Array 1 450773-447337 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMHU01000001.1 Micromonospora inyonensis strain DSM 46123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 450772 28 100.0 33 ............................ TGCCGGTCGGCGCGTGCGGGTTGACCGGGCGAC 450711 28 100.0 33 ............................ CCGGTCCCCGGCGATGAGCGCGCTCGACCAACT 450650 28 100.0 33 ............................ AAAGCGCCTCGCGTCGGACGCTCGGCTGCCGCG 450589 28 100.0 33 ............................ CTGACCCCGGGAGGGACACCATGACCACCACCG 450528 28 100.0 33 ............................ CGACTTCCCGCCGGCCCTTGTTCTTGACCTTCC 450467 28 100.0 33 ............................ GCCAGCCGGCGGCGGGCACGAGATGCAGGGACT 450406 28 100.0 33 ............................ GTTGACCTAAGTCCGACCGGCTACGGTGTCGGC 450345 28 100.0 33 ............................ GGAGCAAGGCATGAGCAAGGAACAGCGCGACCA 450284 28 100.0 33 ............................ GCTGACGGCGACCGTGACGTCGGTGTCGGATAT 450223 28 100.0 33 ............................ GGAGACGCAGTGAGCACCCGCCGGACGCCGTAC 450162 28 100.0 33 ............................ GGTTTCCGATATGGACAATCGCGGAAACCGTTG 450101 28 100.0 33 ............................ CTTGCCCAGCATGCCTACGATTCGGTTTACAGC 450040 28 100.0 33 ............................ CCTGCCCTCGTCGACGTCGAGACCGACCTTGAC 449979 28 100.0 33 ............................ CGCGACCCAGACCCGCCACCCCTGGCGGGCGAC 449918 28 100.0 33 ............................ CGGCTGCACCCGCTGATCCGGCACGCTCGCCGG 449857 28 100.0 33 ............................ GTTCTCCAGGTTCGGTCCGGCCTTCGAGAACCG 449796 28 100.0 33 ............................ CAGCTTCACCGGGCCACCTCCCGCTCGGCCGGG 449735 28 100.0 33 ............................ GGCGGATCATCAGGCGGACTGGCGGGAGCGCAC 449674 28 100.0 33 ............................ GGGCAGTGACCGGTGATGCGCCGCCTCGACCAG 449613 28 100.0 33 ............................ CAGGACGTTGAGCTGGTACGTGGTGGTGCGTGA 449552 28 100.0 33 ............................ GATCGCCATGTGCGCGACGAGCCGGAACGACGT 449491 28 100.0 33 ............................ CAGTCGTTCGGCAGGCCAGGCCGTTCGGACGAC 449430 28 100.0 34 ............................ CCCGCCGAGGTACGACATCAATGAGCCGAAGCAC 449368 28 100.0 33 ............................ CCACGCGCGACAGTCGTCGCGGATGGCGCGCGA 449307 28 100.0 33 ............................ CGGCCACGCGACGTCGCGGACCATCTGCTTGAG 449246 28 100.0 33 ............................ GGATCGTCGGTCGACTGTCTTGATAGGACAGAA 449185 28 96.4 33 .....................A...... GTCCGGCAACCCGATCCCGGTGCTCTGGTCGCA 449124 28 100.0 33 ............................ GCTCAAGCGCAGCACGCTTGAACGGCAGCGGTT 449063 28 100.0 33 ............................ GTGCCGACCCGGCCCGGTTCGATGAGGTGGAAT 449002 27 96.4 33 .....................-...... GAACTTGATGTCCTTCGGGTCTTTGATGCCCTT 448942 28 100.0 33 ............................ CCAGGACCAGGAGGACACGCTGCGGGAGGCCAT 448881 28 100.0 33 ............................ CTCGTCCAGCACCACGGCTCGGAAGCTGTTAGG 448820 28 100.0 33 ............................ CGCCCGCTCCATCTGCGACTTTGACGGGATGCC 448759 28 100.0 33 ............................ CAGCTCAAGGCGCAGACCGCATTGGTCCGGCAG 448698 28 100.0 33 ............................ GCTCAGCCATGGTGTCCTCGTAGGTGCGGTCGT 448637 28 96.4 34 ...........A................ TCGCCTACGGGGATGACCTTCTCCAGGGTGAGCA 448575 28 100.0 33 ............................ CGGCCCGTTCACTCCGAGCGGATCGATGCGCAA 448514 28 100.0 33 ............................ CCACCACCGGCCCGGACTTCCACGGCCGCGTAC 448453 28 100.0 33 ............................ CGTGCGGTAAATCGCTTGCCAAGAAGAGTTTTC 448392 28 100.0 32 ............................ TCGCACACACCGCCGCGAACGGCCCGTGGACC 448332 28 96.4 33 .....T...................... GCGAGCGCATCGGTCAGGGCGCGGACGGCCTGC 448271 28 100.0 33 ............................ CGAGGGCGCCGACGTCGATCGCTCGGTTTGCTC 448210 28 100.0 33 ............................ CCACGTCGTTTTCGTGGCGATCAAGACGATGAT 448149 28 100.0 33 ............................ TGTCCGGATTCATGTTGTGCGTTCCGTGACTCT 448088 28 100.0 32 ............................ CGTCCACCAGGACGGCGCGTGCCCGCAGCAGG 448028 28 100.0 32 ............................ GCCGTCGACCAGGCCGGACAGGACTTCTACGA T [448026] 447967 28 100.0 33 ............................ CACCTCCGTCGTCGGCGCCACGGTCAAGAGGAT T [447965] 447905 28 89.3 32 .T................C......G.. TCACAGAACAACCCTGTTGACTGACGCTCCCA 447845 28 100.0 32 ............................ CCGGCCCGTCACGCTCACCGTCGACCTGGCCA T [447843] 447784 28 100.0 33 ............................ CAACGAGCTGCTTGAGTGGGTCAAGCAGATGCG T [447782] 447722 28 92.9 32 .T....................C..... ACAGACTCATGCCCGGCGGGCACGTCGACCAA 447662 28 85.7 33 .T.T.T......T............... GTAAGGCTGTGCGACGGCGCAAGCGCTCCGTGT 447601 28 82.1 33 .T.....T..........A..A...G.. TGCGGGGATCGCGGCCCGGGTGGTCGAGATCCA 447540 26 82.1 26 .T......T.......--.........G GCACCGGGACACCCACGAGGCGACCG Deletion [447489] 447488 28 78.6 33 G...........TC.C.....A..G... CCGGATCGACGTTGACGCGCCGTCTCGCATCGA 447427 27 78.6 35 .T.T..........-......AC...T. GAGGTGCCCGCGTCCATGTGGCCTGGCTACTGGGA 447365 27 78.6 0 .T.T..T..........C.....T-... | G,G [447339,447350] ========== ====== ====== ====== ============================ =================================== ================== 57 28 97.4 33 CCGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TCCGGCTCTGGGACGCAGACGGGCCGGAACTCGTCGGCGGGCGCAACTACGGCAGCGAGCTGGACTTCTGATGACCGTCATCATCCTCACCGCCTGCCCCGAGGGGCTTCGAGGGCATCTGACGCAGTGGTTGTTGGAGATCTCCGCAGGCGTGTACGTAGGACACGTCAACAGCCGGATCCGGCAGCGGCTCTGGGGCAAGGTGATCGAGATGGCCGGGCCGGGCCGGGCCCTGCTCGTCTACCAGGCACCCGGCGAGCAGCGGCTCTCCTTCAGCGTGCACGACCACCACTGGAAGCCGGTGGACCTCGACGGTGTCACACTGATCCGCCGCCCCACCGAACGGAAGATGTTCAACCCCGCCCTGCCGAGAGGCTGGAGCAAGGCGTCGAAACGCCGTCGGTTCGGCCGGAGGTCACCGGACTCCGCCGTCCCAGCGGCTCCGAATCAAAGTGAACAAAAAACCGAAAGTTGATCTCCAGAGCCGCAGGTCAGGAAGC # Right flank : CGTTTGGCCGGGCCCCGCAACCGCCCGCGCCGAGCCATTAGCAACTACAGCTCCTCGGGTGGCTGCTCCCTTGTCCTTGGCCCCGGACAGGGGCAGTCAGGGACGGATCAGCTCGGTTTGGTCGCCGGGGAGGACGTAAACTTCGCCCTTCGGGCCTCGGATTTCGATCACGGGTACGCCCTCGTCCAGATCCATCTCGCGCCGCTCCCGGCTGGAGGGCATGCGAGCGATCGCCGAGCTGCCGGGCGTCAGCTCGATGTGTTCGCGCTGAAGCGCTTCTCGTACCCAGGTGCCGCGACCTCGGCTCGTCCTGATCAACCCCTCGGAACGCAGGAGTGCTACCGCCATGCGGACGCTCTCCCTGCCGATCTGGTGTTCCTGGCTGAGTTGCAGTTCGCTCGGAAGCGTGGAGCCTGGAGCGAACTCCCCAGATTCGATCTTCTCCCGAAGCAGGTCTGCGAGCTGGATGTAGATCGGCGTGTGCGAGCGGGGATCGATCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [35-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 467060-468917 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMHU01000001.1 Micromonospora inyonensis strain DSM 46123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 467060 28 100.0 33 ............................ GCAGGTTCCAGCCGAGCCCCGCCTTACCGGCCC 467121 28 100.0 33 ............................ TCGGGTTGCCAGGGTGCCGGCGCCGGGTGTCCA 467182 28 100.0 33 ............................ CTACGTGTCCCCCGCGCCCGGAACCAGCCTCGC 467243 28 100.0 33 ............................ CGGCTGCTGGTGTGGCTGGACCGGACCCGTGAC 467304 28 100.0 33 ............................ GATGCGCGCCTTCATCAAGGCGTGGTGGGACGC 467365 28 100.0 33 ............................ CGCGACGACGCATCCCGCAGAACCTGCGAAAGC 467426 28 100.0 33 ............................ GTGGCCGAATACCAACTGAGGGGCCTGGTCCAC 467487 28 100.0 33 ............................ GCCGAGACGTCGCTGACGGTCCACAGGCGTTCG 467548 28 100.0 33 ............................ TTCGAGGGCGACCTTGCCGTCCGGGCCGGCGAT 467609 28 100.0 33 ............................ CACCACCGGCGCCAACTCGCGGACCACCGGGGC 467670 28 100.0 33 ............................ ACGACCCAAGGCCGTCAGTTCCCCCGGCGGTTC 467731 28 100.0 33 ............................ CCACGGCAGCCCAGCCGCGTCCGTCACGCATGA 467792 28 100.0 33 ............................ GACGTCGAAGACGACCTCATCGGTCCGCACCGG 467853 28 100.0 33 ............................ GAATGGCCGCGCGTTCGCGGCGAGCTGGCCGAT 467914 28 100.0 33 ............................ CTGGTCCGACATGATCGTGGCGACCGGGCAGAC 467975 28 100.0 33 ............................ GTCGGTGCTGGGGTTCCAACTGCTCCAGGCGGT 468036 28 100.0 33 ............................ CCGGCGCGGCTACCTGCGGACCACGGACGGAAT 468097 28 100.0 33 ............................ CGGCAATACCCGGCAGCGGACCCTCGCGGCGGT 468158 28 100.0 33 ............................ CCGAGCAGGTACCCGCCATGCGGGTTGTCGAGG 468219 28 100.0 33 ............................ GGTCTGCGCGGCGTCCATGACTCCCACGATCCC 468280 28 100.0 33 ............................ CTTGCCGACCGCGACACCCTCCATGATGTCGGC 468341 28 100.0 33 ............................ GTTGGTGAGGGCGGCGGGCGTTGACGGGTCAGT 468402 28 100.0 33 ............................ GCGCACCAAGCGCGCCTACAGCGAGATGCTCAG 468463 28 100.0 33 ............................ CTGCTGACCGGCGGCATGCTCCCGGCGGTGGGC 468524 28 100.0 33 ............................ GGCCAAGCGTGAGGCGGACCGGATCACCTTCGC 468585 28 100.0 33 ............................ GTAGGTGGTGGACTTGCTGATGTGGCGTGGCAC 468646 28 100.0 33 ............................ CGGCTCGGACCGCTGGACGATCAACGCGATGAC 468707 28 100.0 33 ............................ TGCTCCCCTCCGGTGGCTGGCCGACCTGCGCCC 468768 28 100.0 33 ............................ CTTGTAGCCCCCGAATTTGTCGATCACCGCCAG 468829 28 100.0 33 ............................ TGAAAGGACTCCTGACGTGCAGAGAAAGGAACT 468890 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 100.0 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : CACCATCAGTACCCGCCGCCCGAGCCCGGTGAGTTCAGCCTGCGGAAGGATCCGTCTCGACGATTCCGGCAAACGCCTCGGATGCCTTCTTCCAGCCGTGGACCTGATGGGCCCGGCTTGTTGACCTCGTCATCCACCATCCCCAGACGCCGCAGGTCCAAGATGGTCGCCTCCCTCGGGAAGCGCCCGAGCCGGACGTCCCGACCGGCTCGATCGACGCGCAGGGTCAGACTCAGCCCCCGTTGCTGCCTCGCCTCGCCCCGAACGGGTGCAGGCAGGCGAACCCCGCCGCAGCTACGACGATGACACCGCTGGCGAGCGCGCCCGGCCTATCAGCGGTACAGGAACCGGGATACGCGGCGGCCCACCCTCAACCTGACAACTAACATCGGGTGCGCTGTGTTCGACGTGAGCCCGTCACCTTGCCCCGGTGGAGCGTCATGCCAACCAAAGTGAAGAAAATTGGCCTAGTTGATCTTTAGCGCACCAGGTCAGGACGC # Right flank : CCACGAAGTCGGACCTTAGAGGTCGCGCGGAATGGTTGTTGATCATCGGCGGCGGGCGGGTCGGTTGTTCCACCGGTAGAGGGTCCATGCACGCCGGATGAGGCTGCGGACGGTGATGATCGCGTCGGCGAGGTCGAAGAAGGCGTCGATGACCTTCTCTGTTCGTTCGTAGCAGCGTTGCAGCCGGTTGAACGCGTTGTGCCAGCTGTTCGTCCGTTCGACGTGCCACCGTTGGCTCGCCTGGATGGGCGCCTTGTCGCCCTTGTGGGCGATCTCACCGGTCAGGCCGCGCTCGGCCAGCAGGGCGCGGGTGACCTGGGAGTCGTATCCGGCGTCGAGGTGCACCGTGATGGCCTGGGGTAGTGGGCCGAGGTCGTCGAGGTGGTCGAGGGTGGGGCCGAGCAGGGGTGAGTCGTGTCGGTTCGCGGCGGCCAGGACCCGGCCGAGGGGGATGCCGTAGCCGTCGACCATCAACGAGCGTTTCATGCCCTGCTTGCCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 469923-471412 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMHU01000001.1 Micromonospora inyonensis strain DSM 46123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 469923 28 96.4 33 .....T...................... CCCTCCAGCGACGGCCGTGGGCCATCACGTCCC 469984 28 100.0 33 ............................ GACGATCCGGCGTTGGAAGAACGGCGAGGTGTC 470045 28 100.0 33 ............................ TCGTCTCGATCGTCCGTCGATTGCTTTCCGAGC 470106 28 100.0 33 ............................ TTCGGGTCCGCGCTCGCCGACGACGGCGAGGCC 470167 28 100.0 33 ............................ CATCCACAAGCAGCTGCCCGACATCGTGGGCGA 470228 28 100.0 33 ............................ TGGTGGGCGTGGTGGCGCAGCCCCGCAGGCCCT 470289 28 96.4 33 .....................T...... GCGACACGCCGAGCTACAGGCCGAGGCCGAGGC 470350 28 100.0 33 ............................ CGTTCCAGGCATAACGTCACGTGACAGAACCGC 470411 28 96.4 33 .....T...................... CAGGTCGACGTCGGCATGGTCGGCCACGTGCTC 470472 28 96.4 33 ....................A....... CGTGAAGGGGGTGATGTCGGTCAGCGTCCCCTT 470533 28 100.0 33 ............................ CCTGGCGCAGACGTCCATCCTCGCGGCGACCGC 470594 28 100.0 33 ............................ CTCACTCACCGGGGCCGCAGTCTTCGCGGTCGC 470655 28 100.0 33 ............................ CAACGACATGCCGACGCTGGCGGCCAGCTCGAA 470716 28 100.0 33 ............................ CGAGGTCACCTTCACCCGACCTGACGGGTCAAC 470777 27 96.4 33 ...............-............ GGAGAGCAGCGTGAAGGTCAGGGTGCAGTGCCC 470837 28 100.0 33 ............................ GTAGCGCCACGCCATGATCACATGGCCCAGCCG 470898 28 92.9 33 ....................AT...... GGATCTGTGTGGGGAGCAGCAGGTCCGCCGGTA 470959 27 96.4 33 .....................-...... CGACGACATTGACGCCCTGGTCGACTTTGTCAC 471019 28 96.4 33 .....................A...... GGCGACGATCCGGGCCACCCTGCGCTATCTCGC 471080 28 96.4 34 ...................A........ AGATGGCGTCGGCCACGTCGTCGACGTCCCGGAG 471142 28 100.0 33 ............................ GGTTGCCGAGTATCAGGGGCGCGGCCTGGTCCA 471203 27 96.4 33 .....................-...... CCAAAGATCCACGGCTCTCGTACCTGCTCTCTC 471263 28 100.0 33 ............................ CTCGCCGAGGCGCTGCAACCTCACGCGTTCCGC 471324 28 100.0 33 ............................ CGGTCCGGTCGTCGCCGGGCAGGGGGCGGGGGG 471385 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 25 28 98.4 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : CCGGTGAGCGTCCGGCGGCCTCGCCGCCGCCGGGAGCCTTGGTGATGCAGCCGTCCACGGCGATGTCGTCGAGGACCAGGCCGACGAGCCGGTCGTAGGCGTCCAGGGCGATCTGTTTGAGCTGGGCGAACACCCCAAGCTCTATCCACTCGTCACGGCGGCCGCGGATCGTGGTGGCCGAACAGGTGGCATCGGCGATCGCCTCGTAGGCGCAGCCGAACCGCAACACCTGGACCAGCTTGTCGAACACGATGCGGTCATCGATCCGCTTGCGGTGACAGCCCAGCGGATGTGTCGGTTGGTAGGTCGGCCGATCGGGGAGCAGCGCGGCGAACTGGACCCACAACGGCTCGATCAGCCATGCTGGGATGGCAGGCACAGAACCTCCCGTGATCACGGAGCGTCAGCAACTTCATGATCACCAGTTCTGTGCCTGCATCCGTTCAGGCGCGCCGATCAACCCACCATTCCGCGCGACCTCTTATGCGGGTCCTGGGGTC # Right flank : CTTTGCGTCGTAGTGTCTTGCATCGTCCTGTCCCTGTTCCCACGTACGACCCGACCGAGTAGTGCCCTGCGTCAGCGGCAGATCGACGGCGGCGCGGGGGCAGCTGACGGCGGGGTATCAGGACGCCGTTTCAGCAGTTCGGGGCGCGCCAGAACTGGCTGGACTTGTTGCCGACGTGGACGTGGTCGTCGTGGTCGGGGTAACCCGGCCCCAGAATCTCCTTGAAACCGCAGTACCGGGCCATCCGCCACATCTCGCAGAGACTCGGCCCGCTCGACGTGCCCAGGTCGGCGGCCTTGCCGTACGTGTGCAGGCTGCCGGACGCCCCGCCGACCTTGCTGTTGCAGGAGATACTCCGGAATCCGGAGGAGATGACGATCGGCCGGTCACCGAGCTTGTGCCGCAATGCCTCCAGTTGCCACATGACCCGCAACAGGTTCTCCCGTACGGTGGCGGCGTCGACCGCACCACCGGAAAAGCCGGCTTGGCCACAACCACCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1523369-1516499 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMHU01000002.1 Micromonospora inyonensis strain DSM 46123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 1523368 29 96.6 32 ............................T CGTGGGACCAGGTCGGCCCGCACGCGGTCGGG 1523307 29 96.6 32 ............................T ACGCCGCCGGTGGTCGCGCCGGTGGTGGTCGC 1523246 29 100.0 32 ............................. GACCGGGCCTGACGGAGTTCCTTCGCCTTGGG 1523185 29 96.6 32 ............................G GCTAGAGCATAGACCCCGTGGGAGGAAACAGA 1523124 29 96.6 32 ............................G AGGCCTGGTGGACGGTGCCCGCCAACTACCAG 1523063 29 96.6 32 ............................G CACCGCGCCAACGGTCTGACCGATGACGGATC 1523002 29 96.6 32 ............................G ATGACCCATCCCCCTGTTCGGGGAACGTGTTC 1522941 29 96.6 32 ............................T TCGAGGCCTCCCGCGTGCACCCGGACGCCGCC 1522880 29 100.0 32 ............................. CTCATCCGCCTACTCGGCTGGCTCCACCCCAC 1522819 29 100.0 32 ............................. GGATGACTGCGACGGTATGCCGGCCCCGGCCC 1522758 29 96.6 32 ............................G GAGACCGAGCGGCGCCGCGCCCTGGAGGAGCA 1522697 29 96.6 32 ............................G CTCACCGGCCCGGCCGGGTTCGTCTTCCCGGC 1522636 29 96.6 32 ............................A GGCCAGCACCCGAGGGATCAGCCCGTCCGAGG 1522575 29 100.0 32 ............................. TGATGGGCCTGCACCGACAGATCCGGGGCGTC 1522514 29 96.6 32 ............................G TGGGCCGAACAGAGCCGGGTCCGTGAGCACCG 1522453 29 100.0 32 ............................. GACCGCGCCAGGTACGCCGAGGCCGTCCGCGT 1522392 29 96.6 33 ............................A GACGGCGACCTGTACCGGTTCCTCGATGACGCC 1522330 29 96.6 32 ............................G CGATGCGCGCCTACTGGTGGGCCCACGACCGG 1522269 29 100.0 32 ............................. ACGAGGTACGGCAAGCTGACCGCCGCGCGGAC 1522208 29 96.6 32 ............................G CTCGGTCGGGTCGAGGATGGCGGGGTGTTCCT 1522147 29 100.0 33 ............................. ACGCTGCTCAACACCGCCGTCTGCGAGATGCCC 1522085 29 100.0 32 ............................. GTCGCCGTCTCCGGCGACTCGCTGCGGGACAT 1522024 29 96.6 32 ............................G GTTCGCGAGATGGTGCGGGAGTTGCAGCAGGC 1521963 29 96.6 32 ............................G GGGTATGGGCAGCGCGTTTCGTCTGCCCGTTC 1521902 29 100.0 32 ............................. GGCACCTTCCAGCCCGTCGAGCTGATCAGCGA 1521841 29 96.6 32 ............................G CCGGTTTCCTCCGTTCGGCCGACGCGCGCCAC 1521780 29 100.0 32 ............................. TCCGCCGACCAGGCCACGTAGTCCGCGACCGG 1521719 29 100.0 32 ............................. TCGCGGAGCGCGATACCGGCATCCTCGATCCC 1521658 29 96.6 32 ............................G CCAGTCACAGCGACCTTCACACCGGCCCTGAC 1521597 29 96.6 32 ............................G ACCTTCTCGCGCCGCGACATCCGGCTCACAGA 1521536 29 100.0 32 ............................. CACCTCGGCCAGATCATCACCCCCGCCGCCGG 1521475 29 96.6 32 ............................G GTGGTCGCCGGGGTCGCGGACGTGATGGACAA 1521414 29 100.0 32 ............................. GCCGTCACGATCTCCGGCGTGGCCGTGGCCCG 1521353 29 100.0 32 ............................. TGGACCGTCGAGCGCGTCGAGCGGGAGGGCTG 1521292 29 100.0 32 ............................. GACGCGCCCGCGTCCGGTGAGGCGTCGTACGC 1521231 29 100.0 32 ............................. CGGACGGTGAAGGCGGACACCGGCCCGGCCCG 1521170 29 100.0 32 ............................. CCGGATGGGCCGCGTTGGCGTGCCCCGTGTAG 1521109 29 100.0 32 ............................. AGGGGCGTCTCCACATCGCCGCGGATCCCGGA 1521048 29 96.6 32 ............................G TCGGCCGTGCAGGCTGTCATCGGTGCCCTGGC 1520987 29 100.0 32 ............................. GGCGTCGCTTGCACTCCGGGGCTTGAGGCTGA 1520926 29 96.6 32 ............................G TTATCCACAGGCATGACGTCGGCGGGTTGCCT 1520865 29 100.0 32 ............................. ACCCAGGACCCGCAGGGCGCGCTGCTGTGGCA 1520804 28 93.1 32 .....................-......G CTGACGACCGCTGCGACGGCCGCCGAGATGAC 1520744 29 100.0 32 ............................. GCCATCCACGACCGCATCCCCGCGCTCCTGCC 1520683 29 100.0 32 ............................. AGGCCGTCGAAGTACCGGCCGTCGGGCAGGTC 1520622 29 96.6 32 ............................A TCGGCCCGCTCGTTCGGGTGGAACAGCGGCGT 1520561 29 96.6 32 ............................G TGCTACATCTGCGGCAGGCCAGCCACCGTCCG 1520500 29 100.0 32 ............................. CGTCATGGATCGCTTCACGACCACCCCGACGG 1520439 29 96.6 32 ..................T.......... TGGTCGACGGTTCGGTAGACGGGAGCCGTGTG 1520378 29 96.6 32 ............................G GTTGGGGCGCAGATCGTCGGCGGTGTCGCGGC 1520317 29 96.6 32 ............................G TTCCCGGGCGCGTACGCCGTGCTGTGTCACCT 1520256 29 96.6 32 ............................G ATCGAGGCGGGGGCGGTCACCGCCGACAAGGT 1520195 29 100.0 32 ............................. CAGGGCAACGGGTCGACCATGGCCGCCCTAGC 1520134 29 96.6 32 ............................G GTTTCGGCGTAGCAGTTGTCGCAGCCGGGGGT 1520073 29 100.0 32 ............................. GCACACTGCGCGGCACCTCATGCCGCTGCCTC 1520012 29 100.0 32 ............................. CGTCCGGCCGCGCGGCGGCGTCTCGCAGCACC 1519951 29 96.6 32 ............................G ATCGAGAACGCGCGGTGGCATCTGTTCGCCCG 1519890 29 96.6 32 ............................A CCGTCACCGTTGTCCGCGACTACTCGATCGCC 1519829 29 100.0 32 ............................. CTGCGCGGGTGGCTCCGGCCCACCGACCGACC 1519768 29 100.0 32 ............................. CGGCTGGTAGCCGTCGCTGGGCAGGGGCATGG 1519707 29 96.6 32 ............................A CCGGGCTGGACCTTCTGGGCGACCCACGGATT 1519646 29 96.6 32 ............................T CGGAGACCGCAGCGGTGGCAGCGGGTGGCCAT 1519585 29 100.0 32 ............................. CCGGTCGGAGTTGAGACTTGACTCTTCGGGGG 1519524 29 96.6 32 ............................G TACGCCAAGGCAGTCGAGGGATTTGAAAGTGC 1519463 29 96.6 32 ............................G TTCGCCACTGGTGGATGGCTATTCCGGCGAGC 1519402 29 96.6 32 ............................G GACAAGGGGAAAGGGGAGAAGGAGGAGAAGTG 1519341 29 100.0 32 ............................. GAACACCACCGCGGCGAGGCGGCGGCCGCCCT 1519280 29 96.6 32 ............................G TCGTCGACGACGGTCTGGAGGTCGGTGGTGGT 1519219 29 100.0 32 ............................. CGTGGTCGCCTGCCTGGCGGCAGTCGCCCTCG 1519158 29 96.6 32 ............................G CCGGTCGGCCTCGCGGTCACCTCCACCAGCGG 1519097 29 100.0 32 ............................. TTCAACACCGAGAACTCCACGAGCGTCTGGGT 1519036 29 96.6 32 ............................T GGCCGCCGAGCAGCGGGTCAACGCGCTGGCCG 1518975 29 100.0 32 ............................. GACGTCACGGCGTCCCGACCCGACGGCGGGTC 1518914 29 89.7 31 .......................T.C..G CCGGCAGGCGGAGCCAGAGCGCCGTCAGCCT 1518853 29 96.6 32 ............................G GCCGGGTGGCGGCGACGCGTCCAGGTCGAGAC 1518792 29 100.0 32 ............................. GGCAGCCACACTCCCCCGGATAGCGCGAGTAC 1518731 29 96.6 32 ............................G GTTGCGCACCTCCCGGTACGGCACCAGCAGGT 1518670 29 100.0 32 ............................. CTTTCCGAGCGCCTGACAGGCGTGCCGGTTGG 1518609 29 96.6 32 ............................G TGCTTCACGGCCCGCCACTGGCGGCGGACCTC 1518548 29 96.6 32 ............................G GGCGAGTGTGGACGGGCGGGACACGGCGTGCA 1518487 29 100.0 32 ............................. TGGTCGCGCCCGGCGCCGACACCCTGATCAGT 1518426 29 100.0 32 ............................. AGGCCGCCGCCTACGTCGACGAGCTCAAGGCC 1518365 29 96.6 32 ............................T TCGGGCGCCTCTCGTTTCTTCGCGGATTTCGG 1518304 29 96.6 32 ............................G GTGTACGCCGCCGCCACCTACGGCGGCGGGAC 1518243 29 100.0 32 ............................. TGGCCGGCCTCTACCGGTATCTCGACTCCCGC 1518182 29 96.6 32 ............................G GAGATGCGCGCCCGGCCGTGGCAGTACGTCGG 1518121 29 96.6 32 ............................G CTCACCAAGGAGGCCGACGCCGCCACCGTCGG 1518060 29 100.0 32 ............................. TGCTCACCGCGTACGACGCCGCCGCCGCGCGC 1517999 29 96.6 32 ............................G CTCGGCGGCCTGGTCGCCGCCGGCCTGCTCGA 1517938 29 96.6 32 ............................G GCCCTCGGCCACGAGCTGCTGCACAGCTCGTC 1517877 29 96.6 32 ............................G CTTGGCTTTCAGGTCTTCCGGGTCTACATCGA 1517816 29 96.6 33 ............................T CTGAGCGCCGTATCGGCGTAGGGCACTTCGAGG 1517754 29 100.0 32 ............................. ATGGCTCGGCAGATCATCACCCGGCTTGTGGA 1517693 29 96.6 32 ............................G CCGGCCACCGCTCCCCGCAGCGCATCGCCGAC 1517632 29 96.6 32 ............................G CCCCGCCAGGCGGGCAGGTCGGTGTAGGTGAG 1517571 29 96.6 32 ............................T GCGGCGGCTTATGGCCGTCGAAGAGGAGGTCC 1517510 29 100.0 32 ............................. CCGGCGACCAGGGGCAGGCCCAGCAGTAGGGC 1517449 29 96.6 32 ............................T GTCTTTGGTCGGGGGTCCGGCCGGTGGTCGAC 1517388 29 96.6 32 ............................G CCGACATCGCGTCCGAGGCGGGGAGGGTTCAA 1517327 29 96.6 32 ............................G GCTGGGCCCAGGACGCCACCGCCGGACCGGTC 1517266 29 100.0 32 ............................. TACGTCGAGCTTGCGACGTTCGCTATCCCGAA 1517205 29 100.0 32 ............................. CGATCGTCGTACTCCGGGACCTGGTCCGAGCT 1517144 29 100.0 32 ............................. GGCGGTTATCTGGTCCCGTTCACCCTGGATCC 1517083 29 100.0 32 ............................. CACCACGGCTCACCAAACCCTCTGCCGCGCTC 1517022 29 100.0 32 ............................. CAGCTACGGATCAACGGGGTCGCGGTGTTGGC 1516961 29 96.6 90 ............................G TCCAGCGACTCGAAGAACGTCACCACGGAGGTGTCGTCCCCGCACGCGGGGTCTTCCGGAGCGGATCAACCGCACCGGCCGGGCGGAGGA 1516842 29 96.6 32 ............................G TTGCCCGACATCACGGAGCGCCGAACCCGCCC 1516781 29 96.6 32 ............................T ACCGAAGGAATGTCGATGACCCGAGCTCGCCA 1516720 29 86.2 53 .............A.A.C......C.... CACGCACGTGGGGGTGCTCCGCGGACCTTGGATCCGCCGGTGGCGGCGGTGGT C,A,G [1516696,1516699,1516707] 1516635 29 72.4 79 ...C.....A.G.A..T......GC...G CCGTCGCTGAGAACGTCCGCACAGAAAGCGAGGGTGGGGGTGCTCCGCCGGCGCTGTTCGGCCAGTCCGCGTCGTCGGT 1516527 29 75.9 0 ...C.....A.G.A..T.......C...G | ========== ====== ====== ====== ============================= ========================================================================================== ================== 111 29 97.4 33 GTCGTCCCCGCACGCGCGGGGGTCTTCCC # Left flank : GACGACCATTACCACCGGAAAGCTCGTCGAGCCACCACTTGACACGGTCAGCGAGATAGCTGTCCCAGATCAACTCTCCAACCGCGGCGGTATCCAGGAGATGCTGCAGCAGCAGGTTGGGATACCCGCCAGCATTCGACTTCCCCCACAACGCGGCAAGTGCACGGGCATGGTCCGACGACATGGCGGCGACTGTAAAAGCCACCACCGACATATCCTCACCCCGCCACCTGGTGAGTCGCCTTCCCGACACAAGTCGACTTTGACCCCACCCAGATTCATTTCCGTGCTCGCGAAAACCCATCCAACGAACCAGCCGTACGGCACCGAGGGACAAGGCCCTGCGTCGCGCCCGCTGGTGACCGGCGCTCCGTAGGATTGAGTGAACGCGGCGATCGAGGAGGCCACCTGCCATGACACCGACGTCCACGCGAACCTGATCGATGAACCAACTGAATGAATTTGCGATGCCTGCGCGATAAAGCCCCAGGTCAGCAAGT # Right flank : CCGAGGTGTCGGCGTTTTGGCGCGACCTCGAGTCGGTGTCGTGTCCGGCCCGGCCAGCGCAATTGAGGTCACGGGGCGGCCCGGTCAGGCTGCCTGGTGCCGCGTATCGCTGATGCGGAACGGGTGGGTGTACTCAGCACCGCAGCCGGCGCACCAGGCCCGGAACAGCATGCTGGTCGCGGTGTCGCCGAGACTTGGTTCTACCTCGTAGCGAGTGCCTTCGATCATGGCGTAGAGGTGCCGCCAGCGGATCGGGCAGAGGCAGGCCGTCGCGCTCATGCCATTGCCTGCCCGTCCTCGGGATCGGGGGCTCGCCACTCTCGGGGCTTGGCGCCGGTGGCGTCGGCGACTTGGGCGACGTCGCGGTGGCTGTAGGCGGTGCGCACGCCGGAGATGGACAAGCCGGCGGCTGCGGCCAGGTCGCCCAGCGTGTAGGGGCGGGGTTGGACGAACTCGCGGCCGTAGGCGATCAGCTCGCGGATCCGCTGCTCGGCTTCCTC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGGTCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2222540-2223667 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMHU01000002.1 Micromonospora inyonensis strain DSM 46123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2222540 30 96.7 31 .............................G CGGCGGCGTCGAGTCTCGGCACCACCATCAA 2222601 30 96.7 31 .............................G CGTGGTCAGCCGGCGGCACTGAGCCGACCGA 2222662 30 96.7 31 .............................A CGCCAGCCCTGGACCGGCGGGTGACCTCACC 2222723 30 96.7 31 .............................G TACGGCAGGCCGTCCAGGCTGCCCGTCACGA 2222784 30 100.0 31 .............................. CGGACCTTGAGCTGGTCGTGAACGACGTCCC 2222845 30 100.0 31 .............................. CGCACCAGTGGATGTCGGCGCCCGCTGGGCG 2222906 30 100.0 31 .............................. GCCCGGTCCGGGCCGAGGTCGTCGGTTCGGT 2222967 30 96.7 31 ............................A. CACCCACCTGGATGTGGTGACGCGCGCCGTG 2223028 30 100.0 31 .............................. CGATCATCGCTTATTCGTACGCCCGGCTGGT 2223089 30 100.0 31 .............................. GCGAGCCGTTCCCGTGGACCACCGAATACGG 2223150 30 100.0 31 .............................. CGAACGCGACCGCCAGGGCGAGCACGGCGGT 2223211 30 100.0 31 .............................. TGCCGCCGCCGCCGCCCGGCGGGCGGGCGCT 2223272 30 96.7 31 .............................G CGGCGCAGCCGGTCCGGGCGTCCGCCCCGAA 2223333 30 96.7 31 .............................G TGACGTCAATGTTCCCGCCGGCCTGCCGGGC 2223394 30 100.0 31 .............................. CGTTCAGCGAGTCGAACAGCGATGGGCTGAA 2223455 30 96.7 31 .............................A GACGGTGTCTATCTGCACCCGCCCGGACCTG 2223516 30 96.7 31 .............................A TGGCGCTCCAGGTCGCTGACTACTGCTTCCA 2223577 30 93.3 31 ............................AG TGCAGGGGCAGCAGAACCTGCGGAGGGCTGC 2223638 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 19 30 98.1 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Left flank : CACGGCGGCCGCGGATCGTGGTGGCCGAACAGGTGGCATCGGCGATCGCCTCGTAGGCGCAGCCGAACCGCAACACCTGGACCAGCTTGTCGAACACGATGCGGTCATCGATCCGCTTGCGGTGACAGCCCAGCGGATGTGTCGGTTGGTAGGTCGGCCGATCGGGGAGCAGCGCGGCGAACTGGACCCACAACGGCTCGATCAGCCATGCTGGGATGGCAGGCACAGAACCTCCCGTGATCACGGAGCGTCAGCAACTTCATGATCACCAGTTCTGTGCCTGCATCCGTTCAGGCGCGCCGATCAACCCACCATTCCGCGCGACCTCTTAGACTTCCCCCAGATCCCCGCATCGACCTGTTCCTGATCGGAACTCAACCCGCCGTCCTCCGTCCACATGCCACTCACAAGGGCACCGCATGCAACCACAGCCGTACGACATCTCCAATCACCCAACCAAAAACCAGGCACCGGCCAGATAAAAGCGCAGGTCGCGAAGT # Right flank : CGGAGGTGGTTCGGGAGGCGTGGGCGCAGGTTCGATGTAGAACGACCAGAAGTAGTTCCCGCGCATCTTCGCCGTGTCCCGTCGCAGCCGCACTCCGTCGCCCACCAGACCATCGTGCACCGCGGGGCCAACCCGACCGCCCGCACGGGATGGTCCCCCACGCCGGGGCTACGTCTCACAGGTGCCACGTACATCGAGATCAGCTCGACGACTACGCCGTGGTCGCGTGTGGGTGGGCGGGCTGCCGGCCCAGAACATGCGACCCGGCCCGGGTGGTCGCCGAGGGGCGTCCACCCGGGCCGGGTCGCCGGGTCAGGCCGGGTAGGTGCGCGGCGTCCAGACCACCACCGAGTCGTCGCCCCGGGTGCTGACCTGGGTGGTGGACGAGCCGATGATCAGCAGGCACTTCATGTCGACCGTCTCCGGGTCGAGGTCACCGAGGGACACCACGGTGATCTTCTCGCCCGGACGGCCCACGTCCCGGGCGACGACCACCGGGG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2655567-2655717 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMHU01000002.1 Micromonospora inyonensis strain DSM 46123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2655567 28 100.0 34 ............................ AGACTGCACCGCGCGGCGGGCCGGACCGGTGTCC 2655629 28 100.0 33 ............................ CAGCGCACACCTGTCCGTGGTCGGGATGTCCGG 2655690 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 3 28 100.0 34 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : ACCGCCAACGCCCCCTCCCCACCCCCACCAGGGGCACTCAATGCCAATCACCCAGCAGCGCACCACCGCCTCGGCCGTCGGCCATCTCGTTCCCACGCGAAGCAGCCCCGCGCACCGCCACTCATGTCCGCAACCAGCTCGGAACCGATGGCCTCCGTTTCACCCAGACACAACGACAGAGGCCCACCGCCTCGCCCTGAAATCCAGGGCCGCACACACCTCGACCAACAGCTCCTCATCACTCAACGCGCTCATCCCACCACCCCCCCGTTACCCCACGACTGAATCCTGGCAGTGGGTTCACCACCCGGGACTGCGTAGGATTTCGGCCCTGTCTCACATTCGGTGGTGACGGAGAGTCGTGGGGGTCGTTGACACTGGCGTGAAGGATGTCGATGAGCTTGCGCGGACGGTGTTTTCGGGTCTTTCTCCGCTGGTCGTAGCGGACGTGGCGACGAGGGCGAGCGGATCGTGGTGCGGGGTCGCCGCGATGACGGACG # Right flank : CCGTGTTGCGGGTGGCCGGGCCTCGGCCGGGTAACTGCTCCCTGCGGATCAGGCCGCTGCCGCTGGCCGCCCCGGCGTCATGGCGAACGACTCGGTCAGTCCGATCCGCGGGGACGCCGCGTCCACAAGGTCGACCTGTTCGCCGGGTTGGGCCGGGATGAGGCCAGGCAGCGCGCTGTACAGGGTGCTGCGCGAGACGCCGAGCAGCTTGGCGATCGAGGTCATCGTGCGGTTCGGCTCGGCGAGCAGTTGCAGCGCGTACGCGACCTTCTCCGGGGTCATCGCCGGCGGCCGGCCGAGGCGTTGCCCCCGGGCACGAGCGGCGGCCAGGCCCTCGTTGGTGTTGGCCACGATGATGGTGCGCAGGAACTCGGCCAGCGCGGCGAAGACGTGGAAGACGAACATCCCGCCAGCGGTGGTGGTGTCGAGCTTCTCGTGTAGGGACTGGAATCCGACGCCGTGGCGCTTGAGCCGGCCGACGATGCCGATCAGGTCTTCCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //