Array 1 437563-438012 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWXB01000013.1 Cronobacter malonaticus strain CMa3 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 437563 28 100.0 32 ............................ CAATGCACGAGGACGAATACGTCTGCTACGTG 437623 28 100.0 32 ............................ GCCGAGATGGAAGCTGAAAACGATTTAGTAAC 437683 28 100.0 32 ............................ AGTAGCCGTTCAGCGATAACAGCTCACCCCGC 437743 28 100.0 33 ............................ AGTCGTCCGGCGCTTTGCCGGTGATTTTACAAG 437804 28 96.4 32 ......A..................... GTCATGTGGGAGTCATTCCAGTCGATTTACCC 437864 28 100.0 32 ............................ ACGCTGAAGGGTAGCGAACAATATATTGCAGA 437924 28 100.0 32 ............................ CGCTTATCACACCAAGCGAGCTGGCCGCTCGC 437984 27 92.9 0 ........................-..T | T,G [438004,438007] ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGTGCGGATGAATGCCGGTTTCAGGCGATGTTGTACGGGCATTAGCTACCCGAAATCAGCGGAAAAGTGCCTGCACAGAATGAGGGAAATGCGAGAGTGAACGCACCAGGGAGCAAACAACCAAACGGATAGCGCGATAAATGTGTGGGCATTGCGCCTGGACGTCTAACCCCTTTTTTATGCTCCGCCTCTAAATGGTTGATTTTTAATACGCGTACTGCGGGTGATGAAAAAAGGGTTTCAGGCGCAGAAAGGCAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGTGTATTCTCTCTTCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCCGGCAAAACCGCGTTCGCCGGTAAAAATGTCACGACCTGGGGGTATAACGGTTCTCTGCTTGGCCCGGCGCTTAAGCTGCGCCAGGGCAAACCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAGACCACGGTGCACTGGCATGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 900805-899921 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWXB01000010.1 Cronobacter malonaticus strain CMa3 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 900804 29 96.6 32 ............................T CGCGTCAGCTGTGGTTATCGTCTCGTCGTAAA 900743 29 100.0 32 ............................. GCGAGGTCTGCGTGCAGCCCGTCTGGGACGCG 900682 29 100.0 32 ............................. TCGGGAAAGGGCAAGTCCGAATGCGGACTATT 900621 29 100.0 32 ............................. TGGGCCCGCGGGCCCACTTCGTAACTACTCAA 900560 29 100.0 32 ............................. CGTCGCAGGGTTTGTTAATAATGATTCCGGGC 900499 29 100.0 32 ............................. CGCCTCTATCTGTCGCAGGTTCGCGGCCAGCA 900438 29 100.0 32 ............................. TCTGCGTTTTTTGCCTCATTCTTCGAAAAAAA 900377 29 100.0 32 ............................. CCAGATACCCGCGACCCAGGCGCGCTTAAAGT 900316 29 100.0 32 ............................. TCGGCAGGCTAATAGAAAAAACGTATCTGAAA 900255 29 100.0 32 ............................. TGGATATCACCCGGCAATGGCCGGGGAACAGC 900194 29 100.0 32 ............................. CGCCCCTCTCGGGGCGCGCTCCTGTTAGTCTT 900133 29 100.0 32 ............................. TCCACGAAACAGCAGATCGCCGACGATATCCG 900072 29 100.0 32 ............................. CTTCGGCAACCGGATCGGCTTTGCCTCCATAT 900011 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 899950 29 93.1 0 ...........TT................ | G [899929] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAATGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACACCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : CCCAGGTTCTTCACGCCTGTCAATCGCCTCCCCTTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCAGGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGATTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //