Array 1 108022-106124 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOZ01000001.1 Salmonella enterica strain BCW_4893 NODE_1_length_415915_cov_3.17357, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108021 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 107960 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 107899 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 107838 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 107776 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 107715 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 107654 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 107593 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 107532 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 107471 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 107410 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 107349 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 107288 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 107227 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 107166 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 107105 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 107044 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 106983 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 106922 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 106861 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 106803 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 106742 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 106681 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 106620 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 106559 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 106498 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 106437 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 106376 29 100.0 11 ............................. CGGCCAGCCAT Deletion [106337] 106336 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 106275 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 106214 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106153 29 93.1 0 A...........T................ | A [106126] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125920-124304 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOZ01000001.1 Salmonella enterica strain BCW_4893 NODE_1_length_415915_cov_3.17357, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125919 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 125857 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 125796 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 125735 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 125674 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 125613 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 125552 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 125491 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 125430 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 125369 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 125308 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 125247 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 125186 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 125125 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 125064 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 125003 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 124942 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 124881 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 124819 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 124758 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 124697 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 124636 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 124575 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 124514 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 124453 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 124392 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 124331 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //