Array 1 1909183-1907560 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073317.1 Lacticaseibacillus rhamnosus strain CE1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1909182 36 97.2 30 C................................... AAGAAACGATCCCGAGTTTCTGGATTGCTT 1909116 36 100.0 30 .................................... TCATCAGTATTCATGGAAATATAGGATGCT 1909050 36 100.0 30 .................................... ATCATCGAATCTTTGGGGACCTTACCACTT 1908984 36 100.0 30 .................................... GATTGTTTCGGTTGCTTCTGTGATGCCACC 1908918 36 100.0 30 .................................... ATGACTGGTTGCCGGTAAGCGATGAGTTCA 1908852 36 100.0 30 .................................... CATACTTGTATGAGCACTTTGACTTGTCAA 1908786 36 97.2 30 ....................T............... ACCGTTTGTGTTGCATGAATATGATCACTA 1908720 36 100.0 30 .................................... AGGTGCTATGCCGCTTGGCATGACGATTGA 1908654 36 100.0 30 .................................... AATAATATTGTGCCAAAAGGTAGTATTCTA 1908588 36 100.0 30 .................................... TCCAAGGGCATTCCAGATTGCAGAAGCCCC 1908522 36 100.0 30 .................................... GGGTGATGCTGACAAGATCAAGACGGCTGT 1908456 36 100.0 30 .................................... CGCCTTACGGGCGACAGCTAGGCCTATGGG 1908390 36 100.0 30 .................................... AGATCGAGCATTACGGCTTGCAAGACTGCG 1908324 36 100.0 30 .................................... ACAGTTGAGAAAAGAAAATACGCATTTAAA 1908258 36 100.0 30 .................................... AAAAACACAAATGGCCGCTGCCACCTTATG 1908192 36 100.0 30 .................................... AAAAAAGCCGCGGAACTTCTCGGGCTAGAC 1908126 36 100.0 30 .................................... CACAGTGCCATTCCACAAACCCGACAGAAA 1908060 36 100.0 30 .................................... CGAGCTTGCGGCCAATATCAAGCTATATGC 1907994 36 100.0 30 .................................... GTGTGATCATCATTACCTCTCTGCCACTAA 1907928 36 100.0 30 .................................... ATCGCATACTTCATGATGATTGATGCCAGT 1907862 36 100.0 30 .................................... CTGTGTTCTCACGTGTCAACAATTATTTCA 1907796 36 100.0 30 .................................... TTGTGGTGCCAAAACGGGTTGTTGTCGAGA 1907730 36 97.2 30 ...................................G TTTCAGCAAATATGACGTCTAACATGCCTC 1907664 36 94.4 30 ..................................AT ACTTGGAAAAGTTGCTATGCAGTTTGAATA 1907598 36 83.3 0 .......................AA.A....G..AA | T,CA [1907563,1907569] ========== ====== ====== ====== ==================================== ============================== ================== 25 36 98.8 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : CCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTATCAACAGGCGTTCAAATCCATTTACGACAAATATCAAGATCGGGAAACCAACCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAAGTTCAAACGGCATAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGTCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCTAAATTGGTACATTTGTATCGTAAAGTCGGCTTTCAGCAGCTGCCAGATCGGGAAACAACGATTAATGAGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //