Array 1 77700-77305 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEUY01000005.1 Escherichia coli strain KCJK8504 NODE_5_length_77712_cov_6.409473, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77699 29 100.0 32 ............................. CGCGAGCTATCTCCGGTTATATCACTACTCCT 77638 29 100.0 32 ............................. TGGAATTTTTGCTCGGTCATGTCGAACCAGAA 77577 29 100.0 32 ............................. ACACACCGAGATCCTCAAACCTGGCTGGAGTT 77516 29 100.0 32 ............................. CACGCGAAAAAAGGAGAGGGCGGGAAAAAGGA 77455 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 77394 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 77333 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGTATGCTTAG # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 98-675 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEUY01000427.1 Escherichia coli strain KCJK8504 NODE_427_length_779_cov_2.230061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 98 29 96.6 32 ............T................ GGCGAATACAAACGCTGGCGCAACGAGTCCTA 159 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 220 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 281 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 342 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 403 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 464 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 525 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 586 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 647 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTTAACATAATGGATGCGTTGTTTGTGTGATACTATTAAGTTGGCAGATTGCGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //