Array 1 48152-48320 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHNP010000013.1 Streptococcus pyogenes strain GAS1441, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 48152 36 100.0 31 .................................... GATTGACCACAACATCCAACGCTTAGGTTAT 48219 36 100.0 30 .................................... AATAGAGCTAGACAAAAAATTGAGTTTGAC 48285 36 88.9 0 .............................T.C.TT. | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 96.3 31 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CAACATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTTCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGTGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCAAGGGGAGGTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTAAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGAGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCTTAGTGATGATTGGGAAATTTTTAGTATGGTGCATGGGTCTCATTTAAGCGACTCTGCT # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 45751-46179 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHNP010000004.1 Streptococcus pyogenes strain GAS1441, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 45751 32 100.0 35 ................................ TCACATAGCAAAATGCGGTTATTGTGGTGCCCCTT 45818 32 100.0 34 ................................ GCGCATAGCTTGACTAGGCTTGTATTTATTACCG 45884 32 100.0 34 ................................ TATAATGATGGCACACTCTTCACCAATTGATACA 45950 32 100.0 34 ................................ ATCGATTTTGCAGATAAAAGGAAACATAGAGTTG 46016 32 100.0 35 ................................ ATTATTTTATTAAAGTTATCACGTAAATTTTGCAA 46083 32 100.0 33 ................................ CATTATATGAACAATGCCTTTGCGGAATTAGTT 46148 32 96.9 0 ...............................G | ========== ====== ====== ====== ================================ =================================== ================== 7 32 99.6 34 GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAGACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAAAACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA # Right flank : GATGAACCCGACCTCATTAAAAGAGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGGGTAACTTAAGAGAGGAGTTATTTATGATACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCATTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAAACTTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCCTTTATACGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //