Array 1 66941-69183 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXXG01000011.1 Parabacteroides distasonis strain X5 Scaffold11_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 66941 37 100.0 36 ..................................... ACGCTCAACCTCAACGTAAGCGCAAAATATATTATC 67014 37 100.0 34 ..................................... TTTTACTGTACGCTTATCCCGACTAACATATTGG 67085 37 100.0 36 ..................................... TTTATCAATCTCCTTTCTTGTCATTATATTTTACCC 67158 37 100.0 37 ..................................... TTATCTGCCTTAATATTATTTTCATTTAATATACTGT 67232 37 100.0 37 ..................................... GCACCTTGTCTATATCCTTACCTATCATTATATTTGC 67306 37 100.0 37 ..................................... TCAATAATTAAAGATCTTTCCCGTTTAGTCTAGTCCA 67380 37 100.0 38 ..................................... TGCAATGAGATTAAACGTATACCGTTTGATAGGAACGG 67455 37 100.0 38 ..................................... TGCTATTAAACAATCTGCACCAAGATTTTATTGCCCCC 67530 37 100.0 37 ..................................... TTTTCTCACTTGCTTTTTTTACCTCGTTTTGTACTTT 67604 37 100.0 36 ..................................... TATTTCCACCACCTTATCCTCTGATAACTTTGTGTT 67677 37 100.0 35 ..................................... CATTTAGCTATCAGGTTAAATGTATAATTTTTGAT 67749 37 100.0 37 ..................................... CAATCCGGTTGTTGTCCGTCACTTCCGTTTTGTATTT 67823 37 100.0 39 ..................................... TCTTCAGATAACTTTGTATTTTTATCTTGATCTTGATTG 67899 37 100.0 38 ..................................... TATGGAGGCCTTTTGGTGTCCACATATACAAATATAGT 67974 37 100.0 35 ..................................... TGTATTACCAACTCCTTATCCTTGGCCAATGACAC 68046 37 100.0 35 ..................................... ATCTTTCATTATTGTAAATAACGAAATAACCGCTT 68118 37 100.0 37 ..................................... TCTGATAACTTTTTATTTTTATCAGCAAAATTATTAT 68192 37 100.0 37 ..................................... ATAATCTTTGTAATTTTAAAAGTTTGAATTATGTGAA 68266 37 100.0 37 ..................................... ACGTGGTAGTATCTCCTTACATAATTGTATCACTACC 68340 37 100.0 39 ..................................... CGTTTATCATTGCCATTATAAGGGATGTAATACACACCA 68416 37 100.0 34 ..................................... CGCCTTGTCTATTTCTTTGTTTGTCATTAGATTT 68487 37 100.0 36 ..................................... CCAAACAGAATACCCTTGTAAGGGATGTTATTTGTT 68560 37 100.0 38 ..................................... ATATTTTTAATTATATTTTTTACCATATCTTTTTTATG 68635 37 100.0 38 ..................................... TATAGGTTTGCGCACCTATTTTAATTGTTTTTAAAATA 68710 37 100.0 36 ..................................... CCTCCAGGTCTCGGCGGCCAAGGTTGCTGTTGAGCC 68783 37 100.0 34 ..................................... TGTTCGTTCATATCGGTCCTTCTTTCTGTCACAT 68854 37 100.0 37 ..................................... TCCTATCATATCCAAATACCCATATCTTTACAACATC 68928 37 100.0 36 ..................................... TAATACTCCCTTTCTACTTCCTTATATGAGCAGAAG 69001 37 100.0 37 ..................................... GCTTACATCGCTTGCCGCTCCCCCCAGCCAAATTTTT 69075 37 97.3 35 ....................................T GCACTTATTTCCGCTTTGTGTAACTTTTCAAGGTC 69147 37 86.5 0 ....A................T..C........TA.. | ========== ====== ====== ====== ===================================== ======================================= ================== 31 37 99.5 37 GTCAGAGAGGTAGTTCCATTAGAATAAGGATTAAGAC # Left flank : AAGGAATAACTTACGGTTTGTCAAGTGAACAACTTGCGAGTTCCTCTAGCCACTAACTTATGGCTTGGAAAGCTATTTACAGATGGCTTCAAACTATCATTTTGATCGCTTTGATGGTTCTTTATATCGTTGTTTATTATGCGGTTAGATAAAAAATGGAGGATTTGTGAATTGTTTTCTTGAATGCACGTGACTCGCCCTCCGGCAAGGGATTCCGGTTCTTTTTGACGGTCGGCAAGTAACTTAACTTCATCGACCAAGTATCTTAAGATACTTTGCCAACACAACTAAGATACTTGGTCGATGAAGTTAAGTTACTTTGCCAACTAGGGAATTTTGGTGCGGTTGCCCTAATTTAGCTCAAATCGCTCTTTAACTTATTGAAAAAATCACTACCTTCGCAGTCTCTTAAAAACAGGTTAATATTTGTGAATTAAAGAGTGGAAGTATATGAATTTCTAAGATATAGATTTGGAATATATAGGTTTAAGAATTTTGCC # Right flank : CAAATTCACCAAAATCTCGACTTTCCCAAAGAATTGACAATTTGCTATCCAAACCCTTTGAGAATCGAATATTTCGGGGTAAAGTACATCTCGCTTCCAAATTCGCAAGAAAAAAATAGCAATGTACTGTTTATTAACTAGATGCTGAAAAAGCAGTCTTTCATTTGAGCGAAAATAATTCACCCTAATTCCTATCACGGCAGTTGTTTGGACGTTTTTTAGGATCACGGCTGGGTTGTAACAAGGTTAGAATGCTTATTCAAGACTGCTGATAACCCTATTCTTGGCTACTTTCGATGCCCAACGACAGTACTGGCGTGTTCCGAAACGACTACCGGAACACGCTCAAACCACTACTTGTGCACATGAGCCATGCTATTTCTACCCAAAAACGAGCCTTTCGTCTCTCTATTCTCCCTTATTTTATCAATTTGCCACAAAACACTTGTCACAAAACACATCTTTTGGAGAACAAAATGACAATAAATGTTGTAGGATTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGAGGTAGTTCCATTAGAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 138192-139696 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXXG01000001.1 Parabacteroides distasonis strain X5 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 138192 33 97.0 34 ................................G AAGATATTGGCCATAGCTGATGGTCTTAATGACG 138259 33 100.0 34 ................................. TTATCAAGTTTAATTTATTTAATATTTATAATAT 138326 33 100.0 34 ................................. CGATCTGCAATATGTATATCTCACCGTATTGCAC 138393 33 100.0 33 ................................. CTTGTAAGAATTGTTTGCTTCATCTGGTCTTCG 138459 33 97.0 33 ................................A ATAAGTCATATATGTATTTCGGGACAGGGTATC 138525 33 100.0 33 ................................. CGTTAAGGATGATCGCAGCTACCGTACTAGGGC 138591 33 97.0 36 ................................G TCTGGCGACGATGCCCAGATTGGTTCGTCTGGCGAC 138660 33 100.0 33 ................................. TGATCGACTTATACACTTGCCTAATACAATGTA 138726 33 97.0 35 ................................C GACAATGTTATCCATGATCCTTTTGAGGCTTTTGC 138794 33 97.0 35 ................................A TCCCAAGAATAATAGGTAGTATAAGCTTTGCCCTT 138862 33 100.0 35 ................................. CTCTATCACCCTTGACTCAGGATCATTCCATGATC 138930 33 100.0 32 ................................. TTAGTTGCTTTAGCTAAAGACAAAGAAGTAGT 138995 33 97.0 34 ................................C ATTTAAATTGTTGATTATCAATGATATAAACCAA 139062 33 100.0 35 ................................. CATAAACGCTTTGGATACAACGAGCCTATAGAGTT 139130 33 97.0 34 ................................A CAGTAGCAGAGCTATATTCTAAGTATAAACAAGC 139197 33 100.0 32 ................................. ATAAACTTATAACCATCTCTTTCTGTAAGTTC 139262 33 100.0 34 ................................. TGCTCGTGGTGCCGCTGTGGATAATCTAATGAAA 139329 33 100.0 35 ................................. ACTGTAACTAATTTTGTTGGTGGAACATATTGGGA 139397 33 100.0 34 ................................. GTAGACCTCGATGTAATCAAGATTAGGCTTATAG 139464 33 97.0 34 ................................G CTTATGAGTATGGGAAAAATTCCGTTGATGATAA 139531 33 97.0 33 ................................C CGGAGGTTATAGGAACGGCTAGCATGCCCGATT 139597 33 97.0 34 ................................A TAGAATAATTAACATTATCGTAGAAGTAGGGGCA 139664 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ==================================== ================== 23 33 98.6 34 GTCGCACCCCGTGTGGGTGCGTGGATTGAAACT # Left flank : TGATAATTATCCGGTATTTTTAATAAAATAATATACGATTATGTACATTCTTGTGACTTATGATGTAGATACAACGAACAAAGAAGGAGCTCGCCGCCTACGGCATGTGGCTAAGGCTTGCATAGATTATGGCCAAAGGGTACAGAATTCTGTCTTTGAGTGTGAGGTGACAGAAGCACAATATTGTCTCTTGATTGAACGAATCAAGGGTATTATTGATATGTCCCTTGATAGCGTTAGATTTTATATTCTCAATAAAAACGAGAATAAAAGGGTAAAAGTGATAGGTGTTGAAACTGCTTACAAAGTTAATAATGCTCTTATCATATAATTTATGCGAATGTGGAGTATTACGAAAAAAGTAGTATTTTCGCACCCCTTAATAATTAGCAGATTAACCCGTTTATAAGGCGATTGCAGCCATTAAGCTGAAATAAAAATGAGAATTCGCATATTAATAGGTCTAATTTATTGACTTATAATATGTAACTTTATACAGG # Right flank : ATTTGTAAAGCGCAAGCTTTTTCATAAAAGATATACTTACTTACGTGATGAAGTATATCTTCTATGGGACTTGAAGTGTTCTTCTGCGACGAAGAGATTAGTACTTCGTAAAAATAACTTTTTAAAGTCACTGACTCTGACATATAATTTCGCTTAGTTATTTCTGCAAAAATCATTCATATGTAAACAAGTTTCGTATATTCGCGACCTTATAATAGTTTAAATATGGCAGAGGAACTACGGATTAAAAACGGTGATAAACAGGAGATGTATGAGACATTGCTCCCGCAAATCGCCTCATTGGTAGGTAACGAGACCGACCTAATCGCTAACATGGCGAACGTCGTCGCGGCACTCAAGCAGACTTTCGGTTTCTTTTGGGTAGGTTTCTACCGGGTCATAGACAATCAGTTGGTATTAGCGCCTTTTCAAGGCCCTATCGCCTGCACACGAATCAAATACGGAAAAGGGGTATGCGGCACGGCCTGGAAGGAGACCCA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGTGTGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 261578-262053 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXXG01000001.1 Parabacteroides distasonis strain X5 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 261578 36 100.0 24 .................................... ATCAAAAGGTCGTTCTACAGGGTG 261638 36 100.0 27 .................................... AGTATGGGACAAAGTAAATGACGTTAA 261701 36 100.0 27 .................................... ATGCTCGGAGTTATGCAGTCCAATGCT 261764 36 100.0 29 .................................... AAAAGGCCTCATATCCTCACGGACGGAGA 261829 36 100.0 27 .................................... AGGGACAGGTTCCGTTTGATACATTCT 261892 36 100.0 28 .................................... GTTAGTGCTTATGGTGAGAAATTGGCTT 261956 36 100.0 26 .................................... TTTGAAAACAGCGTATAAGAACCAAT 262018 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 8 36 100.0 27 GGCTATAAGCCTTGTATAATTTCTACTATTGTAGAT # Left flank : GATTTTCAAAGATGCTTACCAAACATGGAGCCATCCGACTACAAAACTCAGTATATGAGATAAATAACACAAATCGGGTAATAGATAATATGATTACGATAATAGAGGAAACTTTTGCAAAGAAGTTTGGAGGTGGCGACAGCGTGATCATTTTTGATGTCTCTACGGTAAAGTTAAAGAAATATGGCAATGCCATTCATCGTGATACGGATATCGTATATTTTTGATTGGTCTAACGAGTTGAGGATGTAAATTAAACTGTGTTAGCAAAGTTAATATTTTATTTTACTCTTTGCTGACACAGTTTATTTTACACTACCAATGAGTTTACAAACCTCAGTCTTTACATGCTCTAAGGGCAATCGTTTGTTCTTTGTGTATGAGTATTTTATGCATTTTTATAGACCGTAGAGAATACAGAACCCTCTTATTTATCTTTTTATTTCCCTCATGTAATTATTTGGTTAATAAAAAAATAATCGTACCTTTACAATACAAGA # Right flank : TAAATACACACGGATCGTCCAAGGCTTCCACACCCCAATTTTTTATTTCGCCTAAGAGAACAAAAGCCGAAACAAACAGAAACAAATATTTCTTGAACCTTATGGAAAAGTCCTTACAATAATATACTTCATTCAACGACAGAGAATGATCGTTCAGTGGCACCAGACAAAAAAAGCACACTTATCTTTCAAGGAATAAAACAGTTACAGCACAAGAACACGAACGAATCCTTAAGACTATCGACAATAACTGAGTCAGCGGAAATATCTGATGCATACATATATTTCACCAGCATAGGCACAAACCATAAGCACTAGTACTTAGCGTCCACACTGATAGAGCTTACGGCCCATGCCTATAGAGGCATTCTGCAACACCGATACTCATATAAATGGGATCACTTTTAATGTGTTTAACATGTTATATGTACCAAATATTTCCGCTGCTCCATTAACCATCAGTAGAAAATCTATTCAACAAAAAGAATATAATCTTGGCT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTATAAGCCTTGTATAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //