Array 1 32141-30176 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKQ01000042.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 32140 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 32079 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 32018 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 31957 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 31896 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 31835 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 31774 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 31712 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 31651 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 31590 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31529 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31468 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31407 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31346 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31285 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31224 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31163 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 31102 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 31041 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30980 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 30919 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 30857 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30754 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30693 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30632 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30571 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 30510 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 30449 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30388 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30327 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30266 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30205 29 96.6 0 A............................ | A [30178] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49582-48272 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKQ01000042.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49581 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 49520 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 49459 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 49398 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 49337 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 49276 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 49215 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 49154 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 49093 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 49032 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 48971 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 48910 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 48849 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 48787 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 48726 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 48665 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 48604 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 48543 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 48482 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 48421 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 48360 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 48299 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //