Array 1 3538-627 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDOY01000088.1 Vibrio anguillarum strain 100719-1/3A contig_88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3537 28 100.0 32 ............................ TCACTGAAGAGCACGCCGAAAAACTATTAAAA 3477 28 100.0 33 ............................ GTCAGGCGTCAATAGGTAGCGTTTGGTTTCTTT 3416 28 100.0 32 ............................ ATTGAAGCAGTAGCTATAACAAATAAACTTTT 3356 28 100.0 32 ............................ TTTTGGTTACTTCATCAAGCCCAATAATTGAG 3296 28 100.0 32 ............................ GTTTTAACGTAAAGAAGCAATGAGCTAACGAT 3236 28 100.0 32 ............................ TCACGGTGGTTTCCCTGCGGTTCGCTTAATAA 3176 28 100.0 32 ............................ GTCAACCCCGTTTCAGGGTCAATGCCAATCAT 3116 28 100.0 32 ............................ GTCAGGTCGGGTGGTTGGGGCTGGTATTGCTG 3056 28 100.0 32 ............................ ACTATTAGTTTTGAAGTGTTCGAGATGGGCGA 2996 28 100.0 32 ............................ TGCTTCGAAGTTCGCTTCTGACAGCGCGGCTT 2936 28 100.0 32 ............................ GCTAGCGGCTGCGCTTCTAATCGCGCTTGTGG 2876 28 100.0 32 ............................ TCACAGTGAGGGCACCATTTCTGCAAGCCTAG 2816 28 100.0 32 ............................ CGTTTAACCACTGTTTAAAAGGAGTTCACTGT 2756 28 100.0 32 ............................ AAAGCGCGGCAGTATGGTAACTCCATGAGCGA 2696 28 100.0 32 ............................ CAAGAGATTCGCGATCAGCTTCATGAGTGGAT 2636 28 100.0 32 ............................ GCTGAGTGAGATTCTATCGCCATTATTAAGAT 2576 28 100.0 32 ............................ ATAAACGAAAGGCGAATGCTGTCGGTGTTCTC 2516 28 100.0 32 ............................ AAATTGATTCCCTACCTCAAAGTCTTGATTGA 2456 28 100.0 32 ............................ ACCTTGCGCCAGTATCGCTTCCTTCATTAAAC 2396 28 100.0 32 ............................ AAAACGGAAAGCGGCCTGCCGAAGCAGCCCCA 2336 28 100.0 33 ............................ CTCATGCACAAGAGTGATTCTAGCGGCGGCTTT 2275 28 100.0 32 ............................ TCTGGCTCATCCACACACTCATGCTCAGGGTT 2215 28 100.0 32 ............................ ATAAATACAAAAACACCCCGCAGCGCGAGGTG 2155 28 100.0 32 ............................ ACTGCATCGCGTTGCCTGCTGTGTATTGTGAG 2095 28 100.0 32 ............................ AATTGAAACGCACACGGTAGCACTTAACCGCG 2035 28 100.0 32 ............................ GCTAACATGGCCAACTAGCGCCCAAGCCATTC 1975 28 100.0 32 ............................ CAGACGGGGGCGATAAAGTTACAGAACTTAAT 1915 28 100.0 32 ............................ GCACCACGACATTCGCGGCCAAGGGATTAGAC 1855 28 100.0 32 ............................ GCTTGGGAAACCCATAGGAAGACAAAGCCATA 1795 28 100.0 32 ............................ AATAAGCGACTACTTGATCATATGTCCTCAGA 1735 28 100.0 32 ............................ ACTAGTCAAGGATACCCTAGAGCAAGCGGCAA 1675 28 100.0 32 ............................ TCAATAGTACCGGACAAGCTTATTGCAATTTC 1615 28 100.0 32 ............................ GATATTGCAGGGCTTGAATATAAGCACTTTAT 1555 28 100.0 33 ............................ TAAAGCGTACTCCGCAAGGCGCTTGATTTCTTT 1494 28 100.0 32 ............................ AATCTGAAGCAGCTCGTGTGCTTGGGTTGAGC 1434 28 100.0 32 ............................ ATGTTGGCACTAGCTCCCCCATTTGCTCTTAA 1374 28 100.0 32 ............................ ACTAATTCATATCGATAGCCGTAAAGGTCGCC 1314 28 100.0 32 ............................ GCCGGGATTGAGTTAGCTTCCCGCTTGTCTCT 1254 28 100.0 32 ............................ AGTCATGAACGTTGACTCTTTGCTAAATCAAT 1194 28 100.0 32 ............................ ACACCAGAACCGACAAGCGATAGCGCGATCAA 1134 28 100.0 32 ............................ GTTCTGAAATGGCAACACCATGCTTGCTCATC 1074 28 100.0 32 ............................ TTCCCAATACCTATCTTGCTCGTTCCAGAGCA 1014 28 100.0 32 ............................ TGAGCGACGTGCCGTATCTGTCATTACTGACT 954 28 100.0 32 ............................ TTCGAAGGCTTCATGAACAGCTATCCATTCAG 894 28 100.0 32 ............................ TATCACCTCGAACGCTTCACCGTCTGGATTCA 834 28 100.0 32 ............................ GAGGCGCGGCGGCGTAGGAGTCTTTAAAGCTT 774 28 100.0 32 ............................ GTGGTGAAGATGTCGCAACAGGCCAAGCCACT 714 28 100.0 32 ............................ TTTCGGGCAAGCGATAATAATGTCGCTAACGC 654 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 49 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGATGTAACTTACGTAAGTTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGTCCTATGGGCAGCAAAATCCGGCAAACCGCTGGAGGAATGCTTGGCGGCTTTGCAACAAAGCAAGCCGACAGCATTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGGAGCAGCAAAGTATATCGCAAGATGGGAGCTTCGATTGCTATGGTTTGAGCAGCAAAACGCATGGGCAGTCAGTATTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTAAATACAAATAGTTGCAATAGGTGGGTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCCTGTTGCAGCTTATTTTTATTGGTTTATTCTATT # Right flank : GCTAGTGATCAAATATGAGACTGATGGAGCTAGCGAAACACGCCAATCTGACCTAAGAAATAGGTATCTCTGCCTACTTTTTTGAGTTTGGAGTATGACAGAGAAAGAGAAGTACATTCACAAATAGTTAATTCATAAATAGTTAATATTTTTATAATTCTGATACCTATACAAATTAGGCTGTCAGCGATGTTGGCAGCCTAATTCACGATGAATGTTATTGACTAGCTAGTTGCACAAATGGAAAAGTTTCCTTTCGATGCCTCCTCGATATAGTTACTCCACCAGCGCATCATTTCTCGACGCTGGTTAAGATACAACGCCCGATTGTAAATACCTCGAACTTGATTTCTATCTACGTGAGCGAGAGCAAGCTCAATAACGTCATTATGGAAGAGTTTGGTTTCATTTAGCGTTGTACTAGCTAGAGCACGTAAACCATGAGACACCAAACGATCTTTAAAGCCCATACGTTTAAGGGCAATGTTAGCCGTTTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 452-245 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDOY01000256.1 Vibrio anguillarum strain 100719-1/3A contig_256, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 451 28 100.0 32 ............................ GTGCTCAGTTCTAAAACCGCTTGCGACTATTT 391 28 100.0 32 ............................ TACGGACAACGTAAAGCTTGACCGGAGTGGAA 331 28 100.0 31 ............................ CAAAAAGGGCAAGTTCTCATCTCTTAAAAAA 272 28 89.3 0 ..G.....C.......G........... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTCACCTGTCGCATAGACAGCCAAGAAT # Left flank : TCTTTGATGGTGAAAGAAGGTTTATTCGAACTATCGAGTATCTGTGAGGTACCGGAGAACTTGGGGGAAGTAAGGTTTGTTCGCAACCAAACGATTAACAAGAGCTTTTTAGGCTCGAAGAAACGGCGAATTAAACGTAGCATGGTGAGAGCCGAGCTTTCTGGGGCTGAACAACGATTACCAGTAACGAACGAAGACCGTGTTATCGATAGTTTTCATCGAATACCAATCTCCAGCGGTTCATCTGGGGAAGATTATATGTTGTTTGTACAAAAGGAATTTGTCGGTGAGCGTGGTGGAGCAAACTTCAATAGCTATGGTTTAGCCACCAATCAAGAAAGAAGAGGAACGGTGCCTGACTTACGCTGTTAACCCTTTTTTGAAAACTCTTGTTCAGATAAATAGAAACAATGACTTACAATATTTAAATTTTATAGGGTATTTTCCCGATTTGTGACTTTAAGCACGCAGAATCAGAGACTTGATAACTATGCTTTATA # Right flank : TAGGTCAGGAAGAAAGCAACCTACCTGTTGAACAAGCAGTTAATAATCAAAACCATCAAGTTTTCTCTTGGTGGTTTTTTGTTTAAAAGGCTCCCCATGTATTTAAAAAGACTTGAAGCTATTGATGTTAATTTCAATCACTATGAGGTAGGACTTGAACGATATGTTAGGTGTACTTGGGGCCTGAACATGTATAGGCATCATGTGTTTCGTGCAAACCTGCCGTCGGATAGGTGACACCTGTT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCTGTCGCATAGACAGCCAAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //