTTAAATCAATCATTAAAAAGTACCTCCAAAACTTTTTACTAAAAATTACAATTATTCATGCAGCGTTTTCTACCACAATCAATCTTTTCCGTGTTTTCTTTGCCCAAAATACTTTTTAATTTGTTCAAGGTCCTCTGTAGTAGCTTCTTTCAAAATAAAATTTTTAGTAACCGATTTAAATACTGTTTTCGAGTTTTGTTTTTGGTATCCCACTTTTTAGTCGTCTTTTTTTGTGCTTCACTAACTGTCATTTTACTTCACTAACTCTATAATAAAAAAATTACTACTGCAACAATAAATATTCCAAGAGCAGCTCTGTTGATTATTTTAGTTGTCTTTACATATTTTCTTTCATTTTTTCTGCCAACTATTAAAAATTTCTTTTTGCTTTTTAGAAGCCTGAGATTTTAAAATTTTTCCTTGTGGTCTCGTATAATTACATTCATGATTTCTTCAGGAATCCCAATATAGCAAT # Right flank : GTAAACAAATCCTGATATAACAACAATCACAAAACGATAGATCCCAAAATTTCATCACTTTGTCATTACTATTGTATCTATTTTAATCCCATTAGTCACACAACAACAGAATTTTCTTGTCTCCCTAAATATACAAAAAAGACGTCATCTTTCGACAACGCTTATACAACAGTAATTCAACTAAAGTTCTTTTTTGTCATAGCCTATTCGCTTTAAAAAGTTAGGGTCAGAACGCCAGTTATGTTGGACCTTAACCCAAAGACGCAAGTTGACCTTTTCACCAAGCAATCTTTCAATCTCTTGACGTGAATTAATCCCAATCTGCTTGAGCATCTTACCGCCCTTACCAATAATAATGCCTTTTTGACCGTCTTTCTCAACATAGATAGTCGCTTCAATCAAGAGCTTGCCATTTTGATGAGTATTCATATGATCAACTGCGACAGCAGTAGCATGTGGTACTTCTTGTGAAGTCAGTCGCAGAATTTGTTCACGAATTA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCCACATACGTGGAGAATACTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 146980-145889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPO010000023.1 Lactobacillus crispatus strain LB66 Contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 146979 36 100.0 30 .................................... TTTGGTGTTGGCCAGTTGGTAAAATTGCAG 146913 36 100.0 30 .................................... TCAGTCCGTAGCAAAGCGATTAGGGCATGG 146847 36 100.0 30 .................................... TTGTAGGATGGTTGATATTCAAATTCTTTA 146781 36 100.0 30 .................................... CAATGTTATCAATCCTTTGCCCTGTTGCGT 146715 36 100.0 30 .................................... ATCTATATGAGTTTAAGCGCTCCTAAATCT 146649 36 100.0 30 .................................... CATTAAATAAATTAATGTATCTCGCTATAG 146583 36 100.0 30 .................................... TGCTCTTTCTAAAACCGTAACCATTCGGGA 146517 36 100.0 30 .................................... TAGTATTAACAGCAATATGGAACTCAGTGG 146451 36 100.0 30 .................................... AACTAGCTGAGCCTGATATTTGACTATCGT 146385 36 100.0 30 .................................... AATGTTTCTGATCTGTCTGTCGTTGATGAT 146319 36 100.0 30 .................................... GCAAAATATGAGTTTTAGTTGCGTTTGCCT 146253 36 100.0 30 .................................... CGTAAAGGCAATTAGTGCTTTCACCGTCTA 146187 36 100.0 30 .................................... GTAGATAAAGTAGTGACTGTCATGATAAAG 146121 36 100.0 30 .................................... AGTAACGGCTATCAAATATGTTTTGAAGCC 146055 36 100.0 30 .................................... CTATGGTCGTTAAGTCAACTCAAAAGGACG 145989 36 100.0 30 .................................... GCAGAACTAGATCCAAGCCATCAACGTACT 145923 35 83.3 0 ......................-..G.AG.C...A. | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.0 30 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Left flank : AATGACAATATTATGGCAAAGTATATGAATGTCATTATTAAGAACTTTATTTCTAACTTGGATGAGGTAAACAGAAATAGAATTTTAAAATCTTTTTATTCATTAGAAACAGTATTGAATGATTCTTTGCTTTTGGAAGATTTACCTTTAGAAATTGATTTTAGCGAAGATATTAAAAAGTTGTTGAAAATGGTTAACATTCATTTAGATGCTCAATTAATGTTAACACCATATGCTATAATTGAAACAGTTCTTAAGATTCATCAAGAATATAATCTTGATAGTATTCCCGTGTTTTGTAATGTAGCTCATTACCTTGATGAAACACAGTTAAAAGAACTTAGTAAGATTGTTAGACAACTTAAATTGAAAATTATTTTAATTGAATTCACAGATAAGCAATATGGGGTAGCAGTCAAGGATGCCCAAGTTGCATATATTGATCGAGATCTTGTTGATTGGTATTAGACAATTGATTAAAAAGATATTATGAAATATCG # Right flank : AGCAATCTGCATAAATTTACAAATATTTTTCTGTAAATAAAAATCGCTCTAGAGAAACTCTAGAACGATTTTTTGACATACTTGATCTTAGTATCTATTATTACTTAGCGTAATCATCAATGCCCAAGTGCTCCAAAATAAGTGCGGCAGTTTCTTCAATGGAGCGGTGAGCAACATTAATTACATAGCAACCTAATTTCTTATAAAGTGCTTGTGCTGATTCAAGCTCCTTGTTGATTGAATCCATATTAGAATAAGTAGTATCAGGATTCAAACCATAAGCGATCATTCTTTGACGTCTGATTTCGTTCAATACAGATGGATCGTTAGTCAAGCCAATAATTTTCTTAGGATCAATTTCATAGATTTCTTTTGGAATGTGAGTTTCAGGAACAAGTGGTAAATTAGCTACCTTTAAGTTCTTATTGGCCAAGAACAAAGATAGTGGAGTCTTAGAAGTTCTTGATACCCCAAGTAAAACAACGTCAGCTTCCAAGAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 157323-156807 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPO010000023.1 Lactobacillus crispatus strain LB66 Contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 157322 29 96.6 32 .C........................... AATGCAAGCTAAGCTTTTTGGTAAGCGATTGA 157261 29 93.1 32 .C..........................C ATCAGCACTGTCAGTTAAGCCGTTGATGTTTA 157200 29 100.0 32 ............................. GTTGGTATCCACATGATGAGTAAGTACTTGAA 157139 29 96.6 32 ............................C TGTAAAAGATTAACCGGACATGGACAAGATGA 157078 29 100.0 31 ............................. GCACGAGTTGTATTGATGCGGCTAAGTTCAT 157018 29 96.6 32 ............................C TAGCAATTGAAGATTCTTCATTAGAACAAGTA 156957 29 100.0 32 ............................. GCACGAGTTGTATTAGATGCGGCTAAGTTCAT 156896 29 100.0 32 ............................. GAGCCTTCCTGACGGCTGACTACGTGACACTA 156835 29 79.3 0 .............GA........T.AGT. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.8 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCATCCACAGCATATTATTGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTCTGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGGGATGTTGATATATCGTGGATCATTTAGT # Right flank : ATATGGAGAAAGATATGTTTACAAAGCAAGAATTTAAGCCGCAGGGTTATAAGGAAAATGTCGAAAGGCTTAAACTTTTTTATCACAGTGAATTTTATCAAGACTTGAAAAAGTTATATCCTAATTATTTGAATAAAGTTGAAGATGCTTTATATCAAGATCCGGATTCTAGTGATGAATTTCTTTATATTGCATTAAGTGAAAAATATAAACTCGATGTTTCTAAGAAAAATAACTCTTTTTGTCTTATTGATAAGGTGGGAAACAGTGAAATTGCATTAGGTGCGGATGCTATTTGCGGAGTAAAATGTTTAGCTAAATACTATCCTGATCTCGATGACTGGATCGATGCTTATGAAACAATACGAAGTCAAACATCCCTGCATTTTGTATGGCCAAGACATAAATTACCAACGATCAATACTCTTAGATACATTAAATATTTGGACCGTATTGATTTTACTTTATTTGATTTAAAAAATTATTTTGAAGGTAATAAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : GCATTCTCCACGTATGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //