Array 1 38278-35602 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRBK01000004.1 Campylobacter jejuni strain CB335 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 38277 36 100.0 30 .................................... ATTTTTTGACTTTCTTTCTCTAGCTTTTGC 38211 36 100.0 30 .................................... GAGTGCCTTTTAAAAATCTTGTTTACGAAA 38145 36 100.0 30 .................................... GCTGTTGAATCGTATTTAGCTACATAGCCA 38079 36 100.0 30 .................................... TGAACTCATGAGACAAATAATAGCTTTTAA 38013 36 100.0 30 .................................... AAAAGGGTTTGGGTTAGGAAGATGAAAGAA 37947 36 100.0 30 .................................... AAAAAAATATACAGGCAAGAATACTCAATG 37881 36 100.0 30 .................................... TAAGTTTTCTTAAACCTTAAAAAGATTTTT 37815 36 100.0 31 .................................... AATTTTCACCAAAACACCAAAAGCAAAAAAG 37748 36 100.0 30 .................................... ATAATTTTTTAAAAATTTAGGAGTAAAATA 37682 36 100.0 30 .................................... TAATTTTTTAAAAATTTAGGAGTAAATTTA 37616 36 100.0 30 .................................... AAAGCCTTTATTTTTTCGCATAATCATAAG 37550 36 100.0 30 .................................... ACCTTTACTTTTAAACCTGAAAGTGTTTTG 37484 36 100.0 29 .................................... AGGGTTTGGGTTAGGAAGATGAAAGTTAG 37419 36 100.0 30 .................................... AAACGCACAGAATGCCCGTTTAAATGCAAA 37353 36 100.0 30 .................................... TGCTTGAACCAAAAGAAGTACTGATAAGAT 37287 36 100.0 30 .................................... TTCTAAAGTGTTGAAATCTACATACTCATT 37221 36 100.0 30 .................................... TTGTTTTAAAACAAGCCGAGAAGGATATCA 37155 36 100.0 30 .................................... TCTGTGTTAATAAAAGCAATAAGTATTACT 37089 36 100.0 30 .................................... CACTGAAGATGTGGGTAGAAGAATGGAAAG 37023 36 100.0 30 .................................... AAAAAAATCGCGTACGCGTACGCGCGCGAG 36957 36 100.0 30 .................................... AGTATCACTGACAGTAAAAGCGAAAGGATT 36891 36 100.0 30 .................................... ATCCTAAATATGTCTGCGCCTTTGGCTCTG 36825 36 100.0 30 .................................... CCGATAAATATTACCCTTTTAAAAGGATTA 36759 36 100.0 30 .................................... AATTTTTTAGTGCTAATGTTAGGATACTCA 36693 36 100.0 30 .................................... TTAAGTGCTGATGAAATATTGGCTGAATAC 36627 36 100.0 30 .................................... CATAATAAATATTTAAAAGATAAAGCTGCA 36561 36 100.0 30 .................................... TCTGCGTTTGAAGCTTTTTTTTGAGCTTGT 36495 36 100.0 30 .................................... ATAGTTATATCAGGGATTTATGCAAATCTA 36429 36 100.0 30 .................................... GTTAAAATGAGATTTTAACTCCCCACGCAA 36363 36 100.0 30 .................................... TTAAGTGCTGATGAAATCATTGCTGAATAT 36297 36 100.0 30 .................................... ATGGAGATGATGATAGCGCTATGAAAGCTT 36231 36 100.0 30 .................................... GCAAGTTTTAAAAACAAGTCAAAAAATAGA 36165 36 100.0 30 .................................... TAGGAATGGAGCGCGGACAAGACAAAAGAA 36099 36 100.0 30 .................................... GGAAGTGCGTTAAATCTTTTAAGATCCGAG 36033 36 100.0 30 .................................... TGGAAATTCTAACAGGTTTATACTCGAGTG 35967 36 100.0 30 .................................... ATAATTTATTTTTTTTGTAGCGTTAGCGTA 35901 36 100.0 30 .................................... TTGCACGACAGAGATATAAATCCAGATGGA 35835 36 100.0 30 .................................... AACCGAGATTTTTAATGTTAAAAATGAAAG 35769 36 100.0 30 .................................... TAAATCTAGCTTGATTAAGTTTCATATTGT 35703 36 100.0 30 .................................... AGTTTTGAGGAACTAGAGCAAGATTTTATA 35637 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 41 36 100.0 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGATAAAAT # Left flank : TTCACTTTCAAAAGACATGAAAAATACAATCTAAGCGAAGAATGGCTTAAAGCTATTGAAAATTTTATAAGACAAAAAGCTGAAAAAGCGTTAGAATTTATCAAAACTATTTAGATTTATATAATGATAAATGATTTTAGTTTTGATAAATTTGAAATTTATGAAAATTTGGTCTTTAAAAAAATACAGCAAAGATATAGAATAAATTTATAAATATAGCTGATACCTTCAAAGAAGGAATTTAAATAATGAAAAAAGAATAAGCTTCAAATCGCAGAACATATTTTACAAATTTGCTATTGAGGAAATGCTACTACAACCCCTAGTTTTATAGTAGAACATATCCAAGATAAAGACTTTGAAAATTTAAGCTTAAAAAACTTGAAATTTAGGTATAATACTGCTTACTATGTCGTTTCATAGTTAAGCCTTTAGGGTTATTTCCGCCAAGAGTGCAAACTCAAGGCGGGTTTTATTAATCAAATCTTGCTTTTTATTCT # Right flank : ATTCCTTTATCAAATAATGAAATTTTAAAGATTTTCGAGAATTTTTGATGAAAAATAGCAAAATTATGCTACAATATTTACAAAAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTAAAATTCAAATAAATTTTGCTGATGGTATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTGGTTTCGTTATTAACTTTTTCATTAAAAACTATACCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAACATAAAATAACCTAATTTTATAAGATTGTTTCTAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 532-1097 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRBK01000025.1 Campylobacter jejuni strain CB335 25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 532 37 100.0 29 ..................................... CTTATTATGAAAGATATGGAAACTTTTAA 598 37 100.0 29 ..................................... ATGGCGTAATTGATGCAGGGGTTGAAGCA 664 37 100.0 29 ..................................... GAAAAATATCAAGGCAGTGTGCGTGTTTT 730 37 100.0 30 ..................................... GCCTGAACTTAAAGCCATACAAATGGATAT 797 37 100.0 29 ..................................... ATAAAGTGTGAAATTTAGCACTTAAAAAT 863 37 100.0 29 ..................................... GCCCTTTTGCAAGTCCACCTATAGCTGGA 929 37 100.0 29 ..................................... AGCTGACGATAATTTTTATTATAAAAATT 995 37 94.6 29 ..........G.........................A GACAATGATGATTTAATTAAAAGGATTAA 1061 37 91.9 0 ...........C..........C.............A | ========== ====== ====== ====== ===================================== ============================== ================== 9 37 98.5 29 ATTTTACCATATAAACAATTAATAATAGGCTAAAACT # Left flank : CAAATTCTAGTAAAATACGCCTATAAAGTAAAAAAGTATTATTTGATGAAAAAACATTAAAAATGATAGAAATGATGATTCCTACTTACAAAGATGAAATTTCTAATACAAATAAAGAAAATGAGAAAATTAATCAAATGATTAAGCTTGCTATAGAAAAAATGTTTAAAAATGATTTTTTGAATAAAATAAATAATTTTTAATTAAGTTTTTTTATGAATAATGTTTTGTTGCACAGAATAACTGAGAAAGGAAACATTCGCTATTATAGCATAGAAATTATTGCCACTCTATTTGAGGAATATATGGTTGAGAGAGTTTACGGAAATGTGCGTTTTAAAAGTTGTACAGGAAGAAAAAATAATGTATTTCCAAGTTTTAATGAGGCACAAATTTTTTTTGAGAGATTAAAGAAACAAAAAATGAAAAAAGGGTATGCGTAAGTTTTTGCTCAAAAAATAAGAAAAAACATTGATAAAATAGGCTTTTGAGATAAGTCT # Right flank : AAAATTTTTGTAAAATAAAACAATACAAGATTCGGTTATGAGAAATTCATAGCAAAAATACTTTTACAAAAAAAATAGAAAAGATTGGCAAAAAATTAGAAAGGCAAAAAACAAGATTCGCTATAATAAAAAATCCGCTTTAGAGCTGCAACTCTAGCGGAAAATTACAACAAAGGCTAACTATGAAACGACATAGTAAGCGTTTTGTGAGATTATATCTAAATTTTAAGTTTTTTAAGCTTAAAGTTGAAATATTTTTAACAAAACCGTAGCGGCAGAAAAGCCCCTTGCCTTTGTTAGAGTGTGTATAAAGCTACTAATTTACATTCATTTTCCCAAGTCAAATAAAAAAAATCCTATTAAAAGCCTAAAAATAGGTATTTTACAGCAAAAATACTTAACAAAATTCACGAAAATATAGTATAATTATTAAAAATATGAATAAAGTAAGGAAAATTATGCCCACTCTTTTAAAAATCAATGGCTTTAAGTTTTTCTTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATATAAACAATTAATAATAGGCTAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.08%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //