Array 1 553947-554307 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047883.1 Streptococcus mitis strain S022-V3-A4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 553947 36 100.0 29 .................................... GCGGCGACGAAGTATGGAACAGTTTATGT 554012 36 100.0 29 .................................... TCTGGTCGTCCAGAGAAGTTACGAGCAAA 554077 36 100.0 29 .................................... TACAGTCACACCCATTAGTGTCAAACTGA 554142 36 100.0 29 .................................... TGCTTTTTCATCTCTTAAATTATTTTCTA 554207 36 100.0 29 .................................... ATCGGTCGAGCACAGTTATCTCAGACATC 554272 36 97.2 0 ...................................C | ========== ====== ====== ====== ==================================== ============================= ================== 6 36 99.5 29 GTTTTATCGGTCACAATTTTGGAGACTACAAAAACT # Left flank : GATACAAAGGCCGTCAAAAGCACAAAGCAAAAATAGGAAAATTGACGAAGAAACTTCAGTTTCTAGGAGATTTTATCTTTTTTGCCAAGTGCTTAGGCCGTGTTCAATTGAGCATATCTTGATAATGAAGCTACTCTAAAATGGGTAGCTTTTTTACTTTTGTCACCTTACCTTGGTATGATCAAGTATTATCTTTGGTTACGGTTCCTAGCACTGTAAGGTAAAATAAACCAGAATGATTTCCCTTCGGGGAGATTTTTTTGTTTCACTAAAAATTTTGTACAATCTTCGGCTTGTCGCCTAGTCTATAAACGTTTTATACAGCAAGAATAAAGCTTTCTGATTTCAGAGAGCTTTTTGTTTTTATCCGCTTGCTTAGGCCGTGTTCAATTGAGCATATCTTGATAATGAAGCTACTCTAAATTGGGTAGCTTTTTTGTATGGATTTTATCCCAATCTCAAATCAGCTCTCTAATTTTCAGAGGGCTTTTTTTATTGAG # Right flank : CTCAAATGGTATCAGCTAATGACACCATAAAGGTGCGTAGCTACTCGGCTTTTCAAGCCGAGTAGCTGTCTGCAAGCCCCTTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATGGAAGTGGTCACCGAATTCCAGTTAGAAATTACTTTGTAACTACGTTTTGAGGAGGAGTAAAATGCTTTCCTATGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTGACCAATACAGGAGGTTTTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTATTTATTTTATTTGCACAGCTATCACAGAATAAACAAAAGTGGCATATTTATGCGGGTCAATATCTAGGCACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTACCTGAAGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCGGTCACAATTTTGGAGACTACAAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 892345-893195 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047883.1 Streptococcus mitis strain S022-V3-A4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 892345 29 100.0 48 ............................. TTTTTGAAGTGATGGAATTACTTCCTTGTCTGCATAATTTAGCATTTC 892422 29 100.0 51 ............................. ATAACGTCATAAGACAATGTAAGGTCTTTTTCAGCCGTATATTCTGTTCCT 892502 29 96.6 50 .C........................... TAGCCTCAGCGCTCTACGCTATTTGCGGAGCTTTTTGGCGTTTCGAAAAT 892581 29 100.0 47 ............................. CTTCTCGATTATCCCAAAAGGTTCCACCAATTGATATAGCATTGTCA 892657 29 100.0 51 ............................. GCCATAAACTCTGCTTTAGCCACAATACCTGCATCATACGATTGAACCAGG 892737 29 100.0 40 ............................. TTGATTTCTGGTGTTGACATCAAACCAAGAGTTTCAGCTG 892806 29 100.0 45 ............................. TTTGTATCGTAAATAGAATAAAATCTCTTTTCTCTGCGGCGAACT 892880 29 100.0 39 ............................. ATTTTTGATGATAGCTCATCGTGACAAGCTTGCCCCCAA 892948 29 100.0 52 ............................. TTATAGTCTGGCATCCATGAATAGTTCGATACCACTTGATATCCTTCAATAT 893029 29 100.0 39 ............................. GATCCATAAAAAACTTTTCCAACTTCATAAAGCCCAATA 893097 29 96.6 41 ...A......................... TTTTTCGAGTTCACCACACTCGAACACACCGCACACTTTTG 893167 29 86.2 0 .........................TTTT | ========== ====== ====== ====== ============================= ==================================================== ================== 12 29 98.3 46 GTTCTACCTTACCTATAAGGAATTGAGAC # Left flank : TCATAGTGACATTATCAAGAATCCTATTCCAATCAACTGTCTGAAAGTTAAGCCTGGAATCTCTTTTGAATTTGGCTTTTATCTGAATGAGTGTCAGCTTTCAGATGGAGTTCAAATTACGGTTAAACAAAAAATAGAGTTATTTAAAAGCATCTTGACTGATGTAGGCATTGGCGCCAAAACGAATGTTGGTTTCGGACAGTTAGAGTAGCAGAGCTCAATCGACAAGGGGATTTACAAATCGTATCTGAGGGATTCGAGCAACTCAGATAGCTCGAAAAGGTATATAGGAGCTTGTTCATATTAAGGAGTCTGAATATAAGAACGCATTTATAAAGAGCATAGAAACAAGTGAAGTCAGCTATCGTACAGGGATAGGAGTTCAATCTTAGTTGGCAAGAGCGATGGGTACAAAAAGATCGACCGACTTTTTTCATCGAAATCTTGAAAAAAGGCTTGCTTTTTGATAAAATCAATATAAAAACAGCGATATTACTGTC # Right flank : TATCCAACTGAAAAAAACTTGCGGAAGCAAGTTTTTTGTGGTATATTGGGAGTGTTTTCATGAGGAGATATCTTACTCGGAGGTTGTTTATGTCTGAGAGTCAATCTGTATTTAGTCACCATATCTTTGTTTTACCCTTTGCGGCCAAGGGGCTGGAGTCTTTTCCGAAGTCTTCCAATTGGAAGAAACTCAGCCAAGATGCCAATGACCTTCCCTATCTGAATGTAGAAGCTGGTGAAAAAAGCGAGCGTTTAAAGTACGCTTATCGTCGATATTTTAATAAAAAAGCAGAGGAGCTGATTTTCCGCAATCCTGAGCTGGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGATGTCTATCGGATTTCTTATTATAATCACATCGACAAACTGGAGTTTTATGACCTGACGCTTGACTATATCATGCTTCGTTATTTTCCAAATTTAGAAGCAGGTTTCCTGATTTTTTCAATGGAAAATCGTTGCAGAGATAAA # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 894875-895206 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047883.1 Streptococcus mitis strain S022-V3-A4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 894875 29 100.0 47 ............................. TATATTCTTTCGGATAGGCTTTATTAGATAATTCCATAAACGCTCCC 894951 29 100.0 44 ............................. TAACCATACTCAACCATAATGAATTGGAACTCTTTAGCGAACAA 895024 29 96.6 46 ...C......................... AAATGAGCTTTGAAATTGTAAATTGGTTTTACAATCATGTCAATGT 895099 29 100.0 50 ............................. ATAACCCAACCGTGTTTCTCACGAGCCTCAGCTTCTTTCGTTCGAATAAG 895178 29 82.8 0 ...C.....................CTTG | ========== ====== ====== ====== ============================= ================================================== ================== 5 29 95.9 47 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : AGTTTCTGATAAACTGAAGCTGCAGAAGGCTTACACGACCTTTAAAAATCAATTTTTACTTCCAGAGCTGTGCCCGCAGGAGCAGGCGATTGAAATCTACGAATTGTTGCAAACCTCTCTCTATATCGAGAAGCATATCAATCTTCTAGATAGTCAAATCAGTGAACTACATGATATCAGCCAGACGGAAGCAAGCAATAAGTTGAATGACAGAGTATTAGTACTCACAGTTTTAAGTATTGCATTAGCAATCATTCCGAATATCAAAGAACTGCAAGAACACTGTCTGACGATTTGCAATCTGTGCCTGACGTATTCATCTTGGCTTACTTTGTTTATTCCTCTTTTAACAGTTGCTTTCATCTATTTCAAAAAGCGAAAATAAATGTATATTATCTGGACATACGATGTTCATCGCAAGCGCGTGGCTAAGGTTTCGAAATCTTGAACAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : GTGTGTCTTTGTCTGTCTCCGAGGGCACCAAAAAAGCGAGCAAATTCTTGCCTGCTGGGAAGCATGAGAATTTGTTTGTTTTTTGTTTTGTAAGAATTATCAAGAAAAACTCTCCTAGTAGGAGAGTTTTTCTGTGTTTCAACCACAGATAGTATAGAGTTTAAGTTAGATGGCTGGTCAGTTTTTTGTTACTTCATGATAGTGTCGCGAATATTTATTGGTCTATTGGGTTACATTAAAAACATTATTTTCTACTTCGAATTTTCAAACATTAAATTTTCTGACAATTCATTGAAAAATGAGTGAAGACATGATATAATGAAACGTAAAATTAATTCAGTTTTCCTGAACCAATAGGAGTAAACAATGAAAAAACTAGGTTTTGTCCTTTTATCTTCAGCCTTGCTATTGACAGCATGTGCAGTCCGTTTTGAAAAATCAGCAGATACAACCGCTTCGTCTAAGGTGACAGCTTTGTCTGAAGACAAGCAAAAAATGCT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.06, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 4 1346926-1343724 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047883.1 Streptococcus mitis strain S022-V3-A4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1346925 36 100.0 30 .................................... AAGTGATTTCCCTTGACTGCGTGCAAAGTT 1346859 36 100.0 30 .................................... TTGCCTAATGATATTGACGAGTTATTTATA 1346793 36 100.0 30 .................................... TAACCATCTTGCCAGCACTAGACAAGCCTT 1346727 36 100.0 30 .................................... ACAACCGCATCACAACAGAAAACAACGCCT 1346661 36 100.0 30 .................................... GCGAAAGTCTCCAAACCGATTTCCCTGTTA 1346595 36 100.0 30 .................................... ACTGACGTTTATTGGAAAATTTCACTCGCT 1346529 36 100.0 30 .................................... TGGTCACCATACATTTCAGCGTTATCTGCA 1346463 36 100.0 30 .................................... TTTGGAAAATAAAAAGCGCCTTCCCTTTTG 1346397 36 100.0 30 .................................... CCAGACGGCTTAGTGACAGTAGCATAAAAA 1346331 36 100.0 30 .................................... ATGCCAGCAAAATCCATACGAAGATTATCT 1346265 36 100.0 30 .................................... CGCTCTGTTTCAGCATGTCCCGATTCTCTT 1346199 36 100.0 30 .................................... TGAGTGCTTTTGAATCAGTTTATATGCGCT 1346133 36 100.0 30 .................................... AATAAGTACATTCTATATCATTGTTCAGAA 1346067 36 100.0 30 .................................... TACGACCAGATTAAAGAAATTACATATACG 1346001 36 100.0 30 .................................... TGGATGCTTTTTGTGAATTATCTGATTTAA 1345935 36 100.0 30 .................................... CAAGCCAAGAATGTATAACGTATTCCCTCT 1345869 36 100.0 30 .................................... ATTTCTCACTATCCAAATTCGATGTGCCAT 1345803 36 100.0 29 .................................... CAAGTAACCGTTAAATTCTTCATCATCTT 1345738 36 100.0 30 .................................... TTCCAACAAGCTTTTTATCTTTAATAGTTG 1345672 36 100.0 30 .................................... TTGACCATTGAACGAAGTCATAGCCCAAAG 1345606 36 100.0 30 .................................... AGAACGACATGGAGATCATTATGACTATTG 1345540 36 100.0 30 .................................... ATGAAAGACAAAATCAAGGGTTACAAACCT 1345474 36 100.0 30 .................................... ATACTTACCCCAAACTGGAATGTTGAAGGG 1345408 36 100.0 30 .................................... TAGGTCTGGTCTATAATCGTGTTGTAATGT 1345342 36 100.0 30 .................................... TTAAAGCAACAAGTGATGATAGCATTGCTG 1345276 36 100.0 30 .................................... ATAAACGCCCACGATTTTAAAGCGGATATA 1345210 36 100.0 30 .................................... AAATTGATAATACGTTTAAAAGCGCTGTTT 1345144 36 100.0 30 .................................... TTAAAGCAACAAGTGATGATAGCATTGCTG 1345078 36 100.0 30 .................................... ATAAACGCCCACGATTTTAAAGCGGATATA 1345012 36 100.0 30 .................................... AAATTGATAATACGTTTAAAAGCGCTGTTT 1344946 36 100.0 30 .................................... CGAGAGCGATACTAGTATAGCAAAAAAAAG 1344880 36 100.0 30 .................................... ACATAAACTGTCCCGTACTTTGTCGCAGCG 1344814 36 100.0 29 .................................... CTATACTCCCTTAGTTGATATTAGAGCGG 1344749 36 100.0 30 .................................... AATTGCAAATGAAAGGTAACTTTGATTTGT 1344683 36 100.0 30 .................................... CAGACAACTCTATTACGGCTAAAATTCGAG 1344617 36 100.0 30 .................................... TTGATGCTTCTCCTTTGGCAACAGCATTTG 1344551 36 100.0 30 .................................... ATACCGCTTTGATGGGTGGCTTTGAAGATG 1344485 36 100.0 30 .................................... CGTCTTCATTGATGTAAAGCACGTCAAAGA 1344419 36 100.0 30 .................................... AATCACTTGCTGAAGTCTCTTACACTGACT 1344353 36 100.0 30 .................................... CCCGCAAAGCGTGGGAAGCAAATCTGGTTG 1344287 36 100.0 30 .................................... TCGAACAGTTTTTACATCTTTATTAAGTAG 1344221 36 100.0 30 .................................... ATACTCTGACCCTTTCAAGTCAACCCAAGT 1344155 36 100.0 30 .................................... ATCTCAAGAGCCTATCTACTTGGGTAGACT 1344089 36 100.0 30 .................................... CGGTCACAAGCCTACCTGCCAGGCCCACTT 1344023 36 100.0 30 .................................... CAGAGCTTGCAAAACAAGTTCAAGAACATA 1343957 36 100.0 30 .................................... TATCAAGGGTTTGCGAGGAGATAAGTGACA 1343891 36 100.0 30 .................................... TAATAACGGTAAACGTTGTAAGCAACTACT 1343825 36 100.0 30 .................................... TTAAAATCCAGATATAGAAATCCCGTGACG 1343759 36 91.7 0 ................................T.TT | ========== ====== ====== ====== ==================================== ============================== ================== 49 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTTTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTTACTAATCATAGTAACTCATTATATATTGTGTTGTTTCCTTCAAATGAAGGTTATCTTCACGTAACTAAAGAAGTAATCGAGGAGATTAATATCGTTTCTGATCATGCCGATCATTTTTATTCTTTAGAATTTATGTATGAACGATTTAGTAATCAATATCCAATAAATCAAATACCTAATGAGAAAGAATTTTTAATCTCTTTGAGAAAGATTGGACCGTATTTATTTAGTTCAGAAATTCTCCATATGAGTTTATCTATAGAGGATCAAGTAGCATTAAAGATTTTAAACAAATTATATCAGTATGAAATGAAAACAAAATTTCATATTGAATCAATCAATCCAATGTTATTGAAATATTTGAAAGAATGGTATTGACGAGTTGGATTTAAGATTTTATAATGGTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG # Right flank : TAGATAATATTAGCAATTGTCTAACTTATATAAAAAACCGCTCAGCCGAGCGGTTTCTATCTATTTCTCTTTTACAGTACCCATGTACGGATGGCATGGGCAACGCCAGATTCGTCATTTGTTTTGGTGATGTATTTGGCGATTTTTTTGATTTCTGGATTTCCGTTTTCCATGACTACAGGGTTGCCAACGACTTCCAGCATGGCACGGTCGTTTTCTTCGTCACCGATAGCCATGGTTTCATCTTTGGTCAATCCGAGTTTTTCAGCTAGGTGAGTGATGGCTGAACCTTTGTCCACATTCTTTTTAAGGAGTTCGAGGTAGAAAGGAGCAGATTTGTTGATAGAGTAGCGCTCGTAAAATTCGGCTGGTATCTTTTCGATAGCAGTATCGAGGATTTCTGGTTCATCGATGAACATACACTTGACGATTTCTTTATCGGCCATTTCTTCAGGGGTGCGGTAGAAGATAGGCATGCTGACGAGGGTTGATTCGTGCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //