Array 1 596-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYX010000009.1 Pectobacterium atrosepticum strain NY1720A NODE_9_length_115188_cov_11.3451, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 595 28 100.0 32 ............................ AGTCCGTCACGAACTTCAAAACGTTTAGCCCA 535 28 100.0 32 ............................ AGCCTGGAAGACATCGCCGGTCAATCGGGGCG 475 28 100.0 32 ............................ ATTTCCTTTTTCAGTGCATCCGTGCGGATTTT 415 28 100.0 32 ............................ CCGATTAGTGAATATCGGTGTCGGCACACCTC 355 28 100.0 32 ............................ AGATTAATAACGTCACGTTCCCAGGCGAGGTG 295 28 100.0 32 ............................ GCACATATCATCGCACGCATCCAAATGCGATG 235 28 100.0 32 ............................ TGGCGACACAGGAGATTGCCAGCCAGTCAGGG 175 28 100.0 32 ............................ GCAGAGACTATCGATACGGTCTGGACGGATGC 115 28 100.0 32 ............................ TGTGTCGGATCGGCGTCGGCGTTGCCGTCAGG 55 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTACGGAGGTACCCGTTCCCAACATCACAACACTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTTCCGTAATAGATAATAGCCATGACGCCAGCTTAATAAATCGCAGGCTAACTATTTGATAAGGAAAAATATAATCTTCAGAAAACTGATGAAAATCAGACTATCACAGTTGCATGTGAAAGATGATGACCGCAAAAAATATTACCTAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATAGGGTTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : ACTCGGCATACGCCAGTTGGGGAATAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10637-11144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYX010000009.1 Pectobacterium atrosepticum strain NY1720A NODE_9_length_115188_cov_11.3451, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10637 28 100.0 32 ............................ TGGCTGAATGAGGCCGTGGAGGCTGCGGCTAC 10697 28 100.0 32 ............................ CAGTCGCTACCAAGCGCATTAAGTGCAGGGAC 10757 28 100.0 32 ............................ TGGTCTTCACTCAACCCTTGCGCACTGGCCAC 10817 28 100.0 32 ............................ ACCTGGAAGACGCACTACGCCTGAATCCGCTG 10877 28 100.0 32 ............................ TTGCTTTAACAACCACCGTCTGAACTCACTGT 10937 28 100.0 32 ............................ CAGCCAGCTTATCAGGGGGCCATCAAGCCATC 10997 28 96.4 32 .............C.............. AAGCAAATAGACTCCATATTTGAGCGTAACGG 11057 28 96.4 32 .............C.............. ATCGCAGTGATGAAGATCCCCGCAGCCTCCCC 11117 28 75.0 0 ............GC......T.C..GGC | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAGAAACGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCTTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGTAAGCGAATAGCACGATTATTACCATTTTTAAATACTGAGACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCCAGCCGCTAGCCTGACTAAAACATAGGTTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTGCCACAGGGTTGGCACCCTTTTTTCACGGACACTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAAC # Right flank : CTTATCGGGGATACGTTGCTGGTACGACTCGCTTCAAGGGTGTTATTCCCCATTCAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATGCCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTATTTCCTAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAACGATTAAAGAAGCTCTCGAAATCCTGCCGTACCGTGGGATCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACCTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGAGCCAGAAT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 173659-172370 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYX010000005.1 Pectobacterium atrosepticum strain NY1720A NODE_5_length_173685_cov_11.3593, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 173658 28 100.0 32 ............................ GTTTGCAGGGTCAGACCACGACACCATCGCCT 173598 28 100.0 32 ............................ ACCCGCAATTTGACAGACGAGCAACGCAAGCT 173538 28 100.0 32 ............................ AGCATCACGTCGTGGGTCAAATACTGCGACAG 173478 28 100.0 32 ............................ ATCGTTACACGGCACATAGATTGCGTCCGTAA 173418 28 100.0 32 ............................ GTGTGGGCCAGCCGTACAGGTGATTACAAAGA 173358 28 100.0 32 ............................ GGAAAGTTGATCTACACCGACGAGCCTAACGC 173298 28 100.0 32 ............................ AGCGTAGACGCGAACTCATGCGCGAATTGCTC 173238 28 100.0 32 ............................ TGTTGAGCTAACTGGTAGTTGCTGCGGTCTGG 173178 28 96.4 32 ...........C................ GATCTACCAGCCTCAGACACATTAGCCCCCGC 173118 28 92.9 32 ..........AC................ TGGCACGGATACATCCACTTCACTGACGCGCC 173058 28 96.4 32 .........A.................. AGTGTAGTGATATAGATTGGCCGGCTCATTCA 172998 28 100.0 32 ............................ CGGTGATGAGTGCCTGATTATCTTTGCCGATC 172938 28 100.0 32 ............................ TGAACTAACACGCCATAAGCAATATCAAGCGT 172878 28 100.0 32 ............................ TGTCGCCATAACCACCTGTAATACAGGCTCGG 172818 28 100.0 32 ............................ ACAGATAATTGATAGAGAGACGTCAATTAATG 172758 28 100.0 32 ............................ GTCACATCGTCGTCCCTTCCGAGGACTATGGA 172698 28 96.4 32 ...........C................ GTATCCAGTGACCGACGAATCAGCGCTCGACA 172638 28 96.4 32 ...........C................ TGCGCATTGTGGACAAAATCGCGCGGCGTGTT 172578 28 96.4 32 ...........C................ TCGATAAGGTCTGGGAGCGTATCCGAGTATCG 172518 28 100.0 32 ............................ GTTTACGATTCTGCTCACGTCACTAATTTCAA 172458 28 96.4 33 .................T.......... CACGCGAGATCGCTGTTCAGGCCGAGGCAACCC 172397 28 85.7 0 .....................C..TTC. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCGTACAGTGGCCAGCGAGCGACGGT # Right flank : CAGCACTCAGGCACTGCTGTCTGGTTATTATCGAGGTAGCACTGCGCCAGCGCTCAATGCGCTGTAGCTCTTAAATAACGTATTGTTGATGGCTTATTTTCGTAATATTTTCAAGTAACGGGTATCTTTGGGTGGGAATGGAAAATTGCAGATTGAATGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCACTTACAGGGAAATAGTTTGTTGACTTAAGTAAAATTCGAGGGAATGAGGCACTTGTGAAATACGATCCGGTTTTAAAAACGCTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTCTTACAAACGTTATGCACACCTAATCCTAATCAATCGTGGAAAACAGCCATGTTTGGCTGTACCGATCCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //