Array 1 202860-202220 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTHM01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain V109 isolate V109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 202859 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 202798 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 202737 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 202676 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 202615 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 202554 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 202493 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 202432 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 202371 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 202310 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 202249 29 96.6 0 A............................ | A [202222] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 220545-218992 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTHM01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain V109 isolate V109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 220544 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 220483 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 220422 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 220361 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 220300 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 220239 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 220178 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 220117 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 220056 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 219995 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 219934 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 219873 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 219812 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 219751 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 219690 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 219629 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 219568 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 219507 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 219446 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 219385 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 219324 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 219263 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 219202 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 219141 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 219080 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 219019 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //