Array 1 1069-1692 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZGF01000046.1 Staphylococcus simulans strain SNUC 1535 contig046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1069 36 100.0 28 .................................... GGCGTTTCTTTGAGCGTGGGTCTGTTGT 1133 36 100.0 30 .................................... TTCCTTTAGACTTCTATGAAATGGATATGT 1199 36 100.0 29 .................................... CAAATAAACTCTGAACGTACTCTGTTTGA 1264 36 100.0 29 .................................... ATCACAGGTGGCGTGTTACAAAGCGCGAG 1329 36 100.0 29 .................................... GGTGGTGTATATGTCTGCTGTTGCTGTTG 1394 36 100.0 30 .................................... GAAAGTTTTTAAAGCATTTTCATACTTAGA 1460 36 100.0 29 .................................... AGAAGATTTGATGAATGAGCCTGTCAGTT 1525 36 100.0 30 .................................... ATACGGAACGGGCGTTTTCGCAACAGGCGC 1591 36 97.2 30 ..........A......................... AAAGTACATTGATGACTTAATCAAAATATT 1657 36 83.3 0 ...........A.................T.G.CCA | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.0 29 GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Left flank : AATATTGTTTTGAAAAAGTTGCTTGGCATGTTTAAACCAGACTTTCATAATGATTTAGATGATTTAAATGCGATAGAGCAACGCAAATTATTTATAGACACATTAACATCAACAGAAAAAGAAAATGTGCTGGTTTTGTTATTCCCTGAAGCTCATTTAGGGCTTTCGGATATGAAGGCATTTAAAAAATATCTGCAAACTCTAAATATGTTTAGTATTATTGTTACGAGCCATCCTTATTTTATTATCGAGTCAGATACATTAGCGCTTATTAAAATGAATGGAGAACCGGTGAATACTCAACAAATAAGAGAAGAGTTATTGTTGTTTAAAGAAAAAGAATCAATAACTGATTTGGATAAGACAAGCAAAATGATAGCTTATCATGAATTTTGTCAACATCCATATCTAGATGATGAGTTCTTCATTCAATTTATGAACAAATATTAGTTTACTGTCATTATAAAGGTCTCTAAAGTCTTGATTTCTCGTTGTTTGAG # Right flank : ATGGAGATTAACTTAACTATTTATCGTGCTTGTTTGAATGGAAAATCTTTATATTTGTTTTGGAAATACCTTTGACTTTTCATCTATCTGTGTTAAACTTAGTACAGTTTAATAAAGAAATCGTAAGTCTTTAATTGAGAGTACAGAGATGCTCCGAAGGCAGATAATTTACATGTTGAAACTAGAGAAAGTAACTAAGTAAACACTTTATTAAGAGGTAATTTTGTATGAACACGCAATTCACCAACCCTGATTGCCATACAAATTTAGTAAAGTAACCGACAAAAACAGTTACTGATTTAAATAGTTGAGATAGTAAATCTCGCATGTTCTTCGTGTCCCGTGTCTCTCAATTGAGATACGGGATTTTTTTATGGAAAGGTGAGTGCGAGAATGACAGAACGTATTGTATTAGATGATGCAGGCATGCAGCGGACTTTAACACGTATCGCACATGAAATTCTAGAGTATAACAAAGGTACTGAAAATCTTGTGTTGCT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 77135-77302 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZGF01000004.1 Staphylococcus simulans strain SNUC 1535 contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 77135 36 100.0 30 .................................... AAGAAACAATAGAAGTGTTTACTGAACGTA 77201 36 100.0 30 .................................... CATACCAAGTGAAATATTACGAAGCTAACC 77267 36 97.2 0 .........................G.......... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 99.1 30 GTTTTAGTACTCTGTAGTTTTAGGTATAAGTGATTC # Left flank : ATTATCAAGCGAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCATTTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTATTTGTTTAAAAAATATTGCTCAGTTTTAGAGGTTAATCCTGTAATATCCAACTATACTCTCGGTGATATGATTGTTTTCAATGATTTAGACCTTTATGTAGTTGTTGCATTTTTAAAGTACTGCAAATTAGAGTGTCAACTAGATATTGATCGAACAAAAATTTCTTCAGTATTATCGGCTTATCTATTTTCTTGACTATGATTAAATTATATAATTGTGCTAGAG # Right flank : CCATTTCTTGTAATTATCAACAATTGTCATGATTTTAGTACTCTGTAATTTTTAAGTAGCTTCGGCTGCTTTATTTAGTTCATTTACGAACATTCCGCAAAGTTTGTTTAGTTACTGTAAATAGGGTTTTTAAAGCAGGTAAGTTTGGTTACGTTAAAGATGAGTAAACTAGATAAACTTAGGAGGCCTATAATGAGAAAAATCGGTATCTTTTTAACAACGTTAGTTGCGGTAGCATTAATTTTTACTGGAATTGAAGACATTGTGAAAGGTGCAGAAGCGCAAGCAGCTAAAGCAGTTACGGGTGAAGTAGTTTCTGATGAATTGGATCCAGACGGTGACGGATGGGCAAATATCGGATTTGAAAATATCAAATTAGATGAACCTTACCAAACTAAGTTAGTTCAATTAACACATCTGAAAGATACAGGTAAAATGTCTACGACTGAATATAATGAAAAAGTTGCTGCATTAATTTCAGAAGCAAGATCAATTGATGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAGTTTTAGGTATAAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //