Array 1 436-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGDI01000282.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 435 35 100.0 33 ................................... CACAAACCGCCGATAGTGAATGGACTAAGCAGT 367 35 100.0 36 ................................... ATATGATAATCGACTGGGAATGTGCTAGATACACTA 296 35 100.0 36 ................................... TCAAGTCACTTCCGAGGGTGCGCAACTGATTGATGT 225 35 100.0 35 ................................... AAAAAACTTTTCCCGGCTAAATAACAGAATTATTC 155 35 100.0 40 ................................... TTTCTCAGAAACTTGGGTGATGCAAAATCATCTGGATTTG 80 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 6 35 100.0 36 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAACTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAATAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : TTCTGGCTGATGATGTCTTTTACAGTGTTCGGTTAATGTCTTAATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 53-716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGDI01000730.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.747, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 53 35 100.0 33 ................................... AAAGAACTTTGACAGCAGAAGGAAAAGACATGA 121 35 100.0 35 ................................... TCAGGGATTTGAATGAAGACCCTCACAGCTATAAT 191 35 100.0 37 ................................... GAAACCGCAATGGCACAGTATCCCGGACAGGTTTTGT 263 35 100.0 38 ................................... AATTCTTTACAATGACAAAATCGTCACTTTAGATGAAA 336 35 100.0 35 ................................... ACCAATGGGGACGTACAGTGAATAAAATCGCCAAT 406 35 100.0 30 ................................... TTCATCCCTAGTAAAATCAGTACAGCTAAA 471 35 100.0 35 ................................... TTGAAGAAACAGGCAAGTTGCGAACATGAGTTTCT 541 35 100.0 35 ................................... AACGATATCCAGAGCGACATACAGCTCAATGGAAT 611 35 100.0 36 ................................... TAAAAGCATTAGCGACAAAGATTGGAAGTGACAAAT 682 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 10 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : GGAATACATCTACATGCCAACTAAGAGTTACTTTTGACAGCAAAGGGAATGTG # Right flank : ATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTGCATTATGTCAAAGAACGAATTGCTTATTTGTTTTTTTTCGCAAATGATTTACTAATATACAAAAAAGCTAGTTCTTTCGTAGCTTTTATACATTATATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 20657-19729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGDI01000298.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.306, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 20656 29 100.0 35 ............................. ATCAAGTGGTCAGCCTTAAATCTGTTGCAAAAGGA 20592 29 100.0 35 ............................. AGCTGAAGGCTACCACCTCCAAGTTCGCCACTACC 20528 29 100.0 35 ............................. TATTTATAACTCGGTTTATTGCATGGATTCCCGCA 20464 29 96.6 36 .....................T....... TTTCATTATCCTTTGGTGAACTTTTTGATTTTCACT 20399 29 100.0 36 ............................. CGGCATACCAGTATGTACCCTTCATCCCTTACCTCC 20334 29 100.0 34 ............................. CAAGTCTGTGGGAAGACCGTACATAACTACGTGC 20271 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 20208 29 100.0 37 ............................. GTATATCCTTATTGTTATACTCGTCAAGCATTGCAGG 20142 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 20077 29 96.6 34 .....................T....... TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 20014 29 100.0 36 ............................. TGTATACATATAGAACATAATAATGCTTGTATCCGC 19949 29 100.0 34 ............................. CTGAGTATTTCGACTTGTATTTCTTTGAATTCCA 19886 29 100.0 34 ............................. TAGCTAATGGAAATTCTACAGACGTGTCTTCTTT 19823 29 100.0 36 ............................. TTCGTCATACTCTGAAACAGAGCGACACCATTTCTT 19758 29 93.1 0 .........................G.C. | A [19734] ========== ====== ====== ====== ============================= ===================================== ================== 15 29 99.1 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : AAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAG # Right flank : AAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGATTTTTTTCTTCTTTGCTAGCAACATCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTATGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //