Array 1 433460-431453 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXBM01000001.1 Pseudomonas aeruginosa strain MCF430 IPC1360_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 433459 28 100.0 32 ............................ AAAGTAAAAGTCGAAGCCAGACTTCATACAGC 433399 28 100.0 32 ............................ AGGTCGGCGGGGAGCGCCTCAGCCGTCACAGA 433339 28 100.0 32 ............................ GACAGCGCGAGCAGTCCGGCGCCCCTCGATCC 433279 28 100.0 32 ............................ TTGATCCGCAAGAACAACCGGTCAACCTCGCC 433219 28 100.0 32 ............................ ACGAAAGCAAAAAAGAATTCCCGGGCTGTGTA 433159 28 100.0 32 ............................ TTCGCAAGAGGGGCATCGAGGAAGTCAACACG 433099 28 100.0 32 ............................ TCGGAGAGGTTCGTCAGTTCGTAGAAGCCGGT 433039 28 100.0 32 ............................ TCCCAGTAGTCCCGCGTGGTGAACTTCACTCC 432979 28 100.0 32 ............................ TGCTGCCGTCCCCGATCCACAGCCTGCGCGGC 432919 28 100.0 32 ............................ GCCGAAACGCTCGTGCAATTCGTCAGCGATTC 432859 28 100.0 32 ............................ TCAATCGGGCATCCATTGGCGGCTGGTGGGGC 432799 28 100.0 32 ............................ TTTCCAACTGATCAGCGCCAGCAGGCGAGAGG 432739 28 100.0 32 ............................ GGCACACGAACGGATCGTTGTCGCTCGGAATG 432679 28 100.0 31 ............................ CACGCATGACCTGACTCAGCAGGTCCGGCGA 432620 28 100.0 32 ............................ AGGGAGGACCGGAGCGACAGGTACGACTGGCG 432560 28 100.0 32 ............................ TGGACGAGCTCCAGGACGCGCGAAAAGGTACC 432500 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 432440 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 432380 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 432320 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 432260 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 432200 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 432140 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 432080 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 432020 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 431960 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 431900 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 431840 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 431780 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 431720 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 431660 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 431600 28 100.0 32 ............................ TGCGCCCTAAATCAGTGATCCGGCGAATTTGG 431540 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 431480 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 34 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 437577-438384 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXBM01000005.1 Pseudomonas aeruginosa strain MCF430 IPC1360_5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 437577 28 100.0 32 ............................ GCGACCTCGCGGCGGCACTGAGCGATGCGGAT 437637 28 100.0 32 ............................ AGGTCGGACTGGTGAACTGCCGAGTACGCCGA 437697 28 100.0 32 ............................ TCGCATTGCGCCTGCGTCATGATGCCCGACTC 437757 28 100.0 32 ............................ AGTACCAGCGATCTGCGAAACCGGACAACTCG 437817 28 100.0 32 ............................ GAGGAGCACGGGACGATAACAAGCGCAAAGGG 437877 28 100.0 32 ............................ TGGTGCAGATGGCCGCCGCGCGGGTACACGTT 437937 28 100.0 32 ............................ AGGCTGCCAAGTCGGTGCGCGAGGCCGGCTTT 437997 28 100.0 32 ............................ TCATAGGGCTGCGGCAGGTTGACCACGTCGCT 438057 28 100.0 32 ............................ ACACCCTAGGCTTCGCATAATGTGCAGACGTT 438117 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 438177 28 100.0 32 ............................ TTGCCCGTAGAAGTACGTTTCCTGTGCCATGT 438237 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 438297 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 438357 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 447897-446908 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXBM01000005.1 Pseudomonas aeruginosa strain MCF430 IPC1360_5.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 447896 28 100.0 32 ............................ GAACAAATGCGGCAGTGGCTCCTCGATCTCCG 447836 28 100.0 32 ............................ TGAGAAGTTTGGCAGCCCTGGTGCGGCTTGTG 447776 28 100.0 32 ............................ ATCAGATAGTCGTTGAGTACGCTCCACTTCAT 447716 28 100.0 32 ............................ AGGAAGTGGACGGTTGAGGAGATCAAGGCGAT 447656 28 100.0 32 ............................ TTGATGATCCAGCCGCCGCCGCCAATCGAAAA 447596 28 100.0 32 ............................ CTGAAAATGGCGCAGGAAACCGAGGTGGCCAT 447536 28 100.0 32 ............................ TGGCCCAGGTAGGTGGCCCAGTCCTGACCCTC 447476 28 100.0 32 ............................ TTGTCGGCCACGCGCAGGTTCTCCACGACGTT 447416 28 100.0 32 ............................ TGGAAGTCCCGCACCGAGATCGAGGCGTTCAT 447356 28 100.0 32 ............................ TGACTCTGCACGGTGTCGCAGATTGACACCTC 447296 28 100.0 32 ............................ AGTGCGGTCAGACCATTCACGCCACACTTGCT 447236 28 96.4 32 .........................C.. TCCCTGCACCGGAGTGGTATCGAGCAGCCAAT 447176 28 100.0 32 ............................ ACCCTTGCGCGCAGTGCTGCGACTTCCTCCGT 447116 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 447056 28 100.0 33 ............................ TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 446995 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 446935 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //