Array 1 1738938-1740615 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLD01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03383 2014LSAL03383_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1738938 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1738999 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1739060 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1739121 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1739182 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1739243 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1739304 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1739365 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1739426 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1739487 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1739548 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1739609 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1739670 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1739732 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1739793 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1739854 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1739915 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1739976 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1740038 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1740099 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1740160 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1740222 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1740283 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1740344 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1740405 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1740466 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1740527 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1740588 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1756874-1758855 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLD01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03383 2014LSAL03383_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1756874 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1756935 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1756996 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1757057 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1757118 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1757179 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1757240 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1757301 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1757362 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1757423 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1757484 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1757545 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1757606 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1757667 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1757728 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1757789 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1757850 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1757911 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1757972 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1758033 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1758094 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1758155 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1758216 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1758277 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1758338 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1758399 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1758460 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1758521 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1758582 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1758643 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1758704 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1758765 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1758826 29 96.6 0 A............................ | A [1758852] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //