Array 1 875-450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBWZ010000003.1 Microbispora sp. H10949 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 874 30 100.0 37 .............................. CCGATCGCCGCGTACGTCAGCCCTTGGGCGCGTAGCT 807 30 96.7 35 ....................A......... ATGGGCGTAGCCGCCGCACAAGGCATGTGGCACCG 742 30 100.0 35 .............................. CCTAGCGCCCGCCAGTGTGTCACCGCGACGCCATC 677 30 100.0 36 .............................. GTGACCGGCACCCGACTGCCGGTCTGGGTGAGGCAG 611 30 93.3 37 ....C....G.................... CGAACCGCGACGGTCAGTGTGTCGGACGTGCAGGGCA 544 30 96.7 35 .........G.................... CCGACCCAGACGAGGATCGCGTCCACAGTGCCTTC 479 30 93.3 0 .......G.G.................... | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.1 36 GTCCTCATCACCCCTACGAGGGGTCGCAAC # Left flank : CCGCAACGTCGGCTACGACGAGTTGCTGTATCTGGAGGCGCTTCAGCTCACCCGCAGATGCCTGGAGGGCACGCCGTACAAGCCGTTTCGGATCTGGTGGTGAGACGACGTGTACGTGGTCGTGGTCTACGACACGCTGGCGAAGCGCAACGCCGCCATCCTGCGGCTGTGCCGGCAGTACCTCCACCATGTGCAGCGCAGCGTGTTCGAGGGAGCGCTGAGCCCGGCCCAGCTCAAGAGATTCCGCCATCGAGTCGAAGAGGTGATCGACCAGTCGTACGACAGCGTTCTCGTCTTCACCTTCCCACCCGGCACCTCCCCCGAACGCCAGGAATGGGGCGGCGCCCAGCCCGCCCCCACGGACATCCTGTGAAGCACCCCTTGATCATCATGCTGATTGCAGCAAACCTCCCGGGTTCCGTGCACAACCGGAGGTCCACTGCAAACTTTCGCCTCAACCAGGCGCTAAGATCCAGCCCGACCTGCCGCTTTATGGTGGG # Right flank : CCTGATCCTGTCGGCGGATCCTGAAAACTGACCCCCTGAGGTACTCCGAAAACTAACCCCCTCCGAGACCTTGGAGGGTGCTGAAGGTGGAGGACTGGGCGGAGATACGCCGTCTGCATCGGGCAGAGGGCGTGCCCATCAAGGAGATCGCCCGGCGGCTGGGCGTGGCCCGTAACACGGTGCGGGCGGCGTTGGCCTCGGACCGGCCGCCGAAGTACGAGCGGGCCCGTCGCGGCTCGGTGGCCGATGCCTACGAGCCGCAGGTGCGGGCGCTTTTGCGGGAGTGGCCGAGGATGCCGGTGCCGGTGATCGCGCAGCGGATCGGCTGGCCGTACTCCGAAGGGCCGTTGAAGAAGCTGCTGGCGCGTATCCGCCCGGAGTATGTCGGCATCGATCCGGTGGATCGGGTGACCTATCAGCCCGGCCAGCTCACGCAGTGCGATCTGTGGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 9271-9970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBWZ010000003.1 Microbispora sp. H10949 NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 9271 30 90.0 36 ..GGG......................... CCACAGCACCCAGCCCCTCGGTTTCGGCTGCCACGG 9337 30 100.0 36 .............................. TCGAATTCAACGACCCGCCGTTCGGGTCCTCGAAGT 9403 30 100.0 40 .............................. AGCGGGTACACCGGTCTCACGTCTGTCATCCAGGGGACCG 9473 30 100.0 38 .............................. GCGCGATGCCCGGCCGCACCGTACATCTCAAGATAGGG 9541 30 96.7 37 .........A.................... CGGCACAGGTTGTAGCGCCCGGACGTGCAGAGCGGGC 9608 30 93.3 35 .........A.....G.............. ATGTCCTTGGTGCGTAGCTCGTGCAGGGCGCATCG 9673 30 93.3 35 .........AG................... ATGCGAGGCATGGGGGGATCTCCGGGGGTGTGGGG 9738 30 100.0 39 .............................. CTGAACCCGTACCGGGTCGCGACCTCTTTCCAGGTGGGC 9807 30 90.0 36 .....A.......AC............... ATGACGAATCCGGCGTCGGCCAGGCCCTGGATGGCG 9873 29 80.0 41 ......G.GA.....G...-....T..... CTCGATCCGGCCGGGCTCGCCATAGGCCGGCATCTCCATAA 9943 28 83.3 0 .....T.........--.G..........T | ========== ====== ====== ====== ============================== ========================================= ================== 11 30 93.3 37 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : TCCGAGGGCGTACGCCCCGCGACGCCGCCGCGCCTGGGGAAAGACCGGCGCGCTGTGCCCCAGCGGAACCATGCCGTACGGCCCCGCTCCCTGCGCGTGGAGTTGCCGGCCCAGGTCCGGCGCTTCCCGCGCGAGCAGGTCGTACGCCAGGGACCGCCCGGGAGCCAGCACCTTCGCCCACGCGAGCTCGGTCGCCGCCGTGGCCACCTCGATCCGTACTCTCACCGCTCTCCTCCTTGCGTCTGCCTTCGTGGAACACAGATGGACGAAAGCCGAGACCGGTGCCTGACCTCGGCGTTCTCCGTGGCGCGCCCACCTGGAGGACGAGACGGGATGACGACGGCGGGCGCGAGGGTGGATTACGCTTTTTCCGTCATGACGACGACCCTGTCGATCATGGTTTTGCAGCAGATCTCTCGGGTTTCCTGCACAACCGGAGGTTCGCTGCAAAACGGCTCTTTCAGTAGCCGCTGTTGCACCCCAAGACCTGCGGCTTTACC # Right flank : TGGCTGACTGGCGACGTCCATGCCGATTGGCAGCATGTCGGCCCGCCCATCGCGGTTTATGACTGGTTGCGAGAGGCGAGGTCGCGGTTGCTGGTCTCGGGGTCGGTTGTTAGGAGTTCGGCCCAGACGGCGTGGCCGATGGCTTGCGTGCCGCGGAAGCCGACCCGCGATGCCAGGGCGGCGACGATGGCCAACCCTCGTTGCCGCTCGGCCAATTCATCCCCTTTCCGCTGCGTGAAGCTGGGGGTGCCGCCCCAGCCGCAGTCGTAGACGGGGATGCGGATGATTTGGGGCTTCCGGGTGACCTCGACGATGAATGTGCCGCCAAGCTCGCCACTGCTCGTGTGTACGACGGCGTTCGCGGCGAGTTCGGCGACGATCAGCTCGAGGTCGTCGCCCAGAGGTGAGTCCTCGAGCAGGAACCGTACGAAGCGGCGGGCGCGGGACACCTGCTCCAAGCGGCCGGGGAAGGTACGTCGCCAGGCGAGACCACCTGGGCG # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 29991-29369 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBWZ010000003.1 Microbispora sp. H10949 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 29990 30 100.0 37 .............................. CGGACCGGGACAACTGGGTGCGGGTGGGAAAGGTCGT 29923 30 100.0 37 .............................. TTTGCCGTTAGGCTTGCGTCAACGTGTAGGCGTTGAG 29856 30 96.7 34 ............................T. TTTTCCCCGACTGTGAACTTGACGTTGTCACCGG 29792 30 100.0 36 .............................. TCCTTGATCTCGACCAGGTCCATCCTGATCTCCTTT 29726 30 100.0 37 .............................. GCGTGGAGCGGGGCGGCGCTGCCGCCTCCCGGCACCT 29659 30 100.0 34 .............................. CCGAGCAGTTCGGCGCGTTCGCCTCTGTCGCGCG 29595 30 100.0 35 .............................. CCGACTTTGGCGGGTGCGGCGATGCGGACGTCGTG 29530 30 100.0 37 .............................. TTGGCCTCGTCTGCCTGCGCGTTACGGCGCGGGTCCA 29463 30 96.7 34 ...................T.......... TCAGGTAGGGCGTTGGCAGTGGCGCGGATGCGGC 29399 30 96.7 0 ..........................T... | G [29371] ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.0 36 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : CGGAGCCTGCCGCGGATGACACGGTCCAGGAGACGCGGCCCGCCGTGCCCGCGCCTGCGCCGCCTGCTGAGGCGGCCACCCCGGCCCCTCAGCCGCGCCCACGGCAAGCGGGAGACCGTGCGAGAGACGAGGCCAAGGGCGGCACGAAGGAAGGGCTGAAGGACAGCCCGAAGGACACCGCCAAGGAGGGTCCGAAGGAGTCGAAGCCGGAGACTCCCGCCCCTCCGGTGCCGAAGCCCGCTCCCCCGCGTCCACGCAAGTCGCGCGGCCGGCGGGCGTCCGTACCGACCTGGGACGAGATTATGTTTGGTGCCCGCAAGCAGGACTGACAAGCGCGACAGCGCTCTGCCGACTGCTACGCGCTCATCGCGCCATGTTCAAGGAGATGATCTTGGTTGTGCAGCGAACCTCCCGGTGTTTCTGCACAACCGGAGGTTGGCTGCAAAAAGCCTCTTCTGTCGTGTCATCTTGCGTACGCCCACCTGCGGCTTTACGGTGGG # Right flank : GCAGCTCAGGCACCAGGGCCAATGAGAACGGGTGGCCCAAGTCGGCGGCGGTGACCTGGGCCAGGACTTCCGGGAGGAGGTGCTACTGGACGGTCTTGGCCTCGAACCGCTTGGCGGTCCAGTCGAGACCGGCCTGGCAGACCTGCTTGACCCAGCCGCGTACGAGCGTCTCCGCCTCGTCGGATCCGACGCCGAACTGCGTTGCCGTCCAGGCGACCAGTTCGCTGTCCGGCTTGGAGGCGGCGGCGCAGATGCGGGCCAGCAGCAGGCGCACTGTACGGTCGCCCTCGGTGAGGATGACGGAAAGGGCCTTCCGCGCCATCGTCTCCTCCTCGGCGCGGATGACGAGGTCCTCGGGGCTCGACTCGGGAACGGTCTGCCACGGCAGGGGCTGGTCGTCGTGGAGATAGAGAGCCACGTTGGCCATGAAGAAATCGCGCCGCAGCGACCGCAGCAGGTCGAGTTCCTTTCTCAGCAGGCGCCGTGCGGTAGCCAGATCC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 92443-90161 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBWZ010000004.1 Microbispora sp. H10949 NODE_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92442 29 96.6 32 ............................T GACCATGACTGACTATCTCCGTGGGGAGGGCT 92381 29 96.6 32 ............................C TGCGCCCCGACCGTCGTGATTCGGGCCAGGCC 92320 29 100.0 32 ............................. TGGTCGGGTCTGGTCACCGGGCACCGTCCTTG 92259 29 100.0 32 ............................. CGCTGTGCCGTGGCCTTGATCAGGCGGCAGAT 92198 29 100.0 32 ............................. GGCAGCGCCACAGCGGCGCCGGGCACGTCGAG 92137 29 96.6 32 ............................C TCTAGGTAGCCGGTCTGGTGCGCTGACGATGG 92076 29 96.6 32 ............................C CGGCGATGGACGCGATGAACGCCAGAAGCGCC 92015 29 96.6 32 ............................C GGGTTCGTGGTGCCGTAGTCGAGCGACAGGAC 91954 29 100.0 32 ............................. CCGTGGCGGCGGCTCGTGCAGCGCGCCGCCGA 91893 29 100.0 32 ............................. CATCACGGGCCGCCGAAGCCTACGGAAAAGAT 91832 29 100.0 32 ............................. TACTCGGCCAGCGCCTCCTCAGCCCTACGAAT 91771 29 96.6 32 ............................T CGACGACGTACTCGGCGAAGGTGAGACGGGAC 91710 29 96.6 32 ............................A ACTTTACGAGAGTGTTGCCGCTGTAGTACGTC 91649 29 96.6 32 ............................C TGGGCGTCGGCCATCGGGACAGGCATGACCCG 91588 29 100.0 32 ............................. GAAGGAGCACGACCCGTGACCTCCATGATGGC 91527 29 96.6 32 ............................C CCGTGGCGGCGGCCGTGCATCAGCGCCTCGGC 91466 29 96.6 32 ............................C CGTCGTGACGCTCGCCACCGGCCGCCCGCTGC 91405 29 96.6 32 ........................G.... CTCTGAGCGCGCTTCTGACGGTCCGCGAGCCA 91344 28 89.7 32 ........-...............G...C TGGGTGGCGCCCGCGCTCCGCGAGCCGCTGTT 91284 29 93.1 32 ........................G...C GCCTTGGCGGTCTTCTCGCGCTTCTTCGCGTG 91223 27 86.2 32 ........-.-.............G...C CGACAACAGCAGTAGCGTCGTCACGGATAGAG 91164 29 96.6 32 ........................G.... GTCGGGGTCTCCCTGCGCACCGTCCAGAAGTG 91103 29 93.1 32 ........................G...C GTCCACGAGGGGTCGGCGTCGCCGTCGAGAGC 91042 29 93.1 32 ........................G...T GTCAGTCACCGGTCGTTACCTCCGGAGTGAGT 90981 28 93.1 32 ............-...........G.... CCCGGTGGGGCTTCGTGGTGGGACGTCGGCAA 90921 29 86.2 32 ..T........A..........C.....A GGGAGCGGGCGAGGATGCGGGCGCTGGAGGTC 90860 29 89.7 32 ...........A..T.............C GCCAGGGCCTCCGCTTGAGGGACCTGTCCGAC 90799 29 89.7 32 ...........T.........G......A CTGATCAACGTGGCGTCGATGATCGTGGTCGT 90738 29 96.6 32 ..............T.............. TTCAGCGCATGCGTGAGCAGTGGGAGCGTGAG 90677 29 96.6 32 ...........A................. TAGAACGTCCGGATCATCTGCGGTTCGCTGCC 90616 29 93.1 32 .............T..............C TCGGTCAGGCCCCGGACCGGGGTCCATGTCGG 90555 28 96.6 32 ........-.................... CCACCCCTATACGGGCTAACTCAACAGTGGAA 90495 29 100.0 32 ............................. CGTCGATCATGTACTGGACCGGCGTTCGGACC 90434 28 89.7 32 ...A....-...T................ GCGAGTACCGGACCTACACCGTGCAGACGGGC 90374 29 86.2 32 A..............A........A...T GTCCCGTCCTGCGTATCGCGCGGTGAGCCCCA 90313 29 89.7 32 .......T..........C.........C TCTACATGGGTCCGAGCGTGGGGTATGGGGCG 90252 29 89.7 30 ........................G..TT CTGGGTCCGCCTGGCGTCGACCTCGATGCC CCG,C [90235,90240] 90189 29 75.9 0 A..........AT......C.G..G...C | ========== ====== ====== ====== ============================= ================================ ================== 38 29 94.4 32 GTCGCCCCCGCGCCCGCGGGGATGCTCCG # Left flank : GAGGACGTGAATCAGCTCTGGGACGAAAAACACGGCGCCGTATCGGGCGGCATCAACTGGGCCGATGAATCCGACCTGGCCATCAACCTCGGCCTGGACCTCGTGCAGCCGAGCATGGGTGAGGACCACATCGCCGTCATCGGCCCCGAATTCGACAGCCCCGGCCCCACATCATGACCGTCGTCGTCCTCATCGCCGCTCCCGAAGGGCTACGCGGTCACCTGACCCGCTGGATGGTCGAAGTCAACGCCGGAGTCTTCGTCGGCAACCCCAGCCGCCGAATCCGCGACCGGTTATGGGATCTGCTCGCCGCCCGCATCGGAGACGGCCAAGCCATCCTCGTCGAACCCGCCGCCAACGAACAAGGCTGGGCCGTCCGCACCGCAGGCAAAGACCGCTGGCACCCCACCGACTTCGACGGCCTCATCCTCTCAGCCCGCCGCCGAATCCAACCGAATGAAAACCGCCCCCACACCCGATAAACCAGCAGCTCGGCAAGT # Right flank : TGTGGGACGAAATTCAAGGCTGCGTTGTTGAAGACGCCCCGCGCCGCTGGGTGACCCGACTACCAAGACCAGGCGCGACTAGAGCGAACTGCTGGCGATCAGTGAGCTACTGTTGGCCAGCGCAGCTCCGAGCTTGCTCATGAGCGCCTCTGGCAGTCGTCCGCATTCCAGCCCGCTCAGATGAAGTATGTGCGTGAGAGCGACGCTGTCATTCTCTCCCAGCGACGTCGCGAATCCGGGGCGTCTGAGCAGTTCCCGGGCGGCGTAGCCGTTCTGGGACGTCACCACCCCTGCGATCAGTGCGTCGGCGACCGCGCGTCCCTGCGGGCATCCTATTCCGCCGATGGCGTCGATTACTGACAGGCCCAGCCGGGTTCGGAACACGACCAGGCCGGGCGCGGCGTGGTCAAGCCTCTGGTAGCGATCCAGCATCACGGAGAGGACCTCGCCACTCGAACGTCCGGGTCGGCAAAGTGCGGCCAGGCACGCGGTTACCGCGT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCGCCCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [31-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 102755-103697 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBWZ010000004.1 Microbispora sp. H10949 NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102755 29 96.6 32 ............................G CGCCTCAGGATCGCCGTGCAATGGGCGCTGTA 102816 29 89.7 32 ..T........A................A CAGTTGTAGGCCTGCCACGTCGTGTCGCTGGT 102877 28 93.1 32 ...-.......A................. TACAAGCGGCTCGACCAGCCCCCGGCCGCGCC 102937 29 96.6 32 ............................G AGGAAGCGGTTCCACACACCGGTTGCAGCACC 102998 29 89.7 32 ........T..A..........C...... ACGCTTCACACTGTCGCCGCTCGATCCGGCGC 103059 29 100.0 32 ............................. ACCTCACCCGCGGGCGACACGTCGGAGATGAG 103120 29 93.1 32 .................A..........G GAGTCGGGCACCCCGTTTGGTTTGTGGCAGGA 103181 29 96.6 32 ............................A TACCTCGGCTTGCTCAGCACGCTGACACTGGG 103242 29 96.6 32 ...................A......... GCGGTGCCGGGACCCCACAGGACGCCGTTGTA 103303 27 93.1 32 ........--................... TCCTGCTCGTAGTCCCTGTGCACGAGCTGGCT 103362 29 96.6 32 ............................T CAAACCGCTATGACCCCCTCGGGATCGTCGCA 103423 29 96.6 32 ............................A CCATCTCTCCGGAGAACCAAATCCTTGGTACG 103484 29 100.0 32 ............................. TGGTGGCAGCCGAACGCCACGGACCTGAAGGG CGA [103494] 103548 29 89.7 32 A.............T........A..... GCCAGGGTGCGGTCGATGGTGGCGTTGTAGAT 103609 28 89.7 32 .................-...T.A..... CGGCACGAACGGAATCAACGGCCACTCGCCCG 103669 29 93.1 0 .........A..................T | ========== ====== ====== ====== ============================= ================================ ================== 16 29 94.4 32 GTCGGCCCCGCGCCCGCGGGGATGCTCCC # Left flank : CCGGCCCGTGGACACCCAGGTCAGCCCGGTCTCCCGAACAGCCCGCGCCCCGGCCTCGTCCATCTGCTGGAAGGCGGGGGTCGCCTTCCCGCAGTCATGAACGCCGCAGATCCAGCCGAAGAACCGGCGCCCACACCCAGGACCTCCCGCCGCGTCCTCCAGCCACGCCTTCGTCGATGGAGCGAGGTAGTGATCCCAGATCTGCTCGGCGACCGCAGCCGTGTCGAGAAGATGACACATCAGCAGATTCATACGGCCCGCCGCCCTCGCGGCCGATTTACCCCACAAAACACCTAACTGACGCATCACGTCCGGGTCCGCGAACTCAAACTCGTACTCGCCCACCATCTCCTCCTTCATCACCGGCTGGTCAGAACATTAGAAGTCGCCACCGACAGGAACAGACGACCGTCAGATAGGGTCCGGTGAGATACGAACGGCGTTGAATCGAAGTGAATGAGAAACGACGTTCTCAGCCGGAAACCTCCAGGTCAGCAAGT # Right flank : TGCCCAAGTGGCACCGGGCGTCTGCGGCGTGTATCCCCCAGGCTGCCGCCGGGCACGTCAGTGAGACCCACGAGGGCCATGCTCTCCTCGCCGAAGGGGTCAACCTAGTCAAGGAACTCCTCGGGATCGACGACCGTGATCGTGGCCTCCAGCCGCCTCGCCGCATTGGCCGCGCTGATCCCACACCGTCCTGCGGGAGATCCTCGGACGCTCCGACAATCAGGTCACCATGACCATCTACGCCCATGCTTCCCTCGACGACAAACACAAGGCACTCAGCAAGCTAGGCGAGGCTCTGGGCTGATCTCGTCTGTAACCGAGAAGCGCTCTGGTTTGTCGGGGCGCTTCTTTTGCTGGTCATCAACAGAGCCACTTCTCGCTGTGGTGGTGCCTTATCGGCTCCGGTTCCGCACCTCGTAGGAGCATCAGGCGGACGCGCTGGCGCGGCGGCCGTCTTGCTCCTGGACACGTGGCGGCATCGTGTTGTCGGTGCGGCCCAC # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 109786-110485 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBWZ010000004.1 Microbispora sp. H10949 NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109786 29 93.1 32 ...........A........A........ GTGCAGACCCTGCGGTCGGCGTTGCAGGAGCT 109847 29 96.6 32 ..T.......................... ACGTCGGTGGCGGAGTTCCGCGCCGCGGCGGC 109908 29 96.6 32 ............................C ACGTAGGCGGGGGTGTGCAGGACGTCGGGTGA 109969 29 93.1 32 ....................A.......T CACATTGTCGGCTGCCCGCTGGAGTGCTCGTA 110030 29 89.7 32 .........CA.................T CCGTCGGTGGCCGGGACGGTGACGATGGAGTG 110091 29 93.1 32 .......................A....C AACGGTTTGGATTGCCTTCGCTTTCCGGCGCG 110152 29 89.7 32 ..................A....A....C TTCGGGGCCGCGGCGAACTTCACGATCCTGGC 110213 29 100.0 32 ............................. GGCTACCAGGCGGTCACTGGTGTGGCCGAGTG 110274 29 96.6 32 ............................T TCGGCTGGGCATCGGAGGATCACCGCGACGTC 110335 29 96.6 32 ...........A................. GACGGCGCCAAGATGGGCGCCGGGTCCTCGGA 110396 29 96.6 32 .......................C..... ACCCCCACGAGGTCCTCCGCGCCACCCTCCCG 110457 29 89.7 0 ...........A...........A....A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 94.3 32 GTCGGCCCCGCGCCCGCGGGGATGCTCCG # Left flank : CGGAATCCAGGATCTGACCCGCCAGGTCCAGGAGGATCATCTCGCCGCTGCGCTCGTAGTCGTTCAACAGCTCATCAGCGAGGTAGTCGGGGTTTCTCAGCCAGAAGTCGAGTTTCTGCAGACGGCTCTCCGCGTGCACGACGGCCACCGCGTTCGCCGGGACATCAGGCCCAACCGGAGTGCCGACAGGATCGGCCACGGCCGCGATGAGCAGCAGCAGTCGGATCGCGTCAGAAAATCGATCGCCCTCAGAATCCGCAGACACTCACACAACGTAGCCACGGCGGTGCAGGCGATCAACCGGTTGCAGCGACCCCGGTATGAAAGGTACACATTGGAGATCCGGGGCCGCCGCGCGGCCGGTCGCCAGGACGCCGCCGCCTGCTCTGCCGACTGTCCGCACCGACATCCCCGACTGGCAGGCACCGTCGATCTGCAGACAGGCCAGGTGAGGGAAGAGAACCGCGAGCAACTCCGAGATCGGCACATGGGGACAGGGC # Right flank : ACTGCGGCGGGTACGGAAGTGACCGTCGCTGTCGTCGGCCCACGCCTGCAGAGGTGATCTCACTTACGCCCGCCGAGAGCTGCACGAGATCAAGACTGCCTGTCCACTGGATGCTCCTGCCCTCAGCCGGAGCACACCGATGGGCTCAAGTGAAATTCGCCCGCGAGACCGGCGTTCTTGACCAGGCGGCCCCATCGAGGGCTGCGTGCGGAGACCCGGGCGATGGCTACGCCGGTCTCGCGGACCGCTTCCCCCGCAAGGACATCTGAACTGGTGGGTTTGACGGTGTCGGCAACCACCAGCACCGCGCGGGCCGAGCCGTCCCAGCCGACCGCCACTGCCGTACGACCCGCCGTCTGGGCCTCCTCAAGGGCTCGTCCGAGGTCGGGAGTCAGATACTGGGACCACTCAGCGAGCAGCGCCGGGCGGCCGACCAGGACGGCGTGTCCCCCGACGATCCCCTGCACGCCCAGCCCCTCAACGTTGGCGAACTCCTCGGG # Questionable array : NO Score: 3.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //