Array 1 157808-156095 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJQW01000018.1 Listeria monocytogenes strain NRRL B-33997 PROKKA_contig000018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 157807 29 100.0 37 ............................. GCTTCAATGATTTTATCAATGTTATCAATCAATCCAC 157741 29 100.0 36 ............................. AGGGTTGAGATAAGCAGCCCACCGCACCAGCAACAT 157676 29 100.0 36 ............................. CTCTTCTCGTGTCGCTTGTTTTGCTCATTCCGCCAC 157611 29 100.0 37 ............................. ATAAATTTCGCTACTTTATCAATCATTCCAAATCTCC 157545 29 100.0 35 ............................. ATTACATTTATTAAACAATGTACAGGTTGAATTAA 157481 29 100.0 37 ............................. CTTTTTATATATTGTGCGCTTAACTTAGTTGTTAAGA 157415 29 100.0 36 ............................. TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC 157350 29 100.0 36 ............................. CCCTGTAGGATTAATATACAAAGGTTCTCGTTTTTC 157285 29 100.0 35 ............................. AATGCCGAAAGGTTCGCTTTCATTTCGCTATTCAC 157221 29 100.0 35 ............................. TTGATAACATCTTTTACTGAAAGACCTGCCTTTAA 157157 29 100.0 34 ............................. TTGGATGCAAAAACTTTAATAGCCTCTGCATCAA 157094 29 100.0 35 ............................. TTATCTAACCAACCCCGCAAAACAGTATCAACAGT 157030 29 100.0 37 ............................. TTGGTTTATCAAGATGAATGCAACACACTTGCGCCAT 156964 29 100.0 36 ............................. AAGAAACGCAGGAAGAAGCTCCACGCCGCAAGCGTC 156899 29 100.0 36 ............................. GTTGTTAATGAAGAAGGAAAAGGTATTTTGAAATTC 156834 29 100.0 35 ............................. ATTTTATTACGGCTGGTGAGTTGTCCGCCGCACTA 156770 29 100.0 34 ............................. GTCGATACAATCAACAAAGAAGCGCTAGATATGA 156707 29 100.0 35 ............................. ATGAGTGCATCATAACGTTTTGCTACATAAGAAAT 156643 29 100.0 36 ............................. AAAAGTTCAAGAATTTGAACCATCCATTTAGCCCCC 156578 29 100.0 33 ............................. ATAGACCGTTTTTTCAAAGCCATTTATCAACTG 156516 29 100.0 36 ............................. ACTTTCTGTCAACGTGACAGGCATCGGAGATTTAAT 156451 29 100.0 37 ............................. AAAATAATCATTAATGCAAACGCAATACAAATGACTG 156385 29 100.0 38 ............................. GTGGTAACAGCGTTCTTATTTCCTGGCGGAGCGCTTCC 156318 29 100.0 34 ............................. TTGGTCCTTCCTATCCCTCCACCTCTTTGTTTTT 156255 29 100.0 37 ............................. TCGTTCGACGGCTTAGACAACCATCACGCTTCTTTAA 156189 29 100.0 36 ............................. CCTAATACACCTAAACTACTCTTATATATAAAAACA 156124 29 93.1 0 .......................C....C | A [156099] ========== ====== ====== ====== ============================= ====================================== ================== 27 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATCGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGGAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAAGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCAAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCTTGCAACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //