Array 1 20923-24756 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDJK01000041.1 Carboxydothermus pertinax strain Ug1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 20923 30 100.0 37 .............................. TTTGGGGAAATCCAATTAGATAACATAACATATTTAA 20990 30 100.0 36 .............................. GCTGGAATAACGGTTCCATCGCTTCCTATAAACTTT 21056 30 100.0 37 .............................. AAGCAGGGATAGGAGGTGATGAAAGTGAAAGTGGAAA 21123 30 100.0 36 .............................. ATTCTAAAGCAACAGGTGCTAAAGCATCATAAATGA 21189 30 100.0 36 .............................. GTTTTTATAAGCGCAGGGCCAAATATTGCAAGCAAA 21255 30 100.0 38 .............................. ATTTCTCCCCCATCTCACTCACCTTCCCCCCTTTCACC 21323 30 100.0 37 .............................. TTGGTATTTCTGTTGTAGACGTTGTTTCAGTAGCCTC 21390 30 100.0 35 .............................. GATTATTAAGAACTGGGATAAGCTAAAAGCAAAAG 21455 30 100.0 37 .............................. GCATTGAATTCGTCTCCGCTGGTATAAAGCCGGCCGC 21522 30 100.0 37 .............................. CGCTAAGGTCAAGGAATGCGAGCAGGTCAAAGCACGG 21589 30 100.0 37 .............................. AACTGGGAGAACTTTATCCTGCTGCCTTCCGGCAAAG 21656 30 100.0 37 .............................. ACTTGTTTAGATATAATATTGGCTAAATCGCTGTGTC 21723 30 100.0 36 .............................. TTGCTAGTAATTTTAATTTTATTTGCATCATAACTA 21789 30 100.0 37 .............................. TGATTAGAACTTTGACTAAAAATTTCTCTTAAATTGC 21856 30 100.0 36 .............................. AGTTACCGCACCGCTTGAACGACCATTAACTCCTTT 21922 30 100.0 37 .............................. TAAAAAACAGGATGCAGAATTTCATTATTTTCTGTTC 21989 30 100.0 36 .............................. GGATGAACTTCTACAATACCCTCATCAGTTATTAAA 22055 30 100.0 36 .............................. GCTCTTCATACCAGTTACATACATCTTTACTCAAAT 22121 30 100.0 36 .............................. AATAATTTGCATCTATATAATCCAAATTAAACGTTA 22187 30 100.0 36 .............................. GGAGCATGCAGAGGGGAACGTAAGGGGTTCCCTTGC 22253 30 100.0 37 .............................. TAGCCATATAAGCAGAACGAGAAACACCAGCTTTTTT 22320 30 100.0 38 .............................. GGAGGGAAAAACGCCCTCCAGGGGCCCACCCGTTAAGG 22388 30 100.0 36 .............................. CCTTTAATTTTCTAACCTTATTATAAAACAATGTAA 22454 30 100.0 37 .............................. CAAGTCAATATTAATTTTCGTATTCGCTTCGAATACA 22521 30 100.0 36 .............................. CACTTTTTAGCAACGTCCATCAAATCACTGGATAAT 22587 30 100.0 37 .............................. ATCATTCTTCCACACATTAAAAACATTAAAGTATTCA 22654 30 100.0 37 .............................. TGACTTCCCTCGCCCGGCCTTTTACCACTTACCCGCA 22721 30 100.0 36 .............................. CTTGGTTCTGTTGGAAAATGGAATATTTTTAGTAAT 22787 30 100.0 36 .............................. AATTTTAGCCTTTCTAACCGGCCTTTCTGTCTTTAG 22853 30 100.0 37 .............................. CTGCTAAACGCTCATAATAACGACGCCTATTATTTAA 22920 30 100.0 37 .............................. CTACCGAAGCAGGTTCCCGGTCAGGGAGTCCCAGTTT 22987 30 100.0 39 .............................. GTGGTTAAAAACACCATACACGACCCCACGGAGTGCCCA 23056 30 100.0 39 .............................. GGGCACGTCCCCACATCTTCAAGAAGGCGTCCTTGAGAA 23125 30 100.0 36 .............................. TATATAGATGTTTCAGATGTTTTTGCAGATGAGGTA 23191 30 100.0 37 .............................. AAGGCTATCCCGGCCGGCCTTAGTTGAATAAAAGCAA 23258 30 100.0 36 .............................. TTTATTATTAGGAGGTGTTTTTATGGTTTTACTTTA 23324 30 100.0 36 .............................. AAAATTATAATTTAAAAATTTTTTATATGGAGGTGA 23390 30 100.0 36 .............................. AAAATTATAATTTAAAAATTTTTTATATGGAGGTGA 23456 30 100.0 38 .............................. CCAAATACGCTTCGAATTTGAACTTGTTCATATAAACC 23524 30 100.0 37 .............................. TACTTATAAAAGTAAAAACTAATAACAAAATTAAAAA 23591 30 100.0 36 .............................. TTAGCCCTTAAATTTTCGGGAGTTTCTTCCATAAAA 23657 30 100.0 36 .............................. GGGATAAATATAAGAAGTTCCAGAAAAAATTAGAAG 23723 30 100.0 37 .............................. TAGTTGAATATTAAAAGGTGGTTCAAATATGATAATA 23790 30 100.0 36 .............................. GAAAGAAATAAGAAAAAATAAGATGGGGAGGAAGTA 23856 30 100.0 37 .............................. TTCTCAAAAAGGTTTTTGCCACAACGCTCACAATTAA 23923 30 100.0 38 .............................. AGGGGAGGCGAAATTATGGCGGGGTGAAATGCCCACGG 23991 30 100.0 35 .............................. TCGTTTTTTCCGTCGGTGCCGGCCACTGGTCGCCA 24056 30 100.0 36 .............................. TGGTAATGGAGGTGGAGGACGTTGGCTAGTGGAGTA 24122 30 100.0 37 .............................. TTGTTCGCGTTTGTTTTGGCTTCCCAAAACCGTATCA 24189 30 100.0 37 .............................. TTGTTCGCGTTTGTTTTGGCTTCCCAAAACCGTATCA 24256 30 100.0 35 .............................. AAAGCAAAAGTGACAGCTTCAAACTGCTTCTGCGG 24321 30 96.7 36 .............T................ ACGCATTCCGGTAAAGATAGCGGTACATATTAAAGC 24387 30 100.0 36 .............................. TGTATCTTGCAACAGTTTGCAGGGAAGTTGAACCAT 24453 30 96.7 36 ......................G....... TAAGTTAAGTGAATTAAGAAAGGCAGAAAGAGCTGT 24519 30 96.7 37 ......................G....... GGCCGATAGCCACAGCCTCCTGGATTAGGTCCCGCAT 24586 30 100.0 38 .............................. ATCCTCACCGTAGCACAAGCCGCAAAGTTACTTCAACT 24654 30 90.0 43 ........C........C....G....... CGGGTTAAAATTACCCTATAACCAGCCTTTTCAAGCTCTGCTT 24727 30 90.0 0 .C...................AG....... | ========== ====== ====== ====== ============================== =========================================== ================== 58 30 99.5 37 GTTTTAATAGAACCATTGTGGGATGGAAAC # Left flank : ATAAAATTAGAAGCCTATCGATTGATAAAGTATTTAATTGGGGATGAAAACTACCGGGGATTTAGGGCGTGGTGGTAAGATGTATGTTATTATCGTTTACGATATTGGGGAAAAAAGAGTAGCCAAGGCGTGTAAGTTTTTAAGAAAGTACCTAAACTGGGTGCAAAATTCTGTGTTTGAAGGAAATTTAACCGAAAGTCAGTTTGAAAAAGTAAAATATGGGCTAAAAAAATTAATTTGTGAAGAGGAAGATGCAGTGCTGTACTACGTTTTTTCAACCCCTAAGTGGGTGGAAAGGGGAATTTTGGGTAAGGAGAAAAATCCGATAAGTGATTTTTTGTAAAAAAAGCAGGAAAAATTCGGAATAAAGCGAATAATAAATGGCAAAGGAATAAAAAAATGTCGTCGCTGCCCAGGGATTTTTGCACTATCGGGGGTCGACGACGATTTTAAGGTTTTCACCTACCCGAAAGCCTTATTTTTTAAGGCTTTCAGGATGG # Right flank : CGCTGGATTTGCAGTACAAATTCCACCGGGAATTAAACTGCCTGAAGCTTCAGCGGAGCAGGTTTAAAAAAGCCATTTAGAAGTGGAATTTTAAAAATTTAGAAGCTTAAAGCAGGAAAAGGTTTTAATTTTCCTGCTTTTAATTTTTAAAAGCTTGCGAAATTAACTCTAAAATTTTGTAAATTAATCGAGAAATATGGCAAAAAGAGAAAAATTAAAGAGGATTTTCCTTAAAAATGGCGAATATTTGATTTAATATTGATAAACGTTACTATTTATTTTAATAAAAAATATACTAGCAAAGGCGAGGTATACTAAAGAATGGATTGGCCTTTGATTACAAAAAATGATGGTTTGGATCATGCTTTTTCTATCTTTATTTACCTTATGCTGCAAGCTTCCGGTGGATAAAGAACAATTTTCGGGCAACATATTTTTTCCCGATGATTTGGGAAAGTGACGGTCAAAGCGATAAAAGGAAAAAGGTATTTCTTCCGATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATAGAACCATTGTGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 13662-14025 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDJK01000027.1 Carboxydothermus pertinax strain Ug1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 13662 30 100.0 36 .............................. ATTGGATGGGAGTACATTGCCGAAAAATTTGGCTTG 13728 30 100.0 38 .............................. AAACTGTAACGGGCAACACGTTAATTACGTGGCAAAAA 13796 30 100.0 37 .............................. GTATACGGGCCTCGCGTAGTCTCAAGAACCCGCTGGC 13863 30 100.0 35 .............................. ATTTTCTTGTAAGCCTTGCCGTACTTGCTTTCCTA 13928 30 100.0 38 .............................. CTCTTACTGATGATAGGCCGGAATTTTTAAAAATGATT 13996 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 37 GTTTTAATAGAACCATTGTGGGATGGAAAC # Left flank : AAAAACCATTATTACCTTGAAAATTTGTATCTGGATGACCTGGAAAGAACCGCTTCGGAAATTAACGGCTGAATTTCCGGTTTTAAAGTGCCAGTAGGGTCAAAAAATTTAGCCGTTATTTATTGGTTGGATGTTTTCCGGAACTTGCTTTAAGCCAGGATGAAAAATCAAGTTTTGCGATAAAAGAAATCTTGGTTACACTGAAAACCGTTTTTTGGAAGAACTGGCGGGATTGAAAATTAAGAAAATGTATAAAAATATGCAGGCGATTTTTGAAGGAATGGAAAAACCTTTAATCTTCCGGGTAAAGAAAAAGCATTAATGCAAGAAAAACATTATATTTAAAAAGACAGCAGAAAATTATCGGAAAAAAGCGAATAATATAAGCAAAGTAATAAAAAAGTCGTCGCTGCCTGGGTTTTTTTGCACTATCGGAGGTCGACGACGATTTCAAGGTTTTTACCTCTTTGAAAGCCTTATTTTTTAAGGCTTTCAGGATG # Right flank : CTATCACTTGCAAAAAACTCGGTAAAGCGTTCATTTCCAGTTTTCCACCGGCGAAAAAGTATATTTTCTGCACAAACGGATTCAGGACGGTTACTGGGATCTGGAAGAAATGGCGTATTATAAAGCGTTGATAGAAGTGCCTGACCCTAATGACCCTGAAAACGGTAAAATTGCAACCAACTACATTGACCGCAATAGTCCCAAACTGGGGGTTATCCCTACCATTGACCTGCCACCGGAACTGCAGGGGAAAGGAATAAAATATGCGGTAGTGGACCCGACCAAAACCACTGATAACCCTGATGATGTCAAGAAGCTAAAGTTTTTGCAGGAAAACGGCAAATACATTATCGTGGACTGCTACCTTTTTAACCCGGAAAAAAGAGATGGCAGCTACAAAGTAATCGGCAAAGCGGTGATAATGGGTGAGTGGAAAGACAAATACGACCATTATGCTTATGTAAAATTTAAAGGTGTAGACGAAAAAAATATTTTGGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATAGAACCATTGTGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 17570-18728 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDJK01000027.1 Carboxydothermus pertinax strain Ug1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 17570 30 100.0 36 .............................. AAGTTTTAATAGAACAAGGCGTGCGAGAAGTTGAAG 17636 30 100.0 36 .............................. AATCAATGTTTTCCGCAATCCAATCTACTCCTTCAA 17702 30 100.0 36 .............................. AAGCATTTCCTTCTGCTCCGCACCTGTGGCAGTAGA 17768 30 100.0 36 .............................. TTGCGAAGTGTGCGGAAACGGCATCACTGAAAAAGT 17834 30 100.0 38 .............................. TCGCCAGAGTGTGGAGTACAATGCGGTATTCACCGCAC 17902 30 100.0 36 .............................. ATGCTTTCTACCTGGCGGCCAGGGCGATATACCAGG 17968 30 100.0 37 .............................. CAAAGAGTGCTGACCAGGCACCGGATATAAAAGCACT 18035 30 100.0 36 .............................. ATAAGCAGTTTCAATTATTGAGCCAGGTTGATAATG 18101 30 100.0 37 .............................. AAGTTATTGGAAGAGATGAATATGGTGTTAATATTTA 18168 30 100.0 35 .............................. TCATCAAAATATAAAATGTCATTATGTCTATAGAT 18233 30 100.0 37 .............................. CCTTAATCGGTAATAAATTATGTTGTTGCACTAACTC 18300 30 100.0 37 .............................. CTCATTAGCAGGAGACCGTTTTTTCCGTTTCCCCCCG 18367 30 100.0 36 .............................. CCTTCCAGGATAAGTTTTATTTCGTGGATGGTGCTG 18433 30 100.0 35 .............................. TAACTAAAACAACAACCCAAAAATTAGAAGAACTA 18498 30 100.0 36 .............................. GGTGTCGGCTCCGGAATTTCTACCATAACCGGGATA 18564 30 100.0 36 .............................. ATAGTTGGTTGGTAAATGGAATTAGAGGATCATCAA 18630 30 100.0 38 .............................. GGTATTATCGGATAAATGTACATCTAATACGCTCTGGC 18698 30 80.0 0 .....................C.C..CTCG | C [18721] ========== ====== ====== ====== ============================== ====================================== ================== 18 30 98.9 36 GTTTTAATCGAACCAATCTGGGATTGAAAC # Left flank : CGGTTAAAGAGTTGGCTTTAATAATGCAAAAACTTGGAGCTTATTATGCTATGAATCTTGATGGGGGAGCTTCCAGCGGCCTTTATGTAAACGGCAAGTACCTGACCAAGCCCGGGAGGCTTTTGTCTAATGCCCTGGTGATTTCGTTAAATTAAGATTGTCAAATAAAATTGTATTTTTTATAAACTATGTGAAAATAAGAACGTGACCTCTTGAGGTCGACGAAAAAATTGCATAAACCGTGAATAAAACGCTGAAATGACTTAAATATGTCAGGTAAATATGAGTAAATATACTATTAAAATTAAAATTATACAGATTTTTTCGTCGACCTGCGGTTACCCCCAAAATCCCGGGAGGTCGACGAAAGGTTGAAAATAGCCCTTAATCTTTGAAAAATGAGTTTTTATCAAAAATTTGCCATTATGAACCAAAATTCACATAAAAAATGTAAACTTCTTCTTTCTTTAAAAATCTTTTTCTTTTATAATTAATTATGG # Right flank : GCTATCGTCCCGAGCGGGAGTGACAAATTACTCCTTATCTTAAAAATGCTTTGAATTTATCTAAGGTTTTAGAAAACTTAGAGTCTCAGGAAAAAGAGCTTTTAAAATACCTTGTAGAAAAAGGCGGATGGGCAAGAATTACAGTAGTTTCTAAAAAGATTGGCTCAAATAAAGACGATGGCTATAACTGGGAAAAGGATGAGCCGAAATCTACCATCGGCAAACTCTGGGCAAAAGCCCTGGTGTTTATCTGAAGAGCAAATCTATCTGGACGCCGGGAAAAAATAGTAGTGATACCTGTAGATTTACGGGATCATTTAATAAAATTTTTAAAGTAAACCATGCTCCGGAACGTGCTTCCGGGTTATTCCTGCACTAATTCAAATGTAGGTACAATCTGCACGCCCTTAAAAAGAAAACTGCTTATTTTTCAAAGGTTAGAGAAATTTAACTGACAAAGATCCAAAAGCCCTGAATTTACTCGGGGCTCTTTATTTAGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGAACCAATCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 3 30175-35460 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDJK01000027.1 Carboxydothermus pertinax strain Ug1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 30175 30 100.0 36 .............................. GCGGGCACGTAAGAATGGCAAGTCAACCGAGCTGTC 30241 30 100.0 37 .............................. AGTGCATCTGGATCGGCAAGCTTACTTACAATAGTGC 30308 30 100.0 36 .............................. CTACTACCACAGGACGGCCTTTAATTACATATTGGG 30374 30 100.0 38 .............................. AAGCGGTACTACTTGCGCTTTAACCTGGCGGCTGAACT 30442 30 100.0 37 .............................. ATGATGCAAAAGAACCCGAGAAAGACAAAGCTTTAGG 30509 30 100.0 36 .............................. ACGATTAACGATATTAAAAAAGCAGTAGCAGACAAG 30575 30 100.0 37 .............................. TATCCGAAATTTTTCCCAGTCCCCGGCATGTACGACA 30642 30 100.0 38 .............................. TGACGAAGACTTCGATAAAGCCTTCTGGGAGTCAGAAA 30710 30 100.0 36 .............................. ATTCCCAAGCATAGTGAAACCGCATATTGTAGTCGT 30776 30 100.0 36 .............................. CCGTTAAGGTTAAGACCGCAACTAAAGCAAAGAATC 30842 30 100.0 36 .............................. ATATAGTAGGTCCCCGAAAACCTACCAAAGCCCTCC 30908 30 100.0 37 .............................. CGCGAGATATAAAGCCGCCTCAGCCCCGCCCTCCAGG 30975 30 100.0 37 .............................. ACGTTCTCCGGCAACCCTTGCAGATGCTTGCGTAAAA 31042 30 100.0 36 .............................. AGTGTGACAAAAGCATCGTATTCAAATATAAAGTAA 31108 30 100.0 36 .............................. TAAAGTAGCTAAGGCTGAAAATTCGATTGTTCTTTT 31174 30 100.0 38 .............................. GCTCCAAAAGGAGCTTATTTGCTAATTCATACTCCCCC 31242 30 100.0 36 .............................. CTTTATAAAAGTCCGTATAATGCGTTAATTCTTTCG 31308 30 100.0 36 .............................. AACTCTCAAGTAATCTTTTTCTCAGCTTTCTTGATA 31374 30 100.0 36 .............................. CTGATTAAACCAGGTTCTCATTCCAACCACCTCCTA 31440 30 100.0 37 .............................. CCGGATCTCTTGGCAAGGGGTTATCTTTTGTTACTGG 31507 30 100.0 37 .............................. AACACATCATTTGCATCATCATTTGCAAATACATACA 31574 30 100.0 37 .............................. TTTTATAAAGTTTTTAATGTCGCTTTCATAACTCCTG 31641 30 100.0 36 .............................. TTTTCCTGCGGACGGGAGAGGTCTTTGAGCAGGAGT 31707 30 100.0 36 .............................. AATGGTGGTAAAATCTAACAAATAAGCTTGTACCAA 31773 30 100.0 35 .............................. CCGGAAAGGTGTCCAGGTAATTCATGAACTCTTGA 31838 30 100.0 36 .............................. ATATGAGTTGACAGTTCTCCAGTTTCGTAGTGGGTA 31904 30 100.0 41 .............................. TGACGACAAGGTTCGCAATATTTTGGGGGATTAAGCCCCCT 31975 30 100.0 36 .............................. TTTCTCATTTTAAAATCCCACAATGGTTATTTCAAA 32041 30 100.0 36 .............................. CCATGAAAATATCTAACATTGAAGTTTCGTCTATAA 32107 30 100.0 36 .............................. TTTACTATTTCATGCCCCCAGAAAAGGACAATAATA 32173 30 100.0 34 .............................. CCAAATATGTTTATAGCCATGGGAAATTTTTGGA T [32202] 32238 30 100.0 37 .............................. CTCGGTGTCAAGAAACTGAGCCTCATCAACCAGCACG 32305 30 100.0 37 .............................. CATACAGCCTATCATAGTTCCACTCACAATCACGAAA 32372 30 100.0 35 .............................. CAGGATTATTTTCGTCCATATGCTCTCTAAAAAAG 32437 30 100.0 36 .............................. TGCAGTGTAGCTCTCGTAATCTTTACTCCGTCAATC 32503 30 100.0 36 .............................. CGTTAAGGAAATTTGCGACCTTATCAATGTATTTTA 32569 30 100.0 36 .............................. ATGAATGGATTGAGATTTGCCCTGTGCAGAGTATCT 32635 30 100.0 36 .............................. ACAATCGCAGAAACTCTGCTAGCAGAAATGCCTTTT 32701 30 100.0 36 .............................. CCGTCCATAATAACGGTACAAAGTTTCCTGTAAAAA 32767 30 100.0 36 .............................. TGAAACATTTTTTCAAGTATCAACATCCCATTCATC 32833 30 100.0 37 .............................. GAAGGCCACGGAACGCCTCTAAGCCCGAGGCAAGTGG 32900 30 100.0 38 .............................. ATATAATCAATCAATATAAAACGAATATAATCATTTAA 32968 30 100.0 36 .............................. TTCACTTGGTTTCGTATACCTTGCCGTTGTATCAAG 33034 30 100.0 35 .............................. GCATGTTATTAGCATTCATGATCCAGTCGAAATTA 33099 30 100.0 38 .............................. ACACACAAACTTTGTATGGTGTTAGTACAACAGTTACA 33167 30 100.0 36 .............................. CGAAAACTTTAAAAGTCCTCGCAAGTTAGCCGAGGA 33233 30 100.0 35 .............................. TTGGATTCCGCCCATAGCTGAGGTTATGGATCCGG 33298 30 100.0 37 .............................. TTAATAATAATACCACTTCTACACCAGCAACTGTAGT 33365 30 100.0 35 .............................. CGCCTTTTAGCATTACCCGTAACATTTCCAGCATA 33430 30 100.0 37 .............................. TGGTAGTTTCCAATCTTTTAGGACATTCAAGGCTTGA 33497 30 100.0 36 .............................. AATTTACTTCAGACGACCATGCTAACTATCGATTTG 33563 30 100.0 36 .............................. TTATGTCAACACCTTTTTCAAAATTTTTTTCAAAAA 33629 30 100.0 36 .............................. CTCAGAGTACTACTTTAAGCTTTAAGACTTTACCAG 33695 30 100.0 37 .............................. GCTAACTTTGTTAATCCCAAGTAAAGCATTCTGTCGA 33762 30 100.0 36 .............................. TGGCAGTCAACCAAAATGTTCGTGAGTAGCCTCATA 33828 30 100.0 35 .............................. AAGTTATTTATAAGCGGGTGGTATAGGATGAAGAA 33893 30 100.0 37 .............................. TAAATCGTGAATTTTAATTGAGCGGCCGTGCAACCTC 33960 30 100.0 37 .............................. GTTAACTTGTTTTGCTTCTGTAGCTGATTTAATATTT 34027 30 100.0 35 .............................. CCCACCTGAGAAACACCGCCATGGAGATTATGCTT T [34056] 34093 30 100.0 39 .............................. TCGTATAAGCTTCGTACTCAGCCTGCATTTCAGCTTCCA 34162 30 100.0 36 .............................. GAAGAAAACACAATCGGGCCTTCTATATCAGCATGA 34228 30 100.0 35 .............................. TGATATAGTAAAATAAATAGATACAGATTAGCGCA 34293 30 100.0 37 .............................. CAAGCATTAGAGCCGATGTAGAGGCACAACTTATAAG 34360 30 100.0 37 .............................. ACATGCTCCGGCAGGTTGTTAATTGTTTTGTAATAAA 34427 30 100.0 37 .............................. ATCATAAAAAAGGGAAATTTAAAGTTTGTTGTTCAAG 34494 30 100.0 37 .............................. GCTACTTTCTCGTAATGTTCTTTTTCATCTCGTTCGG 34561 30 93.3 36 ...............A.T............ TCCAAGGACGCAAAAGAAGTGCCAGCCAAATTCCGA 34627 30 93.3 38 ...............A.T............ TTTTACAGATGAGGATATTATAGAAGCTGCAAAAATAT 34695 30 93.3 36 ...............A.T............ ATAATATCCAGCGTCTTTTCCCCGAATGTATTTACA 34761 30 93.3 34 ...............A.T............ AATGAAAGAGCGGGGAATTATCCCCGCTCATCTA 34825 30 93.3 38 ...............A.T............ CAGCCCATTTTTTTGCTTTATATTCTATTTCCCTGATG 34893 30 100.0 41 .............................. TATACTTCTAAATAGTACTCCTCGGTGTATTCACTCCCCTG 34964 30 100.0 36 .............................. AATAAAAATCAACCACAAAACCGCTTTTAAGATAAA 35030 30 100.0 38 .............................. TCGTATTCAAGAAAAAACGCCAGGTCTTCCCTGGCGCG 35098 30 100.0 36 .............................. CTTCATCCCATATCTTTTCAGTTTCCCAACCCAATG 35164 30 100.0 36 .............................. CCCAAGTGATAGAAGTTTGGCGGCTTCCTTCACTGT 35230 30 100.0 37 .............................. TCACTAGTGTTTATTACCAGGGAAACAATACAGAATG 35297 30 100.0 37 .............................. CCGGTACTGTCTCTGTTGGCTACCCCGGAATCTCAAG 35364 30 100.0 37 .............................. CCGATTGTGCAATCTCATTATTATTCCTCCCGAGAGG 35431 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 80 30 99.6 37 GTTTTAATCGAACCATTCTGGGATTGAAAC # Left flank : ACTCGGTATTGGAAGGAGAAATTACCGAAGCAAATTTTCGCCGGTTAAAAGGAGAGCTTTCGAGGATAATTAATCAAGATGAGGATTCAGTGCTGTTTTATATTTTTGGTTCCATGAAATATTCTTCCCGGGAGCTTTTGGGTATAAAGAAGGGAGGTGAAACCAATATGCTTTAATTATGCCTGGTATGTGAAATGTTGAACTTAGCCTAGTGAGGTCGACGAAAAAAGTGCATATACTATGAATAAATGCCTTAATAAGGCCAAAATTTCACCGGCAAAAACGAAAAAATATGCAAATAAACTAAAAAATATACAAATTTTTTCGTCGACCTGCGGTTACCCCCAAAATCCCGGGAGGTCGACGAAAGGGTGAAAATTACCTTTAAGCTTTGAAAAATAAGTGTTTATCGAAATTTTGCCATTATGAACCAAAATTCACATGAAAAATGTAAACTTCTTCTTTCTTTAAAAATCTTTTTCTTTTATAATTAATTATGG # Right flank : TAGACCTGCTCTACTGTGAACTTGCAAATTATTTGGGCACCAATATTTCAAAATAAAATAGCATAGAAGTAGGCTGTAATCTGCAAAAATTGCAAATTATTTTGGGAGGTCAGTATAACCTTTTGCAAAATATCACGGAATTTTAGCAAAGAAAAATAAAAAGAAAACCGGCCGCCGATAAAGCGACCGGTCAAGATTAGAAACCAGCATCCAAAGCCGCTAACCTAACCACCTCGGCATCAATGATTTCCTTTTTAGCCTGGAAACCATAAAGCAAGCAATG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGAACCATTCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //