Array 1 17732-23159 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSIR01000052.1 Vibrio cholerae strain N2827 NODE_289, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17732 28 100.0 32 ............................ AACCCCTCGTCATTGAGGGCTTTTATCTCTAT 17792 28 100.0 32 ............................ TGCCCACCACGCCGCCATCGGCATAACCTTTT 17852 28 100.0 32 ............................ ACGCCACCAGCGCGATTTATGTCATCTTGTGA 17912 28 100.0 32 ............................ ACAATGTCGTCGCCACGAGTATCAATTTCAAC 17972 28 100.0 32 ............................ TCCTGTCGGTGCTTGGGAAGTCATGCGTGAAG 18032 28 100.0 32 ............................ CGTCAAGTCACCAAACATACCGATTGAGTAAA 18092 28 100.0 32 ............................ TAAAAAGCTCAACGAAGGCGACGAGCTAAAAT 18152 28 100.0 32 ............................ ATACCGGCTTCAAGACCAAGGTTAGCTATTTC 18212 28 100.0 32 ............................ ATCTGAGGGTAAAGAGTACGGTTACGTCTTTG 18272 28 100.0 32 ............................ GCGCAAATGCGTTGCACCGTAAATTGACGCTG 18332 28 100.0 32 ............................ TGTTCGACTTGCTGAGTCGGTTGAGCGACAAT 18392 28 100.0 32 ............................ GTGAATGTGCTTGAGTTGGTTTTTAACCTTGA 18452 28 100.0 32 ............................ TTACCCAAGCTGTCAATGACAAGCCCGTAGGC 18512 28 100.0 32 ............................ TAGCCCGAATCCAGACCCAACGCCCGGTGACA 18572 28 100.0 32 ............................ ACCCTCGGCTCTAGCTTTGTTGGGCATCATGC 18632 28 100.0 32 ............................ ATCGCAAGGGATTGCTTTTGATGAAACAAGAT 18692 28 100.0 32 ............................ ATGAATAAGCACTATGAGAATAATTAACAAGA 18752 28 100.0 32 ............................ CACAGCCACAACAACAAGAACAGGCCGAACCC 18812 28 100.0 32 ............................ AGCGTCAACAAAATCCGGAGCCGGACACGCTT 18872 28 100.0 32 ............................ GGTAAGCTCGCTTTGCATCTTGGCAAGTATCT 18932 28 100.0 32 ............................ TGAAAATGCGTAGCTGTGGAGCCATCAATATA 18992 28 100.0 32 ............................ GCAATCCCGCCGCATGATGCGCTGTGGTGAAA 19052 28 100.0 32 ............................ GTAAATTCTTCGCGCTTTTAAATCTTGCTTTC 19112 28 100.0 32 ............................ GCTGTCGAAAATGCGGAGAGTGTGTTGATGAA 19172 28 100.0 32 ............................ TGTTGGAGCAAAAGTTAAATACTTTCCAATTC 19232 28 100.0 32 ............................ TGTCAGAGTACAAGGCAAAGGCGCTTGATCTT 19292 28 100.0 32 ............................ TTAGCAAATATGATTTCTGCAACACCTTTCAT 19352 28 100.0 32 ............................ ACACAAGAGCCACGGCGTACACATTGATTATC 19412 28 100.0 32 ............................ GCCTTGGGATACCTGACCTTACATCAGCCCCC 19472 28 100.0 32 ............................ TCACTATGGGCGTCATAGCTTAACACCAATGC 19532 28 100.0 32 ............................ TCACTATGGGCGTCATAGCTTAACACCAATGC 19592 28 100.0 32 ............................ TAGCCACGCATGCGCTACGCGCCTGCCCTTAT 19652 28 100.0 32 ............................ TTTGAACTAAGTTGACGGTATTCCCATTCTGT 19712 28 100.0 32 ............................ TACTGCGCAGATAAAGACGCAACCGGAACCTT 19772 28 100.0 32 ............................ GTCCAGCGAAGAGTAACCGATGCGGCAGATTC 19832 28 100.0 32 ............................ ATGTTGACAGTTAAATTACCAAGAGATTTTGC 19892 28 100.0 32 ............................ CAAAGGCAACCCAGACGAAGGCAAAGGCGGAA 19952 28 100.0 32 ............................ ATAATGAGCGTTACTGCGCCGTCGATTTTGTT 20012 28 100.0 32 ............................ ATCTGTTTGGCTATGTCATCCCTGATCGCTTG 20072 28 100.0 32 ............................ GAAACCGTTCACAGTGGTTAATTGTGGGCGAC 20132 28 100.0 32 ............................ ACATAAAGACCGATGGGTGAAAGGGGCGGCTT 20192 28 100.0 32 ............................ TGAAGAGAAAGAGAAGGAAGAAGAAAAGTACC 20252 28 100.0 32 ............................ AAGCAAACAGACCTGCAAAAAGAACGTTAGAT 20312 28 100.0 32 ............................ GAAGTGGACACTGAGAATCATCATTAAGAAAC 20372 28 100.0 32 ............................ CTGCATAATGACTTTCGCACTTATCAAAGCCA 20432 28 100.0 32 ............................ TGGCGGAGGGTCGTTACGATGCGTGAGTCAGG 20492 28 100.0 32 ............................ TCATCGATATGATTGACGGTTAAACGGTCAAC 20552 28 100.0 32 ............................ TGTACTGTCGCGTTCGGTGCCCAGTGTTAGGT 20612 28 100.0 32 ............................ ATGACGCAGTGCTGAGCGACGCTATACGGCTC 20672 28 100.0 32 ............................ GAAAGTATTATTTTTGACCACACAGACGCTAG 20732 28 100.0 32 ............................ GTTTGGCGATGGGTGTGACAGCCCTTTAAATA 20792 28 100.0 32 ............................ ACGCCTGCCAGCCTAACACCGCCTGCAACCAC 20852 28 100.0 32 ............................ TAACAAAGCTGCCACCATCGGTGGAAACGTCA 20912 28 100.0 32 ............................ CATAATAAGCGGCTGGCAAAACGCCAACTCTC 20972 28 100.0 32 ............................ GCACTGATTAGACGCGAAGGAAAGAAACCAAA 21032 28 100.0 32 ............................ ATCACAAGCCGAGTTTTCATTGTGTTCTAAGG 21092 28 100.0 32 ............................ GTTCAAAAATGGTGATTTAGTTAATGAATCTG 21152 28 100.0 32 ............................ TTAATCGCGTCTTCCTTGCTTGAAAACGATCC 21212 28 100.0 32 ............................ GTGATGCGCTTCACAAAATTAAAAACCCGCAC 21272 28 100.0 32 ............................ TAGATGGACTCTAGACATCAGAAATACACCTA 21332 28 100.0 32 ............................ AAAAATCCATCATCCCAGTACATGCCTACAGA 21392 28 100.0 32 ............................ TACAGGATTATTTAATCAAATTTATCAACGAT 21452 28 100.0 32 ............................ TGCTGCTTTCGCTGCTGCTTCTCGATTACCGC 21512 28 100.0 32 ............................ CGACAAGGGTAAGCCAGACGAAAAAGGGCAAA 21572 28 100.0 32 ............................ TGAACATGGCCTCAACCGAAGCCGTAGTTTCT 21632 28 100.0 32 ............................ AACTGGTTCCTTGCTATTCCTTTCCAACTAAG 21692 28 100.0 32 ............................ CCTTGGTGGTCGCCCAACCAGTTAAGGCGGTT 21752 28 100.0 32 ............................ GCTTGGGGTTGTTATGATCGCATCCGGTCGAT 21812 28 100.0 32 ............................ CACAAGGCGTGTTTAACCGTGCGGTTAAATCG 21872 28 100.0 32 ............................ GGTAGTTACGACATCAGGGATATTATCACACG 21932 28 100.0 32 ............................ AAGTGCAGCAAACCTTCGACCAACTGGCCGCA 21992 28 100.0 32 ............................ ATTAATCGGCCCATTCTCCTGCTTAATTACAG 22052 28 100.0 32 ............................ AATGGGAGAACAGAGTAAGAGGCGACCACATA 22112 28 100.0 32 ............................ TTGGGCGCTAGACCTTAACTCTTCCCCTTGGT 22172 28 100.0 32 ............................ GAAAGCGCCAGTAATTTGCCTGCTGTGTTTCG 22232 28 100.0 32 ............................ GGTAACGATTGAAGTTCCAGGAGACAGCTCGC 22292 28 100.0 32 ............................ AAATGGGCGGGCAGCGTTTGGCTTGTAGTCCT 22352 28 100.0 32 ............................ ATCAGAAACTGTTGTTCCTGCTGTGGCGACTA 22412 28 100.0 32 ............................ TTGGTCTAACTTTTCGATTTGCGGACACTCAG 22472 28 100.0 32 ............................ GTCGAATGATTAATCCCGGCTGTTTTACTCCG 22532 28 100.0 32 ............................ ATACATACTTATCATTGTCGTTGCGAAAAGAG 22592 28 100.0 32 ............................ TTCAGCTTATTGTAGATGCGCAGCAGCCTGCG 22652 28 100.0 32 ............................ TCATATTCATCAAAATGCGCTATTGTGCAGCG 22712 28 100.0 32 ............................ TTGATTCCCTCGTATTCACTTTCGGTTATACC 22772 28 100.0 32 ............................ GTATTGAAAGCGGAATGGCTACTCTGACAGCT 22832 28 96.4 32 ...........T................ TGGCATAAGGTGAGGTAATTTTCCAAGTGATT 22892 28 96.4 32 ...........T................ TGAACGGATACGCTCGTTGTTTCAGTATTTAC 22952 28 96.4 32 ...........T................ TTCCCAGCCCACAGCGAGCTCGCAAATCATTG 23012 28 96.4 32 ...........T................ AAGGGTTTAGACTTGGTATCAGTGTATAAATC 23072 28 96.4 32 ...........T................ AGCTTAAACAGTACGTTTTTGCCTTTGACGTT 23132 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 91 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTCAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAGTGTTTAGTGGATTTGCAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTATGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCTAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAACGTAATGAACTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //