Array 1 2464-2792 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPB01000082.1 Methanosarcina mazei strain 3.F.A.1A.3 scaffold97_1_size16465-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2464 37 59.5 36 TGGTCTCC.TCTTTA.A.................... TTAAGATGACCAGCGATCACAGTTTTCGTCTCTGCC 2537 37 78.4 35 .G..G...GT.GCT.....G................. CTATTTCCCTATACCTTTCTCACTCAAAACCATTA G [2546] 2610 37 100.0 35 ..................................... TCAGAAAGTTCCTGCATCGAGTCTACCCATGCATT 2682 37 86.5 37 ....GC..G...................A.......T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC 2756 37 81.1 0 ....G.T.A.........T........A.....T..T | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 81.1 36 ATTCAAGATCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ATAGGTCAAACAATTAGAGCAATAAGATATCATTTAGGTGAGTTAGAAGCATGTTGGTTACTGTGTACAAGAGAAACAAAAGAGAGTGAAGAGCTAATAAATTACTTTATAAGAAAATTCTCTAAGAAAACGGTAGACATCCAATCAATCGAATTAATAAATTCTTCAAAAATTGGTGATACTTTTAAACAAATAAATGAGATATATATAGAAAAAATAAAAGGAGTTGGTTTAAAAGAAGGAGAGGTCATAGCAGATTTGACAGGAGGAACCGCGGTTACGAGCTGTGCGATGGTTCTTGCCTGTGTACCTATAAAAAGAGACATGGAATATGTTCTTCAAAGTACATATGATCTAATAAAAATAAAAGAAAATATCTCTGAAATAGTATTTGATAGATAATTGTTAAACAGTTAAGTTCGAAGTTGCTTAGAATTGGCTAAAAATAAGAAAGATAACTCTTTAAGAAATAGTTGCCACGAAATAAATAGTGAGATGCT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAGAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTGCAATCAATGAATGTTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.05, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAGATCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.18%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5157-12919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPB01000021.1 Methanosarcina mazei strain 3.F.A.1A.3 scaffold85_1_size13020-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5157 37 94.6 36 .....T............T.................. TACTCTGTAAAAATCCCCCCTTTTGGAGCGAAAGCC 5230 37 94.6 36 .....T............T.................. TAATCTATCGAAAATGAGGTTTTCCATGAATCTGGT 5303 37 94.6 36 .....T............T.................. ATAAAGGTAACAATTGGGGGATTTACTTAGAGCTGT 5376 37 94.6 36 .....T............T.................. AATTGTTTCTCAGCGCATTCCCGCGCTTTTCTGATA 5449 37 94.6 35 .....T............T.................. TTCATTGTTAATTCTCCCGCGCAGGATCATATCAG 5521 37 94.6 35 .....T............T.................. TCCCCCCATAAGAATTTCTTAGTTTCAGGAAATTC 5593 37 94.6 38 .....T............T.................. TGACCGAGTAGTGTACGAGTATTTGTAAAAAAAATATG 5668 37 94.6 36 .....T............T.................. CCAAGCCTGATTATGAGGTAAACTGGCATCACCGGC 5741 37 94.6 39 .....T............T.................. ATAGATGCGGATCGAAGTCTTCTACTTTTATTACTTTCG 5817 37 94.6 35 .....T............T.................. TTTGCAGGCTGATAATAGTGGCGGTGCAAGTATGC 5889 37 94.6 38 .....T............T.................. ATCAGAAAACGCTTTTATTACGCGGGTTTTCAGATCGT 5964 37 94.6 37 .....T............T.................. CTCGGCTTTCACTCGGGCGCAAAAATACCCCTATATG 6038 37 94.6 35 .....T............T.................. CCGGGAATGTGACGGTCAGGGAATACGGCATTTTC 6110 37 94.6 38 .....T............T.................. ATGACGATCGAGAAGTAATGCTTACTATTCCTGAACAG 6185 37 94.6 35 .....T............T.................. TTGAGAAAAGTGAGTTGATTAAGGTATTATCAAAT 6257 37 94.6 36 .....T............T.................. TGCCGTCCTTTTTCGGGACAATATGAACAACGTGGT 6330 37 94.6 37 .....T............T.................. ACACACGAAAATGTTGTGCCGATTGATAATCCCTGCT 6404 37 94.6 33 .....T............T.................. AGATCGCTGCCTGTTCAAAATCATCGAGATCAT 6474 37 94.6 35 .....T............T.................. CTTATTAAATTGAGGAGAATTACCACTACTGTACC 6546 37 94.6 37 .....T............T.................. ATGTGCATGTTCGGGCTTGCTTTTCATGCTAATATAC 6620 37 94.6 37 .....T............T.................. ATAAGGTATGCAGCAAAGTCGTATTCTGTTTTTGAGA 6694 37 94.6 38 .....T............T.................. TTCCACGACCTGCCGGAGGGTATCGGAACCCGGTTTGA 6769 37 94.6 37 .....T............T.................. GGAATTTTCAAAAGCTCATCTATATTCGTGAATCCCG 6843 37 94.6 34 .....T............T.................. GCAAGTGTAAAAAGGGAGTGGCTAATCAGTTTCG 6914 37 94.6 36 .....T............T.................. TACCACCAGTTTCAACATTTTGGTTCGAACCGCAAA 6987 37 94.6 35 .....T............T.................. CTATACGGATATCATCAAATGACGCAGGAGAAATA 7059 37 94.6 36 .....T............T.................. CCCGGAAGGCTCCCTGCATGACCACAGGGACGATGA 7132 37 94.6 34 .....T............T.................. CATCCACGAAAGAAGCTTCAGAAGGTACGTATCA 7203 37 94.6 36 .....T............T.................. CTGTCGATATATACGGGAAAAAAACGGCTACCACTA 7276 37 94.6 35 .....T............T.................. AGCTTATATTCCTCGTATTCACATCCCCATTTCTC 7348 37 94.6 36 .....T............T.................. CATGAGGGAAGCGGACGAGGTTAAATATCTGAATGG 7421 37 97.3 34 .....T............................... TTAAAGCTGACCATGCATTATCAAGTTCTGTTTG 7492 37 97.3 38 .....T............................... GAAAATTGTTTTCATACTTCCTAACTGATTCTTAATCT 7567 37 97.3 36 .....T............................... CTAGTATAAAAAAGTTTTGAGTAGAGAAGACTTAAT 7640 37 97.3 37 .....T............................... ATTTCTCCACCCTGTAACGTTGTTGCACCTGCAAATT 7714 37 97.3 37 .....T............................... ATGTCTTAAATCGCCTTAGATTTGTTCGTACTTATTA 7788 37 97.3 34 .....T............................... TTAAAGCTGACCATGCATTATCAAGTTCTGTTTG 7859 37 97.3 38 .....T............................... GAAAATTGTTTTCATACTTCCTAACTGATTCTTAATCT 7934 37 97.3 35 .....T............................... ACCTCATTGCAGATAAATGATTTAGCCCTGTAGAG 8006 37 97.3 37 .....T............................... GGGTATGAAATTGACCAGGAAATCCACAATGTTGTTG 8080 37 97.3 38 .....T............................... TTTATAGAATTACATACATAAGTGAGTGTAGCGAACGT 8155 37 97.3 35 .....T............................... TAACAGTCCTCTATCTGGTTGTTTTCAAAAATCGT 8227 37 97.3 36 .....T............................... TAAAAAATACACTCGAATGCATCAAATTATACTGAG 8300 37 97.3 36 .....T............................... TGGTGGAAAGGAAGTTGCAAAAAAACTTGGAATTGG 8373 37 97.3 36 .....T............................... GCTACGATTTCACTATACAATTCCTCTACAGTCTGC 8446 37 97.3 33 .....T............................... TTATGATGAGTGTGAGACAAAAACGGATACTGC 8516 37 100.0 35 ..................................... ATTTATTACTTCCCATTCCTCAGAAAACAGTTCAA 8588 37 100.0 38 ..................................... TAAACCAGTCCCGCGATTACAAGCATCGAAATGATACA 8663 37 100.0 36 ..................................... CGAAGTTAAATGATGGTGGGTTGAAGTTTGACGGTG 8736 37 100.0 37 ..................................... TCCATATGCCCCATCTGTGCGCATATAATCGCATATT 8810 37 100.0 34 ..................................... CTACACTCTGTGCGTTTGCGCTTGTTAAATTCGC 8881 37 100.0 37 ..................................... AGATACGCTGCCCAAGAAGCCCCACCTGCCCCTGCAG 8955 37 100.0 37 ..................................... AAATCTATACTAACCCAGCCACACTTTAGCCCTGCAG 9029 37 100.0 37 ..................................... AAATCTATACTAACCCAGCCACACTTTAGCCCTGCAG 9103 37 100.0 37 ..................................... TAAGCTACTATTTTACCTTGTCTGACTAAATCTGCAT 9177 37 100.0 35 ..................................... TTCAATGATCTCTACTTTTGCCGGGAAAGATTCGT 9249 37 100.0 36 ..................................... AAAAGCGACTTGCATATACTACAGAGCCGGTTCCGG 9322 37 100.0 36 ..................................... TAATTTCATCATGCCCACAGGTTGCAATGGTGTCAA 9395 37 100.0 35 ..................................... TGGCCTCGATCTCTGCTGTAGACCCCTTTTCCTCT 9467 37 100.0 38 ..................................... TAACCGGCATACAGAGCCATTATTAATTGTACCAAAAA 9542 37 100.0 33 ..................................... CAGGGGCGAATTCGTCTTTTACCGTCGGGACAA 9612 37 100.0 36 ..................................... TGCAAGTAAATTACGGTGGAAGTGTTGCAGTTTCTA 9685 37 100.0 34 ..................................... TGACTGAGAGACAGAGGAACGAAATTAGAAAAAG 9756 37 100.0 35 ..................................... GGATTTATCAAGGCGTTAACAGATACAATATCCAT 9828 37 100.0 37 ..................................... TTAATTTCGCGTATATCGTCTATAAAACTTTTCACAT 9902 37 100.0 37 ..................................... AAGGTTTATCTTTTTCCTCAATGTTTCAAAATGTTTT 9976 37 100.0 37 ..................................... TCCTTGGCTACTTCAAATTCAGTTTGTAGTTTATTAA 10050 37 100.0 37 ..................................... AAAACGTTATCCCACTTTTCTTTGGTGATTCCATAGG 10124 37 100.0 38 ..................................... TCAATCACACATTCTTTAAAGTCTTCTATCGTAACTTT 10199 37 100.0 36 ..................................... TAAAGTTAGATGTACGTGGCGCATAAGATACACTTC 10272 37 100.0 36 ..................................... GTTTTATAGTTGTTACTACTATAATAATCACCTCTA 10345 37 100.0 38 ..................................... TTCATTCCTCGAAGCTACAAACACAACAAATCTAAATT 10420 37 100.0 36 ..................................... CCTCGCTCTTGCCGGATGGGACGTAAATGAAATCAT 10493 37 100.0 37 ..................................... AAAACTCCTGCTTCAATCTGTTCGGGGGTTGCTACGT 10567 37 100.0 38 ..................................... CCTCGTTTCTTTTTTTTGAAAATCCCAGATTATGACGT 10642 37 100.0 34 ..................................... TTCTCAGGGAGCGCGGAGGCACAGCGAGAAGACC 10713 37 100.0 34 ..................................... TTAAGAAGTCTGAACCTGTGGAGCAGTTGAAAAA 10784 37 100.0 33 ..................................... AAATTGGCGATTTCTTTAGAGTTAAAGGTAAGA 10854 37 100.0 37 ..................................... ACATAGTCATACATGCTGTCATAGAGGTTCACGTATC 10928 37 100.0 34 ..................................... TAGCTATCTTAGCTATCTTTTCGGCTCGTTGGAA 10999 37 100.0 36 ..................................... CATTCAACGATATTTACAAGCCTAGTGTAATCCCCT 11072 37 100.0 35 ..................................... AACCTTCTACAAGATAATCCAGCCACATTTTTTTA 11144 37 100.0 34 ..................................... CCACCTTGTAGGTAATAATCTTTCCGATTACTAC 11215 37 100.0 35 ..................................... TTCCAAGAGCCGTGTAACTGCATGTTGCGGCTTTC 11287 37 100.0 33 ..................................... TCCCTCCTTAAGTTGTCACCGTTCCGAGTCCAA 11357 37 100.0 36 ..................................... TTAAAAAAATGTTCTTTCTTGCAAATCCGGTTAACT 11430 37 100.0 37 ..................................... GTTCTCCTGATTCGTTATCTATGCGATGTAATACACA 11504 37 100.0 37 ..................................... TTATGGTGATCCAGAGAAGGATATTCCGGCGAAAGAG 11578 37 100.0 36 ..................................... TATTCATGCTTCAACTTCCTGCGTTCCCTTGCTCCA 11651 37 100.0 36 ..................................... ACCCTGGGTCTTCTGAATGGTACTGGACAGGTTCAG 11724 37 100.0 36 ..................................... GCATCATCGTTTCCGGACCCGAGAGATATGATATCC 11797 37 100.0 36 ..................................... TTCACCATATTTGATAAAAATACGTTAGTATGTTAA 11870 37 100.0 37 ..................................... ATGCCAGTGTTGCAGCTTCCGTGCGGGTTTGTGTTGA 11944 37 100.0 36 ..................................... AAACACAATTGAAGTTATTCCTATCGCTATATTCTA 12017 37 100.0 37 ..................................... CAGGAAAAGGTATCCGAAATACAGGTATTACAGGTAG 12091 37 100.0 33 ..................................... CATAACAAATTCGATATTCATCTCTCGATACTT 12161 37 100.0 34 ..................................... TGATAGGCATATAATTGATGTTTTGATAGAAAAG 12232 37 100.0 34 ..................................... TATAGAATTGTAATTGCAACAGACGATGAAACAC 12303 37 100.0 37 ..................................... TCCGTTATTGCCTCGTTTTTACCAATTATCCCTTTTA 12377 37 100.0 36 ..................................... AGATCGTACTGTAACTGCTTTACCAAATCGTCAAGG 12450 37 100.0 34 ..................................... AATTACCTATATTTCCACTCCAAAATCTGGTCTA 12521 37 97.3 35 .....T............................... AAGTGGATACATGCCCCACATGACCCCATTGAACC 12593 37 97.3 34 .....T............................... TTTCGACTTCCCATCTCCTGCTCCTGATGTCAAA 12664 37 97.3 36 .....T............................... CGGGACTCTGAGGTGATCAAGAATGACAAATGCACT 12737 37 97.3 36 .....T............................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 12810 37 81.1 34 GG...A...T.GCT....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA A [12815] 12882 37 81.1 0 .G...A...T.GCT......................G | A [12889] ========== ====== ====== ====== ===================================== ======================================= ================== 107 37 97.6 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GGAGAGGAATTGCAGGGATGAGGGATAAACTGATCCACAACTATTTCGGTGTGGATTCCAGTGCTGTATGGGATACCGTAAAAGAGGATATTCCTTCTCTCAAAGAAGAAATCATTAAAATTATTCAGGACCTTAATGAGAACGTTTAGTTTTTTTAATTTTGTCAACCGATCTATTATTATGAGTACAAGAAAAACATTCGTGAAGTTCCGGAATATTGCCCCTCTTTCTGATCCTGCCCAGGGGCGGAAAATCCCTCCTCGCTCCCAATATAAAACCATATTTCACGGTAGATCTGAAAAAGAGTATGTACAAATATACAAATCAAAAACAAAAGTTTAATAAAAAGAAAATCATATGTCCATATGTTTCTAAATTACTAAAAACCCTGTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTCCCAGCAAGAATTTTAGCCTCGAAAAAGGGCACATTTCCGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAA # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 9418-13756 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPB01000099.1 Methanosarcina mazei strain 3.F.A.1A.3 scaffold35_1_size40213-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================ ================== 9418 30 100.0 37 .............................. ATGATTGGCTTGGGGTTGGTGGCTTTGTCGAACTCGG 9485 30 100.0 35 .............................. TCAAACTGAGGGTGAGCTTCAGCACGCCTCATAAA 9550 30 100.0 38 .............................. CTTGCAAAAGAAATAAACAGAATGATTGGCGTAGAATG 9618 30 100.0 39 .............................. AAGATAATGATTACAGGTGTGTACGATACGCAAAAGAGA 9687 30 100.0 35 .............................. AGTTCAACGATCTCTCCACATGAAGGACATTTATG 9752 30 100.0 36 .............................. TCGTATGACTGCCTTGAATACCGTTCAACGTCATCC 9818 30 100.0 37 .............................. AATTTCAGTCGGATTTGTTTTAGTATTTTTTCACATG 9885 30 100.0 35 .............................. TTGTTATTTTTTTAAGGGGGTCTTTCAACTTCATT 9950 30 100.0 35 .............................. TTTTTGTTGCACAGAATGAACAATATCCCTGGATG 10015 30 100.0 38 .............................. ATCGCCGCCAGGGTTTGCCCAGGAAGTATTTTTCTCTC 10083 30 100.0 38 .............................. AAATCTTCAAATTCCTCCCTCAAGCGGACGTACCGAAA 10151 30 100.0 36 .............................. ATAGAGTGAGAGGGTTGCCTTTTCGATTTTCGCGCC 10217 30 100.0 36 .............................. TCATTGAGAAAGTGGTTAAATCTGCCGGAACATCCG 10283 30 100.0 38 .............................. AATTGCCGAAATAGTGGAGGTAATCATTTCTTTGTTAT 10351 30 100.0 32 .............................. ATTGGAAAAATTAAACAGGAAATAGCAGAACG 10413 30 100.0 36 .............................. CTTAATAAGCCCCCTGCCTGCGTCCCCTCGTCCTTA 10479 30 100.0 35 .............................. ATTGAATACAACAACTGGATAAGTGCGGCTTACTC 10544 30 100.0 36 .............................. GTTTATCGCCTTTGATGAACTTACTCAATTTTCGGA 10610 30 100.0 36 .............................. GTTTTCTGGTATTCGGGGGTTTTCGGGTCAGTCTGG 10676 30 100.0 38 .............................. GAGAATACCGGATAGAAGATAATTCAATAACCGAGAAA 10744 30 100.0 37 .............................. TCTATCACGTAATAAGTTCCCGACTGCGTTTCTGAAA 10811 30 100.0 35 .............................. CTGACCTGGTCAGGGGATAGAACAACAAAAGCCTC 10876 30 100.0 35 .............................. CTTTGATACTGCTGCGCCCCTGACAAGCGTGTAAT 10941 30 100.0 38 .............................. TTGGATTAATAGGAGAAGGCGCACCAATCCAAGTACAA 11009 30 100.0 36 .............................. TCCATAATACCAAAAAGTACATTATTTGACATTGAA 11075 30 100.0 39 .............................. ACAAAAGCATATAAAGCAGCTCATTTTGCTGCTTTTAAT 11144 30 100.0 46 .............................. ACATAATTGTAATGCTAGAATCTGTGACAAAGATTGTATACGGCTT 11220 30 100.0 40 .............................. TAAGTTTTTTATAATACTCAAGTGCGTAATCACAAATACA 11290 30 100.0 34 .............................. ATATACTAGACCCCTATATGCATACCAAACGCGG 11354 30 100.0 36 .............................. TTATATTGTGATTTACCAGATACCCAAGGGGACCGT 11420 30 100.0 36 .............................. CATTTAAAACTCATTGTTTTGGCTCCTTTGAACTTT 11486 30 100.0 36 .............................. TTTAATTGGTACGCTAAACAGGCGGACGTTGGAAAC 11552 30 100.0 36 .............................. GGTCCTCCGCGTTGAATCTTTGCGGGAATAGAGGTT 11618 30 100.0 36 .............................. AACAGCACCCCGTACCCTCTGCAATTATCGAATACG 11684 30 100.0 36 .............................. CTTGCAGGTACTAGAGCGGGGTTGATCGGGGTGAAG 11750 30 100.0 35 .............................. TAGTTATTCCACGCGCGGGCATCTGAGCCGCCGTC 11815 30 100.0 37 .............................. GTAGCTGATTCCTTCGAGATTACTGCCGATTTTGAAA 11882 30 100.0 38 .............................. TTTCTTCGGGTCATACTGCTTCATTGGTTCGGTCTGAC 11950 30 100.0 34 .............................. TGATCACATCATCTTCATTGAAAAATCCTTCATA 12014 30 100.0 36 .............................. GTTGTTCGCTTCGGGAGCAGTTGCAGCCGTCCAGCT 12080 30 100.0 37 .............................. TCAGGATATATAAGTATTATTTTTCCGTCCTCATTAC 12147 30 100.0 36 .............................. GTGATAGATTTCTATCTGTTTCGATTCTTGGATACT 12213 30 100.0 37 .............................. ACTATCCAGATCCCAGGACCCCAGGTTGAGACAATGT 12280 30 100.0 35 .............................. GTTCCGGCTGAAGCAATGCCCACCGAAAAAAGGAA 12345 30 100.0 35 .............................. TCTTCTTCTTCAGGGTCTTCGGCTGAAATGAGAGG 12410 30 100.0 36 .............................. TTGTCATGCTATAACCTCCTGAGCATAAGCTCCCTT 12476 30 100.0 39 .............................. GTCCGAGTGGATTGATCTGGGCCTCGTAGTTATCCAATC 12545 30 100.0 38 .............................. TGTGCTTTCTGTTGGAATTTCGGTGACATTTTCAGGGA 12613 30 100.0 35 .............................. TAGAACAAATGGCAGCCCCCGCAACACTTAACCCG 12678 30 100.0 36 .............................. CTAAGAAAAGAATACTCCGTCAGTGTTTTGAAAAGG 12744 30 100.0 36 .............................. ATCGGTGATTTCTTCTATAGCCTGAGAGTAGAGTTT 12810 30 100.0 38 .............................. TCCTTTGCGACAAAAGGTTTAGTCAGACTTATTTCAAA 12878 30 100.0 36 .............................. GAGAAAATGTTTCCTCGAGCCTCAACCGCGTATTTG 12944 30 100.0 35 .............................. CTAATATCTCAATTCGTGGTTGCCATATCCATGAC 13009 30 100.0 36 .............................. GGATCTTTCTCCGTGAGTGCCGGGTTGTCCTCCAGG 13075 30 100.0 34 .............................. TGACCTGAATTCTCCCTGAATTAACTTTAATATC 13139 30 100.0 36 .............................. CTTTAAATCCGGTAAAGGCCCGATGTGGCAGGCCGG 13205 30 100.0 37 .............................. TCCTTTGTACCTATGATAACGGATTAAACCGCCACAT 13272 30 100.0 37 .............................. AAATTCAGAAGCCAGGGTTACTGTTGGAGTCAAGAAA 13339 30 100.0 36 .............................. CTAAAAACTCCTCTTCTGACATCACCTCTCTTATTT 13405 30 100.0 35 .............................. ACTGATCCTTCCAATTTTGATGAGGTAAAATTAGT 13470 30 100.0 34 .............................. ATTGAACTATTACGGCATTTTGAAGGACAGGAGG 13534 30 100.0 36 .............................. AGGAATACACCGGATAAACTGCCTGCAATGAATACA 13600 30 100.0 96 .............................. GTGCTTAGGAAAACCCTTGTATATAAACATCTTTAAATTTGTGGGAGAAAAATTAATAAAAGGAAATTAAAAAGTTATATACTATTAGAAAAATGT 13726 30 80.0 0 AA..T.....CT.................A | G [13728] ========== ====== ====== ====== ============================== ================================================================================================ ================== 65 30 99.7 37 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : TATGAACTGGGTCCAAAATAGTGTTTTTGAAGGCGAACTCACAAGAGCCGAATTCGCAAAAGTTAAATCAAGGCTTAAAGAACTCATTGAAGAAAAATCTGATCACATCATTTTCTACAGCTCAAGAGATCGGAAATATCTTGGAATAGAAAATCTCGGAACCCCAAAAGCAGATACAAGCAATATCATTTAATTGCCTCGTCCATGAGTTTCATTACTTAGATCTTCATACTAGAATTAACACTTAATTTATATATTTCTCCCGTCTGCCTTTTTTGCAGTTCCTGTTTCTCCTCTTTTTTCGTGGATCTTTATATATGAACCTCCTGAAGCACGATCCCCGAAATCAGCTCTTAAAACCCTCTTAAAAAAAGAATGCTTTTATATCAACAGTGAACAAATACCATTGAATAAAAACAGTATCATTCCCCCGAATTATTTATCACCCATCTGACAGGATCAGGCATCCAATTTGCCTAAATTCGGGGAAAATTTCCTTG # Right flank : ATTTGGAGTTCGTAATTTCAATTTATTAATAAGACCTTTTAGGGATCATTTATTTTTTTTACATTTTATTTGGGAAATAATGACTTACCGTTTGGAGTTCGCAATTAGGAAAGATTTATCTATTTGAAATGCTTTATACTCTATAACTCATTAAGAAAAACGGGAAATGTAAATACAAAATTTAAATAATAGTCAGGGAACAAGTTATGGATCAAACAAATCCCGTTGAATTGACATTATTGTTTTTGAGAATACTGGAATTTCTGCAACAAAAAGCCTATATCCGAAAGACGGACAAAAAAACAATCCTTGGTAATGGAAAGAAAGTTATCTGGAGGTTAAATATTGATATATCAGTATACAGGGAACCCGTTCGTCGATAATGGTATGTGGGCAATTTGCGAATGGGCAGAAAAGAAAGACCCAAAGGAACTTGGAATTGAGGACATAAAGGAAAGTATTTCCGATATTATTCCAATTTATTTAACAGAATCTTGGGG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 16114-6843 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPB01000085.1 Methanosarcina mazei strain 3.F.A.1A.3 scaffold9_1_size76778-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 16113 37 100.0 36 ..................................... AGAGTACATTTTCTAACGTTCTCACCTTTGAGAATC 16040 37 100.0 37 ..................................... ACACTATAAAATCAGCCGGAACGAAAGCTAAAGTATC 15966 37 100.0 35 ..................................... CAAAGTCCCCCGTAGGATGTACGAATCTTGGAAAG 15894 37 100.0 35 ..................................... CTTCTCGATCGTCATTAAAGGGATCTTCGCAAATG 15822 37 100.0 35 ..................................... AGAAAGTAAAATGCTTATCCAGCCGTACCTGAATA 15750 37 100.0 34 ..................................... CAGCCGGATACACTGTTACAGGCTCCGTTTCCGA 15679 37 100.0 34 ..................................... TTACGCCCTGGGAGATTTCGTATTTATCAACTAC 15608 37 100.0 35 ..................................... TATACTGCATCCGAAACAATGTTAATAAGAATTGA 15536 37 100.0 35 ..................................... TTCCAAGATCCAAAACTAGACCCGGCTGATACCGG 15464 37 100.0 36 ..................................... TTTTATACCCTGGAAATGGGCTGATCTACTACGGGC 15391 37 100.0 34 ..................................... CACTGTTGGAAGAACTTGTCAAACAAGGAATTCT 15320 37 100.0 37 ..................................... TTAACACCGTACCGCTCAGCCCTGAAGTTCAGGTCAG 15246 37 100.0 35 ..................................... GTGATTGCTGTAACTGAGGGGAACCACACTGTTGC 15174 37 100.0 38 ..................................... CAAACTCTTCAGAGCCATCAGGATAGATTCTAAGCACT 15099 37 100.0 37 ..................................... CATATATGCATTCCTAACCCATGCCATAACAAAAACT 15025 37 100.0 35 ..................................... TGGCTTTTGCGCTCGTTGGAGGAACTACCCAACCT 14953 37 100.0 38 ..................................... TCCAGACCGGTTGAGACATAGGGGTGGCAGACGGAAAG 14878 37 100.0 41 ..................................... TTGAGTATGTTAAGGGCTGCTGTTCTTACGTTGTTGAACTG 14800 37 100.0 39 ..................................... TTTATCAGACTTGCGACCCGGCGACCTCCACAAAATCCA 14724 37 100.0 35 ..................................... AGAACTCGGAGCAGGCAAGAAGCAAAACATACCGA 14652 37 100.0 36 ..................................... TTTAGTACTGTTCTGCCTTCCGTTTGTGTTCATTTG 14579 37 100.0 35 ..................................... TCAATAAAATTATCTTGTCCTCTGTGACCTCTCCT 14507 37 100.0 36 ..................................... AAAATATCAGTATTGTTAGTACCCTTCCTATAGGGT 14434 37 100.0 38 ..................................... ATACAGGCTTGTTAGAATTACTCAGGTTTGACTTATTT 14359 37 100.0 35 ..................................... GCCGTGACTTCGATAAGCTTCTCATAAATTGCGGC 14287 37 100.0 35 ..................................... ATGCGATCCGCCAAAAGAGAAAGCTGTTCAGGAAT 14215 37 100.0 34 ..................................... GCGTCTGTTGTATTTTCATTTGCAAATGTGACGG 14144 37 100.0 35 ..................................... CGGTCCAATTTGGATCAGGAACCGAAACTCTAATC 14072 37 100.0 37 ..................................... ACCCGTTGTTAGTCTGATACTACATGGACATTTAGGC 13998 37 100.0 35 ..................................... ACAGATTAACATATTCAGATTCAAGAGCATCAACT 13926 37 100.0 37 ..................................... TGGACAGGGAGCGGGTTTTTTGCAGGGAGGTTGTAAT 13852 37 100.0 34 ..................................... TGTGCAGACGGGATAATCTGAAGACGCTCATCAT 13781 37 100.0 35 ..................................... TGTTAAAATTCCTTCTGAAGAATTGAACGGGGCTT 13709 37 100.0 36 ..................................... TTAAAGCGTTTGTGAAGGTGAGCTAATGATTGAAAC 13636 37 100.0 36 ..................................... ACACTCGCGAGCAGGGAATATCCATTCCCTAGATCC 13563 37 100.0 36 ..................................... GAATTTTCAGGACTCACTTTCGATGGAAATTACAAT 13490 37 100.0 36 ..................................... CCTAATAAGTTCCAAGCTTTATCAAGTCTGTTTCTG 13417 37 100.0 37 ..................................... CATCCTGTGAATTCAGGAAGCAGTCTTGAAGCAAGAA 13343 37 100.0 35 ..................................... CATGAGCTTCCAAGGCGCGGGATGGTCGAAACCTG 13271 37 100.0 35 ..................................... ACACTTACTTCAAGCAGTGCCGACACTTCCGCGAA 13199 37 100.0 33 ..................................... GCCCCGATCTCCTGAAGAAGAGGCTGGATATTT 13129 37 100.0 35 ..................................... CTTCGTGATACCGTTTCCCCATCAAAAAAGAATTA 13057 37 100.0 34 ..................................... TGCGATTCCACAGACTCAGTGAAACCCATGTCAA 12986 37 100.0 38 ..................................... ATTATACCCCCCATATATACACGCGTATTATCAGAATT 12911 37 100.0 36 ..................................... TCAAATCAGAGCATTATAAACAGTGAAAATAATAAT 12838 37 100.0 34 ..................................... AATACTTCTGCTGAAAAACATGTTATTTTTTGAG 12767 37 100.0 37 ..................................... TTGAGTCGATATCTTCCCAAAATGTCTTTCCATTGTT 12693 37 100.0 35 ..................................... CTCACCCAGTTCTTCAACTACTCCGGAACTTGACA 12621 37 100.0 37 ..................................... TCTATTATTTCCTCTTGCATCATTCCACCCCTAACAC 12547 37 100.0 35 ..................................... CTATTACAGAATCTCCTTTTGGCGGGCTGAAAGGT 12475 37 100.0 36 ..................................... TATAGCACGGGTATCGGCAACAACTAAACTCTGTAA 12402 37 100.0 35 ..................................... CTGCTTGTAAGATGAGTTCGTTTACCATTGTTTTA 12330 37 100.0 35 ..................................... AGAAACTCAAAATCTGCGTTTTCGGCTGTGATGCA 12258 37 100.0 36 ..................................... TCTCTGCTTCGTTCTTTTCATATGCTTTTTCTGCTT 12185 37 100.0 35 ..................................... ACGCATTGTGTTAGCATCACAGACTTAAAATTATC 12113 37 100.0 35 ..................................... CAGTTAATTTTTCATTATTGATTCAATGAACAGGA 12041 37 100.0 35 ..................................... ATGATACGTGGGTTCAGTGCATGGTAATCGGCAGG 11969 37 100.0 35 ..................................... GGAGTCTGGCATCTATCCACTTCTCAGATGTTCTC 11897 37 100.0 35 ..................................... CTCGGTAACAATATCAAAAACGCTATCAGTGATGT 11825 37 100.0 34 ..................................... CTTATATATGAATTCGGTTTTAACCTTCGTTTCC 11754 37 100.0 34 ..................................... CATTAGCTTTTCAATTAACTTCTCATTTGCCTTA 11683 37 100.0 34 ..................................... ATTCAAGAAGCTCTTTTTTCATGGTTTGGATTGA 11612 37 100.0 37 ..................................... ATAAACTAAACACAGAAACGATTCTAGTAGACGGAAT 11538 37 97.3 35 .....A............................... TACAGTGCTTCAATAGGTCCGGTCATTTTCTTATG 11466 37 97.3 34 .....A............................... TTCAAGCTCCGCGTTAACGGTTCCGCGTCCTACT 11395 37 97.3 36 .....A............................... AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 11322 37 97.3 35 .....A............................... TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 11250 37 97.3 35 .....A............................... AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 11178 37 97.3 35 .....A............................... TCGGAATCGGCTTCATTGCCCGGATAAGAGTGAGT 11106 37 97.3 34 .....A............................... TTTATAATGTACCAGATCCATTCTGGCTGAATTA 11035 37 97.3 37 .....A............................... TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 10961 37 97.3 35 .....A............................... CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 10889 37 97.3 38 .....A............................... TATTCAATACCTAGATTAACTGTATGATCCCTGTGACT 10814 37 97.3 37 .....A............................... TCAAGACTGTCAAGCGCATTATTAGCCTCTTTGAATG 10740 37 97.3 33 .....A............................... AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAA 10670 37 97.3 35 .....A............................... AAAAGCTTGCAGACTTCTCTGCTTCAGACTTAGTT 10598 37 97.3 35 .....A............................... AAATCTGCAATCGCTCAAGAATTCAAAGATAAGAG 10526 37 97.3 35 .....A............................... ACAATACAATTACTCATTCTCCAGTTTGATCCATA 10454 37 97.3 35 .....A............................... TTCGTGTTATCGCTTGACCAAGTCCATTAACCGCG 10382 37 97.3 34 .....A............................... TAATTCTTGCTTTTGTGATTCCCTTCTTCCTGAC 10311 37 97.3 36 .....A............................... ATTCGAGAGTCCGTAAAGCGTGGGAGACAAGGAGGT 10238 37 97.3 36 .....A............................... CACACTGCAATAACTCCTAAAATATGGAAAGCTACA 10165 37 97.3 35 .....A............................... CATGGTGATAGTCATGGTTAACAAAGTGTTTAAAT 10093 37 97.3 35 .....A............................... CTAGCGACAGGATCTGCTGTAAATGCATCATAAGA 10021 37 97.3 34 .....A............................... AGATAAATCGCCCATGTCTACAAAAGAAAGAAGA 9950 37 97.3 35 .....A............................... TGTCTCTAGCGGCACTCTGCTCACCAGCTCGATTC 9878 37 97.3 32 .....A............................... TCGGCACTGTTATATTAAGGAGTCCGAGAGGA 9809 37 97.3 34 .....A............................... TTTGTTATCACTGATTTGCGTCTCGGTGTTAATG 9738 37 97.3 35 .....A............................... CGGAAAGAGACTTAACGCTTTTCCAGACCTGAAGG 9666 37 97.3 37 .....A............................... CTCATCAAATCTGTTGGAGCTTGTGCCCGCTTCGCTC 9592 37 97.3 36 .....A............................... CACTGTTGCAGAAGGCGGAGCAAGCGACATTGTAGC 9519 37 97.3 34 .....A............................... TACGTTGTAGTGTTTGCAACCTCATTACCATCAA 9448 37 97.3 36 .....A............................... ATACTAATACGCTTTTTAGATATAAAAAGGTATCTA 9375 37 97.3 32 .....A............................... CGTTTCCTTCTTTGAGGATGCAGGTCATTTTT 9306 37 97.3 35 .....A............................... AAATCTTTTTTATCGCTTATCTGTTTCCAGTGATA 9234 37 97.3 34 .....A............................... TAGTTACATTCCATCAACAAAAAGAGCCTTACAG 9163 37 97.3 34 .....A............................... CTGTCTAGGCTGCCCGTATCTATTTCGATTCCGG 9092 37 97.3 34 .....C............................... TTAGTAGATACTTAGCTAAGTAAATGTATAAATA 9021 37 100.0 35 ..................................... CTTATGTTCTGTGCTCTTAAAATAGTGCGCGAAAA 8949 37 100.0 37 ..................................... CCCATTTCCCGCCGTACTTTTCAAAACCACAGTCAAC 8875 37 100.0 33 ..................................... AAAAATGACTGAAAGAGCACCAAATAGACCAGG 8805 37 100.0 35 ..................................... CCATGTTAAATCCTCACGTTGATATCAGATATTGA 8733 37 97.3 34 .....A............................... AGTTTTCCCTCAAACATCTGATTACCTAGGGCAG 8662 37 97.3 36 .....A............................... TTTGAGAGTGTGCAATATTTGAATTGTTCTTTTTTT 8589 37 97.3 35 .....A............................... AAAATACAAGTAAAGTAAGCCACACAATCCCTCTC 8517 37 97.3 35 .....A............................... AAAAATCCCTCAAAAAAGCCTTTTCTCAAATTGAA 8445 37 97.3 34 .....A............................... CCAACGTATCAAGAAATTGAAGTGACTACTCCCA 8374 37 97.3 36 .....A............................... TTGATTCTTCCAACGGGTCTACAAATACCGCGTCCC 8301 37 97.3 35 .....A............................... ATGGGCTGTCTAAAGGGGCTAATGGGGCTAATTTC 8229 37 97.3 36 .....A............................... CGTCCCATCCGGCAAGAGCGAGGTAATACATGGCTT 8156 37 97.3 34 .....A............................... TTTTTCAAAAGAGGACATTAAAAAGAATAACAAG 8085 37 97.3 36 .....A............................... TTGGAAACTCGCAAATCCTGTAAAAATTGAAAACCC 8012 37 97.3 34 .....A............................... TTACAATGATCCTGGATACGGGTCAAAGTCGGTA 7941 37 97.3 37 .....A............................... TTTTGCTAGCTTCTAGCATTCTCACACTTAATAGCTG 7867 37 97.3 35 .....A............................... CAGTTGCGGTATGTTCTTTGACACCTACAATAATT 7795 37 97.3 34 .....A............................... AATAATAATACAACAAGTCATCCAAGTGACGGGT 7724 37 97.3 43 .....A............................... TAACCCTCACAAACAGGGGTAATCTACTGTTAGAGTGCCTGAC 7644 37 97.3 32 .....A............................... TTATCAGCGTGGATATAATACTTATATTTCTT 7575 37 97.3 37 .....A............................... ATTTTGTTCGGGGATTTTAGATTTTTGACTTTCGACA 7501 37 97.3 36 .....A............................... TGGTTGCCTGTCCTTGCCCGTCAAGAACGGTATTGG 7428 37 97.3 38 .....A............................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 7353 37 97.3 38 .....A............................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 7278 37 97.3 34 .....A............................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 7207 37 91.9 0 .....A.............................GT - Deletion [7171] 7169 34 78.4 36 ---..A..AGT..C....................... CTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 7099 37 81.1 35 TG...A..AGT..C....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT T [7084] 7026 37 83.8 34 .G...A..AGT..C....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT T [7011] 6954 37 81.1 36 GG...A..AGT..C....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC T [6939] 6880 37 78.4 0 TG...A..AGT..C......................G | T [6864] ========== ====== ====== ====== ===================================== =========================================== ================== 129 37 98.0 35 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : TTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAGAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTGT # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [42-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //