Array 1 60019-60181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQUV010000012.1 Corynebacterium diphtheriae bv. gravis strain 14-13 NODE_12_length_60334_cov_59.214493, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 60019 36 66.7 27 G....................C..TGATAGACT.C. TTTTGAGCAGCTCGCAGGCGCGGGCCG 60082 36 100.0 28 .................................... TGGGTGCATGTATCCCCACTGGGGGCGA 60146 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 3 36 88.9 28 ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : ATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCAGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCATCAGACACGCTCGTTCTCAAAAACCCTGATAAACTTCTCCTACGGCTCATCTCCGCTGGCGCGG # Right flank : TGGGTGCATGTATCCCCACTGGGGGCGTGAACTGCTCCCCATTAGTTGGACTGAGAAATCAGTTACCTACTAGTGGGGAGCAGTTGTATGCGTGCACGTAGTTCGTTGTCGGCGGGACAGCGGGAAGAATTAGTGGCTCTTTTCGAGCAGGGT # Questionable array : NO Score: 4.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.17%AT] # Reference repeat match prediction: F [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 41243-42064 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQUV010000017.1 Corynebacterium diphtheriae bv. gravis strain 14-13 NODE_17_length_44781_cov_56.153670, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41243 29 100.0 31 ............................. GCTTTTCCGCCAACTGCCGCATAATCGCCGC 41303 29 100.0 32 ............................. GCGGAAACCACCCACGTTGTGATGTGGGATGA 41364 29 100.0 33 ............................. AATGGGTAAACAACAACGATTCATGGACGGTGA 41426 29 100.0 32 ............................. ATTTCAGAACATCAGGATGGCATGAGCCTTGT 41487 29 100.0 32 ............................. GTGACCCGCGTTCACACCACTACGTGCCCCCA 41548 29 100.0 32 ............................. AAATCCTGTTCCACCCGCCCTGTAGGCGGTTT 41609 29 100.0 32 ............................. AACAAAAGTTCTCGCAAACTGTCCAAGAACTA 41670 29 100.0 32 ............................. CGGTGGGGGCGCTTTCGGCTCCAAGCCGCCAG 41731 29 100.0 32 ............................. TCCACTGCCGCTAGTGCGCACCAGCTGTTCAA 41792 29 100.0 32 ............................. AGACGGCTTCCAACGCATCGTGCTCACCACCG 41853 29 100.0 32 ............................. GGTCAAGTGTTGGTTTCTTTCGCCGATAATCC 41914 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 41975 29 100.0 32 ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 42036 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATCACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : CGGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCTCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 132-551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQUV010000023.1 Corynebacterium diphtheriae bv. gravis strain 14-13 NODE_23_length_20440_cov_58.211638, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 132 36 100.0 28 .................................... TGCAGCAATGGAACTAGCGCAGACGATA 196 36 100.0 28 .................................... TATGTGGCAGTTAACGCCGCCGACCTTG 260 36 100.0 28 .................................... GTGACCCGCAACCTCCTGGTGTTCCGGT 324 36 100.0 28 .................................... AGCTTGTAGGCTGCGTTTGTGTTGGCTG 388 36 100.0 28 .................................... TTCCATCCGTCTGGGGTGTCTTGCCCCG 452 36 100.0 28 .................................... ATAATATATCTGTGGGGATAAAAGCCGA 516 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 100.0 28 ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : AGTGGTATAACACCGAACGCATCCAACAACGACTCAAGGGCCTGACCCCGATGCACTATCGGAATCAGGCCCTTGAACCCCTAACCACCTAGAATTAAACCAGTCCAACTTTTGGGGGCTAGTTCAGGCGAA # Right flank : CAGGTAGCCCAAAAAATCCTGTTTAACTTGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //