Array 1 278639-276283 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019946.1 Dehalococcoides mccartyi strain KBDCA3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 278638 32 100.0 34 ................................ GGGAGAGCCGTTATACGCGCCATTATTGTTGGGC 278572 32 100.0 34 ................................ GTGGCATCACGTACGATTTTATCAGCGGGTAAAT 278506 32 100.0 31 ................................ AACGTATCCGTGTAGTACTTCTGAATTAAAA 278443 32 100.0 33 ................................ CTTCTTCGGGAGGATGACGCTATACCGTTAGAC 278378 32 100.0 35 ................................ CCTCTACTACTTCTCTCGGTACTCTCACTACACCT 278311 32 100.0 35 ................................ AATAATCTGTGGGCGGTCAGGCCCGCTGGCATGGA 278244 32 100.0 34 ................................ AAAGCTATTTGGGAGTAAAGATATAACCCTAAAC 278178 32 100.0 34 ................................ GGTTTTAGCCCTGCCTGATATATGGCGATATAGT 278112 32 100.0 35 ................................ CATTGCTAAAGGAGACGCTACAAATGATGATCTAA 278045 32 100.0 34 ................................ AGTTCTGTATTTATACCTGCTGTAGCTGTTGGTG 277979 32 100.0 34 ................................ ATCGTGGCAGTCACTCATGAGTTGAAGGTAATCA 277913 32 100.0 35 ................................ TAATTCATATGGATACTGAAATAACCAGAGAATAT 277846 32 100.0 36 ................................ AAACCAGTCCGGAGTAACCATTTGCAGCAGAGGAAC 277778 32 100.0 35 ................................ TCCGCTCTAAACTGACACCTGAACTAAAGGGCAAA 277711 32 100.0 34 ................................ TTAACAGATAAGCAGTCATTTTTTGCTGCCTTAT 277645 32 100.0 35 ................................ TATTTGCGCGAGAAAGAGAGGGCGGGAATGGCGAC 277578 32 100.0 34 ................................ CTATGGATGCGATAACCAGCGTCTCGAACAGATT 277512 32 100.0 34 ................................ TTCGGTTCTTATACTCTCTTGCTATCTGTTCCTT 277446 32 100.0 33 ................................ GTTTAACTGGGTGGTTTCTTCTTTAGTCATGGC 277381 32 100.0 34 ................................ GGCATCAAACGCGGAATAAGCACATACCTTTAGG 277315 32 100.0 35 ................................ TTTTTGACGCCCTGAAGTCGGGCAAGGATATCGTC 277248 32 100.0 36 ................................ CAGTATATCGTGGCGGTCTGGAAGCGCAAAAATCAA 277180 32 100.0 36 ................................ GGTATGAGCATCTTATGGCACAAGCAAAAGGTGTAA 277112 32 100.0 36 ................................ AGGTAGTGAATATACGTGGGTTGAAGATGTTAGCGT 277044 32 100.0 34 ................................ TGTTTATCAGGTTATGCAGCAAGGTATAACACTC 276978 32 100.0 32 ................................ ATCCATAGCTTTGGTTGTTTCTACTGAGGCAG 276914 32 100.0 32 ................................ CCTTCGGTATCGTTGTCATTTGAACACCTCCA 276850 32 100.0 34 ................................ CCCAAAGGTGTTCTGTAACGGAGTAGGTAAGGAA 276784 32 100.0 35 ................................ AAATCAGGGGTATAGTGCATTGGAAAATGATATAA 276717 32 100.0 36 ................................ GAACAAATTAGAGATGCGGCAGATCAAACACCTCCG 276649 32 100.0 35 ................................ CTCGAATTCACCTCATAGCCTACTATAGCCTGTAA 276582 32 100.0 35 ................................ GATTTTTGAAGCCTCCCATCCGGTAAGATTTTTGG 276515 32 100.0 34 ................................ CATTAAGGGCTTCTACAGACGGTACAAACCGTTA 276449 32 100.0 35 ................................ CCCTAATCGTAATCCGGCTAGGAAAGGTAAAAAGA 276382 32 100.0 36 ................................ CATTTAAAACGTCCTGTGGCTATTGATGATAAGGGC 276314 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 36 32 100.0 34 GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Left flank : TGCCTACCCGGCATTCATATATCGCTAAAGCAAGACTGTACCTTAACAACCAAATAAACGATAAAAACAAAACGGAGCAAAACATGCTGGTATTAATAACTTATGATGTAAGTACAGAGACACCCCAAGGGCAAAAACGCCTCCGTCAGGTAGCCAAAATATGCAAAAACTTTGGACAGAGAGTCCAAAAATCAGTTTTTGAATGTCTTCTAGACCCCTTACAGCTGGCCAATATACGCTTCAAACTTCAAGTAACCATAAACCAAGAAGAAGACAGCCTGCGCATATACCATCTAGGCAGCAACTGGAGACCCCGTATAGAACACATGGGTATAAACCGTCCATATGACCCGGAAGGCCCGCTAATCCGCTAAGCCCAAGTGCATAGCTATTCAAACCTTGAGTTAGCGAGCTTTAAATACCTATATAAAAAACTCTTCAAAGCTATGCTAGAAAGATCATATTAAACAACTCTAGCATTATTTAGCTTTGGGTATACT # Right flank : TAGGTATACTAAAGAAGCATATGTTAAAATTATTATAAATATGCTTAACCATAAAACTATGAGGAGAATAAATAGGAGTGCAAAAAATAACTAGTAACCTGCCTCTATCTTACTATATGGAACTAAAGTACCAGATTATTTTAATACCTGACCCCTCTGGCGGATACGTGGCAACAATAGAAGAACTGCCCGGCTGTCTCTCTCAAGGAGACAGTATAGAAGAAGCACTCGATAATATAGCCGAAGCAAAAGAACTATGGCTAGAATGCACATATGAAAATAAACAAGAAATAGAATTGCCCCGCACCAGTGGAAACTTTGAGCGCTATATTATTAGGTATATTTAAAAGGGAAGGGCATATATTGTTCTCCTTAGGAGTGTGAATAAAACTGGTATCTCTAATTAATTAAGGAAAAAGTGGTAAAAAAAGTTCTACCTATTGATACCCTCAGCTCCACCATCCGGTGTCCTGTGTCAATCACAAAACCCTGATTTTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //