Array 1 58379-60754 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALAR010000005.1 Citrobacter freundii strain M-21-X3 NODE_5_length_314370_cov_122.097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58379 28 100.0 32 ............................ GTTTACGGCTATCAGGAATCCGTGCAGGAAGC 58439 28 100.0 32 ............................ CGGCTCCATGAGCTGAAGCGCGAGAAGGACGT 58499 28 100.0 32 ............................ ACCATTTCTGACCGCCAACCGCCAGGCGGTTT 58559 28 100.0 32 ............................ GGCGTCGCCGTTGGCGAACCCAGGCATATCAG 58619 28 100.0 33 ............................ CGAAATATTGAGCATCAAGGACTCGCCATGCGA 58680 28 100.0 32 ............................ TTGAGGGCCAGCAGCATCGTGGCGACCAATAG 58740 28 100.0 32 ............................ GCGCTCAGTTCGGCGACGACAGCCCCGAAGCC 58800 28 100.0 32 ............................ GAACTCATTGAGCTGAAGCTGATTCACTGAGC 58860 28 100.0 32 ............................ TGGCTTTCGCGCTGGCCGCTTCATCCGGACGT 58920 28 100.0 32 ............................ GCAGCGCATTGACTGGGATTACGCAATAAACC 58980 28 100.0 32 ............................ ATTCAAGGGCGGCGTCGGTAGTTGAAACCGCA 59040 28 100.0 32 ............................ GTGCGCGCTTTTACATCAGCACTACGACGGTC 59100 28 100.0 32 ............................ ATAAGCTCTTCATCAAGCGGGCCATATTTACG 59160 28 100.0 33 ............................ CTGGCTGGGTAATCAGCCTGACGGGAAAAAACT 59221 28 100.0 32 ............................ AATTGCGGAAGGGGTGATTGCTGTCACCAGCG 59281 28 100.0 33 ............................ TTCAGCACTAACCTGTCGCCGGCGCTCTGCCAG 59342 28 100.0 32 ............................ AGTCTGGGCCGACTCTTTAAGGGGCTGAAACT 59402 28 100.0 32 ............................ GATTGTAGTTCCCTGCCTGATTGTTGCATTAC 59462 28 100.0 33 ............................ ACGAGCGCAACACTCATTGCAATCATTACATTT 59523 28 100.0 32 ............................ TCCGGGGCGTTTCCGGTAATCTTGCAGGCCAT 59583 28 100.0 32 ............................ AATGACTGGATACACCCAAAAAATGGGTAAGG 59643 28 100.0 33 ............................ TTTGTAGACACCGCGCCAATAGTGGTGATAGAT 59704 28 100.0 33 ............................ GATTCGGTCAGGCCTGAAGGAAAAAACTCGCAA 59765 28 100.0 32 ............................ TCCTGATCATCGACGAAGCACACCTGCGCCGC 59825 28 100.0 32 ............................ AACGCCGTTGAGAATGTTTTGTGCCGGAATGC 59885 28 100.0 32 ............................ ACGCCCGTCGCGCACGTCCTGACCGGCAAAAA 59945 28 100.0 32 ............................ GCTTGACGTGGCCGTACCCGTGACAGCGATGC 60005 28 96.4 32 ....G....................... TTTTCCAAAATCGCGAATTGTCGGCGCGACAG 60065 28 100.0 32 ............................ CATCACGCGCACAAACTCCCGCATATTTTGCA 60125 28 100.0 32 ............................ AAGCGGCCCGAAAATCTCAGTCGCGCGCATAA 60185 28 100.0 32 ............................ GTGCAGCGAGCGGTTGCCGGAAACGGACGGTA 60245 28 100.0 32 ............................ ATTCGGTCACATTCGGCACAGTGTTGGCTGCA 60305 28 100.0 32 ............................ TCCCAGAACGGCAAACGGTACCCCTCTGAATT 60365 28 96.4 32 ......C..................... ATTGTGCAGCGCGGCTTCCTGCTCCGTGCGAC 60425 28 96.4 33 ......C..................... TTCCATGTCGTGTTCGTTGAGGGTTGCGCCGCC 60486 28 100.0 32 ............................ ACAAACCCAAGTCCAGGGTAAGTCTGGTGATT 60546 28 100.0 32 ............................ GTTGCTCAGGACGCAGCTTGCGCCTGCCTGAC 60606 28 100.0 33 ............................ GTACAAAGACCACATCCTGAAAGGTTCGAATGC 60667 28 100.0 32 ............................ GCGCGCACTGTCGCATGGCGAGTCCTCGATGC 60727 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAATATGCGAAGCCTGTCTACGGGGCAATGTTTTCGATTGTTTGTATGTCACGGAGAAATACAGCCAAAGCCAATTGCTGGTGAATTTTCAAGCTATGGTTTAAGCCCGACGGCAACAGTCCCGTGGTTTTAAACTGTTCAACCGCACCTGTTGTTTGGGTGCGGTTCCACAAATAAGCCCAATTTAACTCTCAGAAATTTTGTACTTTTTTAGAGCGAGTACGGTAGTTATTTAATCAACAGGTCTTTTTCACTCTTCTTTGGCAGCTCACTTTTTATCTTATTATTTCGCCATGTTGTAAAAGCAAAGCCCTATTAAAACCCTGCACACAGGCGCTGTGCTTCATCCGTTCACCCCTCAATTTACGCTAACCCTTTTTTTATCACTATTTATAACCTATTGTTTTTTAATATTAATTATGAATGGTTAAAAATAGGGTATTTTGCGTTATTTTCTAAATTTTTTATATAAAACAAAGTGATTGGTTGATAAGATTCGA # Right flank : ATGAAAAACCTATCGTAATTGGATTGCTCATAATCTTCACTGCCGTACAAAGAGATAGCTATAGCTATCGTCCCCGGGGGGATGGAAATTCCGAAAAGCGTTGGCGCGACGGGGATAAACGGCCTGACGCAGTAATATGCCAGGATGCAAAAAAATAAATCCCCAACCCGCTTTAGCGTGGTGTTGTCTGATGTTAAAAACGCCCTGGTTAGAGCGCCACCAATCATGATGCAAATTATGCGGAACGCCTCCGGGGGATTCGTAAACAGCATCAATAATACTTCTGATAACGTATTCTTATACGGCATCATCTATCCAATAAGTTTGTAGGTAGGCCGTCAGCCACGATGGCTACGTGGTATAGGATATTTTGGCAATAAAAATGCCCGCGCGAGGCGGGCAATGATTGCAACCCGGCGAACCGGGAAATGTAAATAAAAAGCCCCGGCACCCGCCGGGGCTAGTTTAAAGTTTAGGGTTTAAAGTCCGCTTTCAGCAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //