Array 1 101881-101266 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLJ01000002.1 Akkermansia muciniphila strain GP13 scaf-2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 101880 31 100.0 34 ............................... CGGGTCTTCGTCATCGTCCAGCCCCCGGTCCGTC 101815 31 100.0 34 ............................... TCCTTTCCGTCGATGATAGCCTTTAATTCACCAA 101750 31 100.0 34 ............................... TGTGTCCTTCTCATCGTCCCCCTCTCCCGTGTCC 101685 31 100.0 34 ............................... CTGAAACAGGCGCGGGACGATAAAAACATCCCTG 101620 31 100.0 34 ............................... GATGTATTGGAGGTGGGCGTATCCATAAAACATG 101555 31 100.0 33 ............................... AGCAGGGATGGGCGTGTGTCCGATGTGCTGGAG 101491 31 100.0 34 ............................... GAGTTTGAAATGGATTATCGCGGCGACTACAACT 101426 31 100.0 34 ............................... CGTGCTTGCCGTGGGGAGGGCGCAAAAAACGGCT 101361 31 100.0 34 ............................... ACGTTGATTTCCCGGTCTGTCAACTACGACGGGA 101296 31 87.1 0 .........A......C............GT | ========== ====== ====== ====== =============================== ================================== ================== 10 31 98.7 34 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : GAGAGGCTGGATAGCCAGACGTCTTTATCGGGAGATGGATTGGACGCTCCTGGATGACCGCGCTCCGGAAGATTGGACGATTGGACGGGAGGTGTTGGCCAGGGTTCCGGCAACATTGTGCCGCATTGATGAGCCATGGCGCAAACGTTCCCCGTGGAGTGTATGGACGGCCTGGTGCTGGCCCAGCCGCACGGTAAGCGCCGAGAGTTACGCGGCCAGGTTTGCCGTGGTGATTACCGGCAGCCCCCGCATGCCCGATCAACCCGCCAGCGAGCGGGCCAGGGTGATGCACCTGCTGGCCGACGCCAGGGAGAGGATGCTCCGGGAGGGTGTGGTCAGGGAGGACGACGAGACGGTGGATTGGGGTGACCTGCTGGCCGCTTGTAAGGGGGAGGCAGAGTCGATGCAGACCCCCTGCACGGAGCTGGCAGACAGACAAGTTATATAAGATACTTGTCGTAGTTCTATCAGATGTCTTGGCGCGTTACACAGTAAACCCG # Right flank : TTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCTTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCATCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCCT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 135618-135131 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLJ01000002.1 Akkermansia muciniphila strain GP13 scaf-2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 135617 31 100.0 34 ............................... CTGGCACAACGACGCCTCCCTTGTCGTCAAGGAC 135552 31 100.0 35 ............................... CGTAATGCCCCCGTCGCTGCTCTGGGTGGTGGTCT 135486 31 100.0 35 ............................... TTTTTATTCTTTGTGCCTGATGCAGATTCCTCCCC 135420 31 100.0 34 ............................... CTGGGCTTGGTCAATGGATTCCAGCAGCGCTTCC 135355 31 100.0 34 ............................... TTCAATTCCGCGATACGTGTGAGCCTTTCGTTTT 135290 31 100.0 34 ............................... ATTTACATTTACCGTTCCGCTCGTAACGACAAAA 135225 31 100.0 33 ............................... TATATTCGGCCCATGCTTCGGCAATGGTTTCTT 135161 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 8 31 100.0 34 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAACCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGAGGAAGACAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTACTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTGCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGGCCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : AAGGTATGTTCCATGCGACGCACAGTTGAGGAATGACAGGAGAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGTAGGAACAGGCCAGATACGAGCTATCTTATAAAAGTCGGAGCTAAAAAGAGGGCAGATGACAGGTATCTGATATAAGTACACAAGCTATGCAGGGATGCTGCACAAGAGCTGCAAAGGGTAGGTGATAGAGAAAACGACAAGGTAAAAAATCATGATAGGATGTCCCGCATGTGTACACCTGCATATTGCATCCCCTTGTATGGCTCCATGACAGTTATCTCGCCCGAAGACCGAAAGAAAAAGAATCCGCAAATTTATCATCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAAAGAAGTAAGACGACATGCTGGGTGCGGGATGTACTCGACAATGTGTGGATTGTGATCAGGAACGAAAGAGAAGATGATTGAAAAGAAAAAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 167917-168212 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLJ01000001.1 Akkermansia muciniphila strain GP13 scaf-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 167917 31 100.0 34 ............................... TTTTAAATCAGTTCCGGTCTAAAATCGGCGTCAT 167982 31 100.0 34 ............................... GTCCTGTCAAAATCCGAATTTGCAGAACATTCCC 168047 31 100.0 39 ............................... ATGGGTGGACTGCATCAGGCTTCTTGGAGACGACATGGA 168117 31 100.0 34 ............................... CGGGTGGTCGGTCCGCGTGGCTCCCTTTCCGGCT 168182 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 5 31 100.0 36 GTCGCACTCTCATGAGTGCGTGGATTTAGAT # Left flank : GCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGCGCCTCTTCTTTTGTGGAAAACAAAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGTTAGGATGTTTCCGCATCGTGCACAGGCTCTGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTACGACCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGGTAATCAGTGCCATAGACGCCCAGGA # Right flank : TGTCGTAGATTGAACGACCTAATATCCCTAGAATGAGAAGGAGCAGTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGCGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCTGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 176684-179275 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLJ01000001.1 Akkermansia muciniphila strain GP13 scaf-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 176684 33 100.0 35 ................................. CGGCCATAAACGTATTGCCGCCCTCAAAAACGTTA 176752 33 100.0 34 ................................. TCATCAGTGCCAGCAACGATGAAACCCCCCTCAT 176819 33 100.0 34 ................................. AATGATACTGTGCGCGTGGAAACCGGGAAAATCG 176886 33 100.0 34 ................................. CCGGTCAGTCCGGGCTTGTCACGCCAGTAGTCCG 176953 33 100.0 35 ................................. CGGCTTCATCGACGATAATCGGAACCTTGAAGCCG 177021 33 100.0 36 ................................. TACAATGCGGTATCTTACAGCAATCCGGTGGTATTT 177090 33 100.0 35 ................................. GTTTTTTTTGTTTGGTATATCTTTTTGCTTGGTTA 177158 33 100.0 34 ................................. TTTTTCTCTGACAAAATGAGGTCGGAGAACGGCT 177225 33 100.0 35 ................................. TGTGTTCAAACCTCGTTGCTTTACCCAAGCCTAAT 177293 33 100.0 35 ................................. TCCTTACGTTGTTTTACGAGGTATCATCCTCTCAG 177361 33 100.0 35 ................................. AACGTCCAGTTCATCGTAACAATCCTGTTGTGCTA 177429 33 100.0 34 ................................. TGCATGGCGATCTTCATTGCTTCCAAGCGGGAAA 177496 33 100.0 34 ................................. ACGAACCATAGCAAATCTTCCATTGACGATTGGA 177563 33 100.0 34 ................................. CTTTTCTAATTTGCAACGATTGCAAATTTTTTTC 177630 33 100.0 34 ................................. TTTTTCTGCGCCTGCGCCGCCCGCTGGACTTCCA 177697 33 100.0 34 ................................. ATCGTCTATGCCGTCTTTATAGGAGGCGGCGACT 177764 33 100.0 34 ................................. CTTTGAAAGCGCGCTCTATGCGCTGCCCAGGAAA 177831 33 100.0 34 ................................. CGGTCATCCCTCGCAGCATCATCCTGCATTTCTG 177898 33 100.0 35 ................................. GCCGCCTCCTTCCTGTTCTTCTCCTTCCGGGTATT 177966 33 100.0 34 ................................. CCGTTGGGCGGGTAACAATCGCAATATCCTATTA 178033 33 100.0 35 ................................. CTTTTGCCAGTACGGAGGAATGCAAGGCCCTTCTT 178101 33 100.0 34 ................................. AATAACTCTACACGATATTGGAGGGGTAGCTCGT 178168 33 100.0 34 ................................. CGTTTTTCCCCTCGAAAAGTATTTACAGTTTTCA 178235 33 100.0 34 ................................. CACATACTTGCGCCCCGCCCGGACAGCTCCAAGC 178302 33 100.0 34 ................................. ATAAACTTTTGTTTTTTGGATGTACAGCAGCACG 178369 33 100.0 34 ................................. TTACTCTTCCGCAAAATTGTACCAGCGCATCTAC 178436 33 100.0 34 ................................. CGGAGAGTGGGCACGGCTAAGGCCCGTGAAATTG 178503 33 100.0 34 ................................. TCCATTGCCGCCCTGCATGCTTCCCCGCATTCTT 178570 33 100.0 35 ................................. TTAGTTGCCGCCAGGGCCTCTTCCGTCAGCCAGCC 178638 33 100.0 34 ................................. AATAAACCCGTACAGTTCCAGCGTGCCGGAAGGG 178705 33 100.0 35 ................................. CTCAGCATTGCTAATCCTGATAACGTCAACCAGAA 178773 33 100.0 34 ................................. TCCCGGTGCTGCCCGGTTCATGGCTGCCACCCTT 178840 33 100.0 35 ................................. ACACGTTTGCAGGGCCTGCCGGGCAATGGAATTAT 178908 33 100.0 34 ................................. GACCTCAAAAGCGGCCAAATCCGCAACTACTGGG 178975 33 100.0 34 ................................. CGCCGAAAACGTCCCGCAAAAACAGCTCGCAGAG 179042 33 97.0 33 ............G.................... GACCATATCCCCCCAAGGGAATTTTAGAAAGGA 179108 33 100.0 35 ................................. CACAGCCTCCGGGCGACCGCCGTGACCGTCCTGCG 179176 33 100.0 34 ................................. TCCATGATGTCCCGGTCGGAAAATCCAAGGTCGC 179243 33 93.9 0 .....................A....C...... | ========== ====== ====== ====== ================================= ==================================== ================== 39 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : CATGACGAGTGCAAGCTTCGAGAAGATGCCACCCGCCGTACTCTCCAGGGAGTACGTAACTTATCTGGAAAAGAAAAAGCTCTCCGAACTTGTTTGGTCTAGAGAGCTTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAAGATGGGGTCCTGCGGTTCGGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCTTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 247353-247653 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLJ01000001.1 Akkermansia muciniphila strain GP13 scaf-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 247353 37 100.0 29 ..................................... TAAATTCCCTGATCCGCTCATGCTGAACA 247419 37 100.0 29 ..................................... GAAAAGCTTTCACAGTTTGCGGGCCACAG 247485 37 100.0 29 ..................................... AAGCAATTTTTATACGGTCAATCATCAGG 247551 37 97.3 29 ....................................T TTCGGCGCGCTGGACAAGGGGTTCAATCG 247617 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 99.5 29 ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACA # Left flank : CTGTCATGTACCGGGATAAACAGCTGCCGTTGAAAGCGGCGGTAGAGGCCGTTTGCCGCAGTTTCCGCAAAGCAGTTCTTGCCGGACAATCCGGACCGTATGAACCATGGCTTATGACAACTATAAAATGGGCTGGCTAGTTGTGTTCTTTGATCTTCCCACAACCACGCCGGAAGATAAAAAAAACTATCAATATTTCCGTAAGGCTCTTTTAGAAGACGGCTATACGATGATTCAGTATAGCGTCTATGCCCGCGCGTGCGTTACTCAGGAAAGAATGGCTACCCACTCCCGCAGAATCCAGAAAATGATACCGCCTGATGGTTCTGTCCGCTGTCTTTTCGTTACGAATATCCAGTGGGATAAGATGTTCGTTTTTCATGGCAGGTCTTGTCCCCGACAGGAGGTTTCCCTGCCTCAGCAGATGCTCCTCTGGTAAAAATATCGGACGCCGTATTTTTTTATAAGTCGCTGAACATAAAAATAAGGCACAGTATCTA # Right flank : AAATGCGCCTCCGGTCTGATGGCGCAGGGGATTGCTCCGCCTTTGGCCACGCAATTCCAGACGGATTTTTGTCAGTCTTCCTTTAACGGAGCGGGAGAAACAAAGCTGTGCGTCCAGAACATGGCGCCGGTTGCGGAGGTGATGCCCTCCATATTAAGATAGCGGGCCAGCAGCAGGGAGGGGGAGGAGTGTCCCATCTCCTTCTGGAGAAGGTTTTGATTGCAGAAATGGGCCAGGTGGTAGGAGGCGTAGGTATGCCTCAGCACGTCCTGAACCCATCCGCTTTTTTTCAGGATGCCGGACCGGCGCCTTACTTCCCTCCATTTCTTTTCCCAGTTGGGCGGGCAGACGGAACGGGCGGGGGAACCGGCGGAAGACATCCGGCTGAGGATGGAACCCAGCACGGGAAGGATGGAAACATGGCGGCTCCCTCCCGTTTTGGTATGGGTGGGCGCCAGTGAAACTAGGCCGGATTTCAGATTGATATGCTTCCACGTCAG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //