Array 1 12507-11256 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCP01000004.1 Salmonella enterica subsp. enterica serovar London strain 90-0264 NODE_4_length_239434_cov_4.15109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12506 29 96.6 32 ...........................T. CCAGCGGAGAGCGAGCTATACCAGGCTCAATC 12445 29 96.6 32 ...........................T. TCCGGAAAATCTACCGTTCCAGGGCGGGGCCG 12384 29 96.6 32 ...........................T. GGAACCAAGTATACGCGTAGACAGCGTCAACG 12323 29 100.0 32 ............................. GAATTGGCGTATCTGTGTCTTGCCAGACAGGG 12262 29 100.0 32 ............................. CGTAGACCACCTCTTTCGATATGTGAGTGAAG 12201 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 12140 29 100.0 32 ............................. ACATAATCCCCATGTACATAATTTATGCTCCG 12079 29 100.0 32 ............................. ATCCAGCAGAGCTACAGGAACGCCGCAAGGCC 12018 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 11957 29 100.0 32 ............................. TTAAATGCATCGCGATCCCTTGCAATTATAAC 11896 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 11835 29 100.0 33 ............................. GGCACGTTTACCGTTCCGGCTGGGGTTTATCGT 11773 29 100.0 32 ............................. GGCGGATCCACGATAATTTTGTCGTTATGTAT 11712 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 11651 29 100.0 32 ............................. GCGCTATTGTATATCGACCATAAACATCGGCT 11590 29 100.0 32 ............................. TCCCTGCTGGCCGTTCTGGAATTGCGTAGCGC 11529 29 100.0 32 ............................. CCGGAGCCTGACCAGGATTTTTCCGCCGTGTA 11468 29 100.0 32 ............................. GAATTGCAGGAGTGGTTTATCGAGTGTTTACA 11407 29 100.0 32 ............................. AATCAACGGATCTTGCTAATGTAGTTTCTGCA 11346 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 11285 29 93.1 0 A...........T................ | A [11258] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCTGGTTTGCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGTGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTACTGGGTCTTAGCAACAAGATTTTACTGGCGGATGAGATCCATGCCTGTGATGCATGGATGTCCCGAATACTTGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCTGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCAGGTCACACAAACAGAGCTGATTTCTCAGCGGGTTGATACACGCAAAGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACATAGTGAAGAGTCGTGTCTTGAACGTATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22796-21914 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCP01000004.1 Salmonella enterica subsp. enterica serovar London strain 90-0264 NODE_4_length_239434_cov_4.15109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22795 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 22734 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 22673 29 100.0 32 ............................. CTTCCAGTTTTTTCCCTGCCTTTTGGGCGGCG 22612 29 100.0 32 ............................. TACCTGACGCTGATCCAGTCGATCGCGCTGCT 22551 29 100.0 32 ............................. ATTTTCTTTGCGCCCGTACTCAACGTGGGAGG 22490 29 96.6 32 ............................A TCGCCCCGAGGTCGTTCACGACGTCCTCGTGC 22429 29 100.0 32 ............................. CGTTACTCCAGACAATAGAGCGCCTCACCACT 22368 29 100.0 32 ............................. CATAGGGGCCGCAGAAGTTGCCACAACCACAA 22307 29 100.0 32 ............................. GGGTCAATGTTGATGCCGGGGTGTGTTGTTAC 22246 29 100.0 32 ............................. GGAACTCATGCTTTTACCTGATGCGGCGGCAC 22185 29 96.6 32 ..........T.................. CGAGGCGGCATCAAAGACGACGAAACACCATG 22124 29 100.0 32 ............................. GATTTTCCCGCGTTGGTTGTATGCCGTGCGTG 22063 29 100.0 32 ............................. CGCGTATTAAACGGGCAGATCGAGGAAACAAC 22002 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 21941 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGTGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //