Array 1 861150-857969 **** Predicted by CRISPRDetect 2.4 *** >NC_007705.1 Xanthomonas oryzae pv. oryzae MAFF 311018, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 861149 31 100.0 34 ............................... TCGCCCTGTGCCTGTGATTAACTGCCCCGTCTAG 861084 31 100.0 33 ............................... GACATACGCAAGATCCGTGCGCGCATGTCGATG 861020 31 100.0 36 ............................... AAACCTATGGCTTGAGCAGGGAGGAAGTTCTCCGTT 860953 31 100.0 35 ............................... CACAGGGGCTGCAACTCAGTCCTGGGGCTTGTTGA 860887 31 100.0 35 ............................... GTACTAGGTAGAGCCTATCCTTGGGCCGTGGGTGG 860821 31 100.0 34 ............................... TTAGTAGTTGTGCTACTAAAGGTCAGCTGCACCC 860756 31 100.0 36 ............................... ATACAATACTCCCGTGTGTTGGTGTGTTGGCAAATA 860689 31 100.0 35 ............................... CAGTGCAGCCAGCATCCTTGCATTGACTCTCCAAG 860623 31 100.0 35 ............................... AACCTAAGCAGATGGGAGGGCTACCTTGCAAGACG 860557 31 100.0 35 ............................... CGGATGTTCGCCGGCGTGCATGTTGTATGGCGCAC 860491 31 100.0 35 ............................... GCCCTGGAGGCACAGCTGGATGGGCATACAGCCGG 860425 31 100.0 34 ............................... ACGATGGTACAACCACGAACTGGACAGACAATTA 860360 31 100.0 35 ............................... TGGTGCTACCGGCACGGCCTGCATGCGCCACGGAT 860294 31 100.0 34 ............................... TGGAATGTTGTGGACAAGGTAAGAGGCGTTGGTG 860229 31 100.0 34 ............................... GCGCGATGACGTGAGTGGTGTCTGTCTTCTTCGC 860164 31 100.0 35 ............................... GGATCCCTGGCGAACTGAGTTACCGTGTTATGCAG 860098 31 100.0 35 ............................... TCTCCGTTATTGGCCGTGATGATCTTAATGATGGC 860032 31 100.0 35 ............................... TGGGTCGATTTGCCGGGGCTGCTCCTGCTGCGCAA 859966 31 100.0 35 ............................... AATCGCTGGTGACTGAGGTCGACAAGGCCGCTACA 859900 31 100.0 36 ............................... TCCGGTAGACGGGGATCTTGTGTTGATGAGGCAGTG 859833 31 100.0 35 ............................... CTGTTAACTCCTGGCATTAATGTGGGGAGGGTTGA 859767 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 859701 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC 859636 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 859571 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 859505 31 100.0 35 ............................... TTGTGTGGCTGTATCTGCACTGTGTGTCGTAATAT 859439 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT 859374 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC 859309 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG 859245 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 859180 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 859115 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 859051 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 858985 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 858920 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 858853 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 858788 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 858720 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 858654 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 858590 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 858525 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 858458 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 858394 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 858327 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 858262 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 858196 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 858131 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 858064 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 857999 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 49 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //