Array 1 305774-306932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQD010000002.1 Listeria seeligeri strain FSL L7-1630 NODE_2_length_312383_cov_26.886406, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 305774 36 100.0 30 .................................... TCTTTTGGATAATCCTCTAATTTGGCAATA 305840 36 100.0 31 .................................... CATTCTTCCGCTTTGTCGCTAGTGTAGGTGA 305907 36 100.0 30 .................................... TTCGCTTCCGGCACGGCCACATAAATGTAA 305973 36 100.0 30 .................................... TATGGAACCAACTATCGCCTATCGTTTCTA 306039 36 100.0 30 .................................... CAAACTTTTTTATTTCTTTTTCTGTGAATC 306105 36 100.0 30 .................................... TAAGAAGGGGATTAGGTAAATACATATATT 306171 36 100.0 30 .................................... AGAAGATTACTTACAAAAAAGCATTCTTCC 306237 36 100.0 30 .................................... ACGGACGGTGTAGGTTTTGTCAGTGATACC 306303 36 100.0 30 .................................... TTTTGATATCCCGGAGACTATCGACAAAGA 306369 36 100.0 30 .................................... TACCCGGAATTGGAGAATTTGGGTCATCAT 306435 36 100.0 30 .................................... CATGCTGATGTTTGGACTGATACGGAAGTA 306501 36 100.0 30 .................................... TTCGTATAGATTAATTGCATCGGAGTCCAA 306567 36 100.0 30 .................................... TATGGAAGAGGAATTTATTCATGAGGAAAG 306633 36 100.0 30 .................................... CGTCGAATTTGTCATTATTCGGTCGTCGAA 306699 36 100.0 30 .................................... CTCTTCTTTCACTTTCTTCACTTGTCTGCA 306765 36 100.0 30 .................................... AGTGAACATGATGTAGAAGTGAACGTCTTG 306831 36 100.0 30 .................................... AATTTAGCAAACTTTTTGGCTTTGACCATT 306897 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAACTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGACTCGAATGCTCTTTGAAAATAAAATATATTTTAGTTAAACCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAAATATCCTTTACATCTATTTTTTTCTATATCTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTTGCTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAATGCCAAAAGCGCAGTAATGGCAAAACATGCGCATCCGATTATTCCTAAAATATGACCAATAATAGAAATCCCGGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTGCATAAAAGAAAGCACCGACTCCGCTTGTTTCTGATCCATCTCCGCCTGAGAAACTTTCACTGAAAGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 128116-128723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQD010000005.1 Listeria seeligeri strain FSL L7-1630 NODE_5_length_209259_cov_22.121019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 128116 29 100.0 36 ............................. GGGGGACTATAAATATCTTTGGGCAGACCCGGCAAC 128181 29 100.0 36 ............................. ACAGCTGCACTAACAGCAATAATAATCTTTCTTTTT 128246 29 100.0 34 ............................. GATGAAAACGAGGATGAAGATGGTGGAGATGAGG 128309 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 128373 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 128437 29 96.6 37 ..........................G.. GTAACAAAGCTATAACGGAAGATTTAAATGAATTACG 128503 29 100.0 34 ............................. TACTGTAACTCATAAAACTTTCTTCTTGTAATTT 128566 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 128630 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 128695 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.3 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGA # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATCTCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 134958-136803 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQD010000005.1 Listeria seeligeri strain FSL L7-1630 NODE_5_length_209259_cov_22.121019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 134958 29 100.0 35 ............................. ACACGAAACAACCGTGTCGGCGCCTCACCACGAGC 135022 29 100.0 35 ............................. AGAAGTGACGACTTATATGTCTTATAACCCCCCTC 135086 29 100.0 35 ............................. GTCTGTTAATTTGTTTAAATATTCGTCTGTATAAC 135150 29 100.0 35 ............................. ACACAGGATGGCAAAGCGATAGATTTGTACAATTC 135214 29 100.0 36 ............................. ACGGTAATAATCACTATCATTCTTCTTGTATTTCTC 135279 29 100.0 38 ............................. AATTAATTCGTCCCCGCGATCATCAACGTGACCGCTTG 135346 29 100.0 36 ............................. TTGCTTCGAATTCTAATTCCTCTTGATTTTTTTTGA 135411 29 100.0 38 ............................. AAGAACGTCCCTGCATCATCTTCACTTTGAAGAGTGTA 135478 29 100.0 36 ............................. TGACCATTTACAAGCGCATCCATTTTGGGTGATACT 135543 29 100.0 37 ............................. ATTCCAGAGTGATAGCATTTCAAACTGAAAGGAGTTG 135609 29 100.0 36 ............................. TAATGAGTGCGATGTTTTCGGTGCGGTTGACTTCGC 135674 29 100.0 37 ............................. CAGCCGAGGTCGTTTTATAAGGGTCCATTTTCTGACG 135740 29 100.0 36 ............................. AAATGGTGCTTTTGAGGCAAAATATCGACGTAAACC 135805 29 100.0 35 ............................. ATAAAGGAAGTTCAAGTACTTCAAAAAGTAGTGGA 135869 29 100.0 35 ............................. TTTTTTCATTAAGTATCTCACAATAAACAAATGTA 135933 29 100.0 37 ............................. AACGATTTTATGAGCAGATCGAGAATTTTTTTCTCTG 135999 29 100.0 36 ............................. ACATTTTGCTGAAGGTGGAGACGATAAGAATTTTAC 136064 29 100.0 36 ............................. GGACAAATAATTATTGGAACGACTAAAAACGCAGAT 136129 29 100.0 37 ............................. TGCGTAAGTATTTCCTTCTGTATAGCCGCCAAGCTCC 136195 29 100.0 36 ............................. TAACTACTAGCAACCTGTACATGGTTACCGCCAGAG 136260 29 100.0 35 ............................. AAGTTTTTCCGGTTTTCAGCAACGATGACTCCGAA 136324 29 100.0 37 ............................. ATACTTAACGTTTGCTACCTTGCCCTCTCTTGTACGC 136390 29 100.0 35 ............................. GAAATAAACGAGAGTAATCTACCGTTCTAAGCAAT 136454 29 100.0 37 ............................. TCCTACAAGTCGCACGCCATTTAAGTAAACCTGCAGG 136520 29 100.0 34 ............................. CTAATCTGAGAATACTAAAACGAGCTTGTTCCGC 136583 29 100.0 36 ............................. AATGTAATGACTTTGAGGATTTCATAAGGAAAGAGG 136648 29 100.0 34 ............................. AAGGTATTTATAGTCCCCCTCCACCGCCGTCCCA 136711 29 100.0 34 ............................. AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 136774 29 86.2 0 ........C....C..A...........G | T [136800] ========== ====== ====== ====== ============================= ====================================== ================== 29 29 99.5 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACCCCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGCATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGATTTTGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCAAGTAGCACTATCATAAATTTTTCAGTCAAAAAAATTAAAAATCAAATTCTATACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAAATTCAATAAATCATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACTGAGGGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACGGGAATTGAGAAATCTAGTCCAGAAAGATATAAAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 145406-147687 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQD010000005.1 Listeria seeligeri strain FSL L7-1630 NODE_5_length_209259_cov_22.121019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 145406 29 100.0 35 ............................. CGATTTATATAAGGGATGCGGGAAATATACATTTC 145470 29 100.0 35 ............................. AACAGCTCCAGCTAGGTAATCCCATCCGTAATCAA 145534 29 100.0 34 ............................. AACCAAAACGTCCGAATCTTGTTTCTTTCACTTC 145597 29 100.0 37 ............................. CTGCATGAGAATTATCCTTTTTCTTTGCTCCAATTGC 145663 29 100.0 37 ............................. AGGATTATTTGTTGTTCTTTAGCAGATTTTGATAGCG 145729 29 100.0 37 ............................. AGTGGATTGTCGTTTATTAAACTCTTTTTCACTTATT 145795 29 100.0 37 ............................. CTCGCTGATGGACAGGGCATGATATTACAAGTTAAGG 145861 29 100.0 36 ............................. TTATCAGATGTAGTAATGACCTGTTTTGCCCCTTCG 145926 29 100.0 37 ............................. TTTTCAAAATAACTGTTTTTTGTTCATCTTGTTTCTT 145992 29 100.0 34 ............................. TCCCATATGTGAAATGGAATGATTTTGATGACTT 146055 29 100.0 36 ............................. ACGACAAACAAGGAACAGCGAATTATTTGCGATAGT 146120 29 100.0 34 ............................. CCAGCTTGCCTTTTCAACCAGTTTTCCGTTTTCA 146183 29 100.0 35 ............................. TTCAACGCCAGCCCAAGCCGTTTCAAAGTTTGCTG 146247 29 100.0 34 ............................. ATTAAATGGTACGGCGGTGCCGACTTGGCAAAAC 146310 29 100.0 35 ............................. CACTAAAAGGTGGATTCTTAGTCGCACTTAATGCA 146374 29 100.0 34 ............................. TGAGTCAACTATTAGGGAAGTAAATCCGGAATTG 146437 29 100.0 36 ............................. AGTGTTCAGTTATTTCTTCATACATAGCTAGTAACG 146502 29 100.0 34 ............................. GCATTATGCAGTTAGCCATTCTAGTAATTTTGTT 146565 29 100.0 35 ............................. AAGCAAAAGACAATTTGGAGAATTTAGTCTTAAAA 146629 29 100.0 36 ............................. AAACAAAAAAGCATGATCGCAAATGCGGATACTAGT 146694 29 100.0 35 ............................. ACTTGTATCTGGGCGTTGTTCGGGATTTAACTGAA 146758 29 100.0 35 ............................. ATTGGAACTGGTGGTATTGTAGCGGAGAATTACGA 146822 29 100.0 34 ............................. ATATTGTATTTTCATGTTTTGTCATTTGTTTAAC 146885 29 100.0 37 ............................. CTTGTTATTTTGTTTACCAAATCTTTATTGTTAGCAT 146951 29 100.0 35 ............................. ACGATTCTCCTTAACTTAGATATAAAATCTAATAA 147015 29 100.0 34 ............................. ATGGTTCACTTAGCAAAGGTACACTCGTGACCAA 147078 29 100.0 35 ............................. TTATTTGATGTTGAATCATTATTGTTTGTTTTATT 147142 29 100.0 36 ............................. ATTAGAGGATTAAATGAATCTTTTACATGAATTGTT 147207 29 100.0 35 ............................. TACAAAGCCCGAACAATCCGTCATCCCGCTTTTGT 147271 29 100.0 34 ............................. ATTTCTTCATAAAGTAAGGGACTACTTGTATCTG 147334 29 100.0 34 ............................. AGCAAAGAAATGATGGAATTAAAAATTCATCCTT 147397 29 100.0 38 ............................. ACACTTCATTTACTTCTGCCTGACTAACGCGAGCTGCG 147464 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 147529 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 147594 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 147659 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 36 29 98.6 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGGTATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAATACTGGAGATCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACAGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGCGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //