Array 1 422826-424318 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWS010000002.1 Salmonella enterica strain 585 NODE_2_length_593181_cov_301.796191, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 422826 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 422887 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 422948 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 423009 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 423070 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 423131 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 423192 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 423253 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 423314 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 423375 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423436 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 423497 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 423558 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 423619 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 423680 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 423741 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 423803 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 423864 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 423925 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 423986 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 424047 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 424108 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 424169 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 424230 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 424291 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440450-442414 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWS010000002.1 Salmonella enterica strain 585 NODE_2_length_593181_cov_301.796191, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 440450 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 440511 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 440572 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 440633 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 440694 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 440755 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 440816 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 440878 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 440939 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 441000 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 441061 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 441122 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 441183 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 441244 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 441305 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 441366 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 441427 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 441488 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 441549 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 441610 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 441671 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 441733 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 441794 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [441836] 441836 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 441897 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 441958 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 442019 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 442080 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 442141 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 442202 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 442263 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 442324 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 442385 29 96.6 0 A............................ | A [442411] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //