Array 1 67319-66630 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPGN010000024.1 Parabacteroides merdae strain 1001270H_150608_G12 NODE_24_length_67385_cov_32.067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 67318 32 100.0 33 ................................ GATATTTGGACGTCAGAACCCATACTCCGCTTT 67253 32 100.0 34 ................................ ATCCGGCACTTCAATACCAAGAATACGCTTAATA 67187 32 100.0 33 ................................ TTAATAACCGTCGCTTCGATCTCGAATGCGAAG 67122 32 100.0 33 ................................ AAGAACACAGTCTGACTTTTATAAGGTTCAGAT 67057 32 100.0 36 ................................ AGATAGGTACGGCTCAAATGATAATGAAGGAACATG 66989 32 100.0 33 ................................ GGTGTTATTTTGAACGATAACATACAAATGAAA 66924 32 100.0 33 ................................ AAATCCTGTTTCTTTATCTGACACACAGGCGAC 66859 32 100.0 34 ................................ CGTTATATGTTTTATAACATATAGTCGGTTGTTG 66793 32 100.0 34 ................................ AATGGACGAGCCGTTGAAAGAGCTGTCATACTTG 66727 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 66661 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 98.6 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : ACGGGTGCCTGCTGACACCCGTCTAAAATGGGCTACCCTAAAATTGGAAACTTACAAGCCGATCAT # Right flank : GAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAAT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2745-87 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPGN010000021.1 Parabacteroides merdae strain 1001270H_150608_G12 NODE_21_length_82468_cov_33.2083, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2744 32 100.0 33 ................................ CTTAAGGTAAATAGGCTGATAACCGATATGATC 2679 32 100.0 33 ................................ TTAGAGGTATCCGCCTTAATATTTTTAGTCTCG 2614 32 100.0 33 ................................ ATAACCAAATCCGTTTTTAGGTAAATGTTCGGG 2549 32 100.0 33 ................................ ATTTTTAGGCAGGTATTCGGGATTATACGTAAG 2484 32 100.0 34 ................................ CGTGACAGAGAAAACATTATTAACACTGCCAGGT 2418 32 100.0 35 ................................ ATTTATAGCCTGTTTTATCTGTAAAGTAGTGTACG 2351 32 100.0 33 ................................ TATGCTGGCTGCTGGATATGATGGTGCTGCTGC 2286 32 100.0 34 ................................ TTGCAGGTCCTATTATGGCTACCCCTACTATGAT 2220 32 100.0 34 ................................ TTGTTGGAATATAGAAATATACAAGCCGATCATC 2154 32 100.0 32 ................................ TTGGTATTGAAGTGCCGGACGAATTTCAACTT 2090 32 100.0 34 ................................ TTTTGAAAGGGAAGCGTACGATAACGAATGGGAC 2024 32 100.0 33 ................................ AAACTCGTTTTTAAATACTTTTTCTTTTCCGTT 1959 32 100.0 34 ................................ CAGGAACTTTTTAAAAACGAAAAACCTGGTGTAT 1893 32 100.0 33 ................................ GGAGATAACCTTCTCTGCCTTCCGCATAGAGAT 1828 32 100.0 34 ................................ TTTTGAAAGGGAAGCGTACGATAACGAATGGGAC 1762 32 100.0 33 ................................ AAACTCGTTTTTAAATACTTTTTCTTTTCCGTT 1697 32 100.0 34 ................................ CAGGAACTTTTTAAAAACGAAAAACCTGGTGTAT 1631 32 100.0 33 ................................ GGAGATAACCTTCTCTGCCTTCCGCATAGAGAT 1566 32 100.0 34 ................................ TTTTGAAAGGGAAGCGTACGATAACGAATGGGAC 1500 32 100.0 34 ................................ TTGCAAGCAGCCAAAAGAGAGCTGTTTGAAGAAA 1434 32 100.0 35 ................................ CTAATGGAAATCCGCGTTACGCAATTGCTTACAAA 1367 32 100.0 33 ................................ TCCTTCCGGTTGTGGTGTAGGCTGGACAACTGG 1302 32 100.0 33 ................................ CTTACGGACGATACAAAGTTGTTGTAAATATGT 1237 32 100.0 34 ................................ TATGATCGTAAAGGGTAACGTTATCCCAACTTAT 1171 32 100.0 35 ................................ TATGCTTTCCTCGTCACAAAAAACAGATATACTAC 1104 32 100.0 33 ................................ GTGAAACAGATGCTAAAGTTAATCTCTCCGAAG 1039 32 100.0 32 ................................ TTGCCAACCGTTTGAATCAGTTGGTCGTTTAT 975 32 100.0 34 ................................ ATTGAGAATCAGAATTGGCAGTTGCAAGAGCAAA 909 32 100.0 33 ................................ ATGTACGAAAAGTATAATATCAAGTTCCACAAG 844 32 100.0 34 ................................ CAAAATTGAGAAGCCTGACGAACAGCAAGATATA 778 32 100.0 33 ................................ TTTTTATCCTTCGCAGGCTTTAGTCGAATCTGG 713 32 100.0 36 ................................ AACCTCAATCATTTAAATAATGGCTAACGTATTTAA 645 32 100.0 32 ................................ CTAAAAATAAACATGGTTATGAAACACTTCGA 581 32 100.0 33 ................................ CTTATATTGATTAAGCGGACAGGTTCGACATTT 516 32 100.0 34 ................................ AGACAAAGCACCACCTTCGGAAAATGATTTACCG 450 32 100.0 35 ................................ ATTTACAACAAAAGATTTAAGCAAGCAAATGACTG 383 32 100.0 34 ................................ AGGGAGTTTGGTTGTGAGATTATTGTAATAAACA 317 32 100.0 35 ................................ CCGTAAACTCTTGCTATCTCAAACTCTGCCATGTT 250 32 100.0 34 ................................ TAAAAGACATTCATTGCCCTCAAAAGGAATGCAA 184 32 100.0 34 ................................ TATGAGCAGGCAAAGAATTTGTTTTTGCGGAAAG 118 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 41 32 100.0 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : CTTGTTGGAATATAGAAATATACAAGCCGATCGTAAACTTCCAAAATTGGCGTATTGACTAGTATGGCTCTTTCCCGTACCTTCGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 13272-8425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPGN010000021.1 Parabacteroides merdae strain 1001270H_150608_G12 NODE_21_length_82468_cov_33.2083, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 13271 32 100.0 36 ................................ GTCTCATAAGTAGTAAGACCTACAAGAGGAGCAATA 13203 32 100.0 35 ................................ TGCATCGAGAAAGTTACCGTACAGGACGGCAAGAA 13136 32 100.0 35 ................................ TGAGCATCAGTGAGACGGATATTAGCTTGTTTTAA 13069 32 100.0 34 ................................ ACGACGGCGAGCCTGCATAATACGACGTTTAGAA 13003 32 100.0 35 ................................ TGGTCTCTTTGGCTCTATTGGAGCTGGTAGACGCC 12936 32 100.0 34 ................................ TTTTAATCCTGAATTTGATCACATTGGCTATCAA 12870 32 100.0 33 ................................ TTTGATAAACAAGATCATACATGCCGGCACCAC 12805 32 100.0 34 ................................ TCTCTTGATAGAAGCGTTTTCTATCCTCACTTCC 12739 32 100.0 33 ................................ AATTTCTTAAAATAGAGTTTTCCATGAAAGAAC 12674 32 100.0 33 ................................ ATCAGTTGAAACACGCTTTACAGATACACGATA 12609 32 100.0 34 ................................ AAATTACCGTCAGGAAGAACACCAGCATCATTAA 12543 32 100.0 34 ................................ AATATCAGAGGGAGTAATCGACAAACCAGAAACG 12477 32 100.0 34 ................................ TGTAACGCAGAATCCGCATTTTGTCCAAACTGAT 12411 32 100.0 32 ................................ ACCCTTACACGAGCGGTAGGGTTTTCTTTCTT 12347 32 100.0 34 ................................ CTGTGGGGAAGTACGATCATAAAACCTATTACAA 12281 32 100.0 33 ................................ AGCAGGAAAAGTTTGAAGATGTAGAATACATAG 12216 32 100.0 39 ................................ CAATCTATATATATTATATATAATATATATAGGAAAAAT 12145 32 100.0 33 ................................ CAATATCAAGGAACTGAACCGCCTTTTGAAAGA 12080 32 100.0 33 ................................ TTTTGAGCCTGACAATCGCTTAAACCTTTCCAG 12015 32 100.0 33 ................................ TTAGTACGATAAACAACGTAGCAAGTAGGAGCA 11950 32 100.0 35 ................................ GACATTAAAGCAATTATCCTTAGAAGGTAAAGAAA 11883 32 100.0 35 ................................ AAAATGATAAGAATTTATTGTGATAATGAAAACTG 11816 32 100.0 35 ................................ ATTGAAGATAAGTTTAAGGACGAAGAAAAGGTTGA 11749 32 100.0 32 ................................ AATGATAAATGATCTGAATAAAATCAATGAAA 11685 32 100.0 36 ................................ GGACATGAGAACTTCGTGATTTACAAAAGCGTATTA 11617 32 100.0 33 ................................ GTATCTGTTTCTTCCGGTGTTTCACCTTCAAGA 11552 32 100.0 35 ................................ TCAACCTCTCTCTGCGCTGCACTAAGATAAGTTCT 11485 32 100.0 34 ................................ CCGTCTACAGTCAGCTTTAGTTCATTGCCTTTTA 11419 32 100.0 34 ................................ CTAAATATTGTATGGCATGGCAAGGACAGATCAT 11353 32 100.0 35 ................................ ATTTGAAGTAACTGGAGAGGCTACGTTTACGCAGA 11286 32 100.0 35 ................................ CTCTATAAATAAATCTAAGTTTTAATAAAGGAGGA 11219 32 100.0 34 ................................ TCTAAATCACTTGATTTGGCAAAAGGCTTTAATG 11153 32 100.0 35 ................................ TTGTACTTGCTTTGTACTAATTCCCTTTGCTTTCA 11086 32 100.0 34 ................................ ATGTACCTTCCAGAGTGTTTGCGATTGTGTTTGC 11020 32 100.0 34 ................................ CTAAAAATGAACATGGCTATGAAACACTTCGAAA 10954 32 100.0 34 ................................ CAAATCATCAGAACGAGACATCTGCTGTAATTTG 10888 32 100.0 33 ................................ CAAGCCATCCTACCAGCTTACCATCCATCTTCA 10823 32 100.0 34 ................................ ATCCTATTTAAAATCTAAAGAATATGAGACAGTT 10757 32 100.0 33 ................................ GTAGCCGAGAACAGTATTTGAAAACTCGTGTTG 10692 32 100.0 33 ................................ TTAATGGTAAAAAGACATATAATCGTTGGATAA 10627 32 100.0 33 ................................ AGGATTTTGGGAGAAAAGTTGTGTTTGACAGTT 10562 32 100.0 33 ................................ CGGTGATGCCCATGGTGAACCTTTTGCTGCTGA 10497 32 100.0 33 ................................ TTTGTTTCCGCGAGCATTTTCGCATAGGCAGCA 10432 32 100.0 32 ................................ GTCAATCTGGAAGTAAGACCATGCTTTTTGTA 10368 32 100.0 36 ................................ AAACGAAAATCTAACACGATAATTGGTGTCAGATAC 10300 32 100.0 33 ................................ CCTTACAAGCGAGGAAGGAGTAAAAGGATTTAC 10235 32 100.0 33 ................................ ATGCGTTGGCAATGGTACTTTTGGAAGGGGAGG 10170 32 100.0 35 ................................ ATGGGATTGACAGGGCAGGTAACAGACCCAGCAAT 10103 32 100.0 36 ................................ ATGCGTAACAGGATTTTCCATGATCTGCCCTTGCCA 10035 32 100.0 35 ................................ CTACTCACGTCAATAAAAAAATTAAGCGGAAGTGC 9968 32 100.0 34 ................................ TCAATGAAACACGGAGTTAAAAGAGCAATCGTCT 9902 32 100.0 34 ................................ AACATACCTGTTAGCGCAAGAGGAACTCTTACAG 9836 32 100.0 32 ................................ TTGATTTTGCGAAACACATAAGAAGCATATAC 9772 32 100.0 33 ................................ ATCTTTTCATCCTCATAGACACTCAAAGAAAGT 9707 32 100.0 34 ................................ AAAATGTGACTCTCTTGCATTTGAGAAGATAGGA 9641 32 100.0 34 ................................ ATCCTTTCGAGCACGAATGTAGGCAGAACCAATA 9575 32 100.0 32 ................................ TTGCGAGAGCGCAGGAGTTTTTTCGCAATGCC 9511 32 100.0 34 ................................ GCTGCGCTATCTCGCGTGTGGCGAGTACGGCTCT 9445 32 100.0 33 ................................ CATGATTATCAATATTTTATATTATATTCAATC 9380 32 100.0 33 ................................ ATTTTTATTGGTTTAGGGTACGCGCGTCCATTG 9315 32 100.0 33 ................................ AAGGTGCTGCTTATGCGAAGACTCTTGCCGAGA 9250 32 100.0 32 ................................ TTACTTTCGCCGTCGAGAACAGTATTTGAAAA 9186 32 100.0 35 ................................ CGTGCGTATGAGGCTATATATAACGCTTATATTCG 9119 32 100.0 34 ................................ TGTGACGAGGAGAGCATAGTAATGGGTATTATGT 9053 32 100.0 33 ................................ AAGGCGTCGTAACGAACATTAACATCAAAACGA 8988 32 100.0 34 ................................ TCCTTCTTACGCTCAAATTGAGCTTAATTGGCTT 8922 32 100.0 34 ................................ AACAGGATCAAAAGTATGATGACGCTCAGCGTAT 8856 32 100.0 35 ................................ CCCGACCAAGCATGGACAGTCACCGGCAAAACCAA 8789 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 8725 32 100.0 34 ................................ ATTGCCCTCAAAAGGAATACAATAATCCCATAAT 8659 32 100.0 35 ................................ GAAATCAACCTTATAAGCATTACCGTCCTCGTCAA 8592 32 100.0 33 ................................ TTACCAGAGTGCAGGAGTTTTTTCGCAATGCCA 8527 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 8456 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 74 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //