Array 1 7122-6827 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBLY010000060.1 Longicatena caecimuris strain MSK.14.15 KGGCEOJI_60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================================= ================== 7121 33 100.0 34 ................................. ATGAATATATGGTAGGTGATAAATATGAACAACT 7054 33 100.0 32 ................................. GGTAATTTTGGAGATATTGAAATCTACGACCA 6989 33 97.0 97 ............................C.... AATTTTAATTGTTCATACGTGTTGATCTGCAGCTGTCGTACCTCTTGTACGAGAGTTGAAATAAATTGTATATGTATACTGCGATCTCCCCGGTTCC 6859 33 93.9 0 ............A.......T............ | ========== ====== ====== ====== ================================= ================================================================================================= ================== 4 33 97.7 55 GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Left flank : AAATGCTTGAATGTATAGTGTTTATGCGGATAATTGAAAATTAGATATAAAATTTAAAGATAACTTCGATAAT # Right flank : TATTGATTTTAGATGAAAAATTATTGAGGATAATCGGTCGTACTTCTTACGAGAAATTCAGATGTCTATATGTAAGTATTTACAAATAAAAAAGGCAAATCCTCTTTGGATTTACCTTCCAAATAACGTATTAATCTGCCTTTTCTGTAACATCCTTCATCTTCTGCAAACCAAAGATAATAAGTCCACCAACTACAAACCATAAAATATCAAAAGAACTAAAACTCAATGGTGCTTTTGGTGTTGACAATGTTTGTGGTCCCATGATGATGGCATAAAAAGAACCAATCATCATACCGATTATCAGAAATATCATAATCGAACGATGTTTATCTAAAGCCCATTTGATAACCCGCACTACTGAAACAATTCCCGCTAAGATCCCCAATGCAAAGACAATCAGGATTGGCAGATAATCTAAGTTAAAGCTAATCACCGCTTTAACAGCACTTATGATAGGAACATAAAGTCCGAAAATCAATAATAAGGTAGAACCACTG # Questionable array : NO Score: 3.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-2.44, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17102-17793 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBLY010000033.1 Longicatena caecimuris strain MSK.14.15 KGGCEOJI_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================================================================================================================= ================== 17102 33 100.0 32 ................................. GCAAGCAATAGATTGGAGTGATGAAGATGAAT 17167 33 100.0 33 ................................. GCTCATAACCCTGTCGACGAGTCCTGAATGCCA 17233 33 97.0 37 ......................C.......... ATCGCTAGAGTTTGTTCCACCTTTTATCTTTAGTCCT 17303 33 100.0 36 ................................. AACCTTTACTTTTGCTTTAGCAGGAGTTTTTAGCTC 17372 33 97.0 34 .......T......................... GATTTAACGAACATCATAAACCAAATGAACAAGT 17439 33 100.0 33 ................................. GATACCTTTCTGCAGCAGGTAGATGATCTACAG 17505 33 100.0 35 ................................. GACCATTTTTTGAAATAATCTTCCAGTACGCTGAT 17573 33 100.0 157 ................................. GAAGTAAATAAAGCAGATGAAGTTATCAGCGAAGGTCGCATCTTGTAAGAAGCGTGAGTTGAAATGATAAAGTATTCGATAGAGCACTCTATGAGAAACGCCGCATTCGCGAGATGTGTGAGTTGAAATTGAATCGTACATAATTATTTGTCAAAGT 17763 31 90.9 0 ....--.A......................... | ========== ====== ====== ====== ================================= ============================================================================================================================================================= ================== 9 33 98.3 50 GTCGTACCTCTTATGAGGTACGTGAGTTGAAAT # Left flank : CGCTTAGAGGCAGTGCGTGAGGCGGATGCGATCTTGCGTGAGGAATTCCATAATGCAGGATTGGATAAAAAGGTTTGGCAGTATTTCACAGTTGTTCCTGATTTTAAATCTGTAGGTGTACGTGATAATGCGAGATGTTTTGAATATCCTGTGATTTTACGTGCGGTGAATACGGTGGATGCCATGACGGCGACGATTGAGCAGATTGACTGGCCGGTATTGTTGAAGATAACGGATCGTATCTTGAAGGAAGTTAAGAATGTGAATCGTGTTTGTTATGACCTGTCACCAAAACCTACGGCGACCATTGAGTGGGAATAAATTTAACTATTTAATAAGTTGGTGCGAATGGGAAGCATACATAAAAAAGCTAAGAGATTCGCACCAATTTTTTTGTATCATATGTTGTAATTTATAGAAAATAATTGAAGAAGTATTAAGAAAGTATATAAAATTTATACATTTCTTCTTTAAATGGTATGTTTTACATGAAGATTTGC # Right flank : TGTTGCATTTGGATTCATGTAAGTTATAACATTTATACAAATGTATAATTTCCTCTTCATTAAGATTTTTAAGGATTAGTAACACCATCGGCATGCACATGAATCCAAACACACCAAATAATTTACCACCTGCATACATACATAACAGCATTAACAAAGGATGCAGTCCTAACTGCTTTCCCATTAATTTAGGTTCTACTATATTACGTATTAAAGTAATAATTAAATATAATATTAATAATCCTATGGCTAGTTTATGTTGTCCTTGAACATAAGAAAACAGAATCCATGGTATCATAATACCGCCGGTACCTAATATTGGAAGTACATCAAAAATCGTTATGCCTAAGGCTATTAGCCAGGCTTTTTTTATATCTAAAATAGAAAGACCTATGACTAATTCAAAGAATGTTAATAGCATTAATTTGATTGTAGCTATAAACATGTTTAAAAAGGTATGAGTGGCAAAATAACGTATAGATAATATGATTTTTTGTGTT # Questionable array : NO Score: 4.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-1.55, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTATGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 29877-30513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBLY010000033.1 Longicatena caecimuris strain MSK.14.15 KGGCEOJI_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 29877 33 100.0 33 ................................. ACCTGTACGCTCATCTGTTAACTCAATTTTGTG 29943 33 100.0 35 ................................. CATCATTGGCAAGTATTAAGCACTTCCCAATTTGC 30011 33 100.0 35 ................................. ATTTCAAACTTGGTTAGGTCAAATCAAATTTAAAG 30079 33 100.0 34 ................................. AAATGACGCTGTATTTATCGATTATTATACGCGT 30146 33 100.0 34 ................................. TCATACCATTCGGGTAATGTCTTTGGTTTTGATA 30213 33 100.0 34 ................................. CCGACGTGAAGACAATTTTTCATCGCATGAATCG 30280 33 100.0 34 ................................. TTTTATAGTGGTTGATTGTTGGTTAGTTGTTGGT 30347 33 100.0 34 ................................. ACCCTTTAAACCGGTCATTTTACTGTCAACATCA 30414 33 100.0 34 ................................. CATCTGTCTAAATACATATAAGTCAGTTGCTATC 30481 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 10 33 100.0 34 GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Left flank : AGGTGATTTAGATGAATATGCACCATTTTTGTGGAAGTGATGATTATGATGGTATTAATAACATATGATGTGAATACAGAGGATAAAGCTGGGAGGAAACGTTTAAGGAAGGTAGCTAAGCATTGTTTGAATTATGGATTGCGAGTACAAAATTCAGTGTTTGAATGCAATGTAAATCAAAAAGAATATGTTGAATTGCAGCATGTATTGTCTACTGAAATCGATGAAAGTAAAGACAGCCTACGCTTCTATCTTTTAGGGAATAATTATAAAAATAAGATTATTCATATTGGAGCAAAACCAACATTCGATGTTACGGAACCTTTGATTTTTTAAATGTTGGTGCGAATGTGAAGCTAACATAAATTTCCTAGGACATTCGCACCTATTTTTGATTATTTTAATTGGATTTTTATGCTTTTATTTGATAGAAATTTAATTTTTATGTTAATTTAATGCAAATATTGTTACTAATATCGAGATTAAAAGCAATATTTGCT # Right flank : TTTTTTGTTTAATGATTTATAAGTAAATTATATATGCCTTTTTGACTATCTTTTTATATCTTCTCAAATGTCCGCAAAGCCTTATTTTATCGGCTCTACGGGCATTTTGCTTTTGTGGTAAACCTCACATATCTAGGTCTATCTTTTTATATTTTCGCTATCAAACGTGGTTAAAATCGTGGTAAATACTTCTATGCGATTAGACGCTGAACCTCTGATTTTGCGGTATCTATGGACGCATGAGCATACCAGTTCATTGTGATACTGATGTTTGAATGTCCCATGATATACTGTAAATCTTTCGGGTTCATGTTCTTGCTTGCCAGCCTTGTGCAGAACGTATGGCGTAGCGTATGCGGTGTGATATGTGGCAAGGGATTGTCCTTGTGTTGCTTGTTGTATTTCTTTACCATACGGACAAATAAGGCATTGTAATCAATCGCAACTTTGGGCTTGCCTTTATGATTGACAAACAGAAAATTGCTCCGTCCGTCTATCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //