Array 1 977121-978229 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027746.1 Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 977121 28 100.0 32 ............................ GTTGGCTCAGTGCTGATGCGCGACGCCGGGAC 977181 28 100.0 32 ............................ TGGGAAGGCCACGGCCAGAACATCGTCTACGC 977241 28 100.0 32 ............................ AATGAAGAACCCGGCGCTGACCGCCGCTAACG 977301 28 100.0 32 ............................ TTGAGCCATACGAAGTTCAGCGGGTTTATCTC 977361 28 100.0 32 ............................ TAGTTGTCAGCAATACGGCCAACGTCGAACTG 977421 28 100.0 33 ............................ ATCCGTTACTGACGCTTCTTGCATTTTCTTAAA 977482 28 100.0 32 ............................ TGGTCACGCACGCCAGGGCCACCTGGCACGGT 977542 28 100.0 32 ............................ ATAGCCGCGCGCAACGCCGGCGTCTGCAAGAC 977602 28 100.0 32 ............................ TGGTTGTAACGCTGATCGCGGCTAACCACCTC 977662 28 100.0 32 ............................ AGACGAAATGGACATTTGAGGATCTGCAGCAT 977722 28 100.0 32 ............................ AGATACCGCGATGCCACAGGCCATCAGGTCGG 977782 28 100.0 32 ............................ CGGCACCAGTTTCGGTGCCGACCAAAGCACCC 977842 28 100.0 32 ............................ AACAAGCGGCGCCGTAGCCGCTACGTCACGAG 977902 28 100.0 32 ............................ AGGGGATCAGGGTGTAGTTGTCGGGCATGCCC 977962 28 100.0 32 ............................ CTACTGCTGGCCGAGGCCGGCGAAACCTTCAT 978022 28 96.4 32 ...........A................ CAGGATCGCGCCGAACAAGAGCACCGCCTGTT 978082 28 96.4 32 ...........A................ ATCTGCGCTTCGCGGCCAGCGTTGTAGGACTG 978142 28 92.9 32 ...........A..........C..... AGCCGGGCTTTTTGGTTTCTGCAATTTGGCTA 978202 28 67.9 0 .C.........C.C.......CC.AGCG | ========== ====== ====== ====== ============================ ================================= ================== 19 28 97.6 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : ACCGCTCGGTGCTTAAAGCGCTTAAAGAAACAGCCAGCTCTACCATTGGCAACAACTCGCTCTTCACCGTCCGCCCAGGCATCAGCGCCGAAGAGGCGTTGCTGCATGTGTCGATGCTGCTCAAGTCCGCCGAGGAGGTTTCCGACGAGATCACCGAGCACGCCAGCGGTATCGAGCGAGGCCTGATCTGGTCGCTGGTGCATTCCGTGGAGATGGCGCGCGGTGTGGTGGATGCCTTGCTCGATGGTAATCGTCTCTGATCGACAACGGCCCGCTGGCCGCGATCCTCCTTGAGATTCGCGGCTGGGCGGGCCAGCCAAAACGGATTCATGGCGCTAGTCTGAGCGCCGGTGTTCTGTCCCTGACGCTGACCCTTTTTTCCGAACGGATTCCGGCCCTATGTAAATCAAACACTTACAAAGGTCTCTAGAAAGAGGAGTAAATATGGTGTCCAGCATGATTTCTCTTTGAAATCATGGCGCTATTGGGATATCTGTCTA # Right flank : GTTAATCCATAGCATCAGTCCGCGTTGGGAGATAACACCGCGACCCAGTTCCCAATCTCACTCCACAACCATGCCACCTACCAATCCCACCCCTTGTCATATCCCCTTCATCGCCGCCTACTAAGGTTTGCTTTTGACATTAAGTCAGGGAGCAACCATGAGCGATTTCACTCTCGGTCGGCGGCGTTTGATTCAGGTGGCGGGGGCAGGGCTGTTGCTGCCGGGGTTGGCGCCGGCGGTGATTGCCTCAGGCAAGGACCGGCCGAAGATGGTCGATGGCGTGCAGTCCGGGGATCTGCTCGGCGATCGGGCGATGGTCTGGAGCCGTACCGACCGGCCGGCGCGGATGGTGGTGGAGTGGGATACCCGCAGCCTGTTCAGCAACCCGCGCAAGTTTGTCTCCCCCCTGGTCGATGCCCGCACCGACTTCACGGCGCGGGTCGAGTTGGGTGGGCTGCCCACCGACCAGGCGATTTTTTATCGGGTGTACTTCGAAGACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5821034-5822801 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027746.1 Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5821034 28 100.0 32 ............................ AGTATGCGGCCACAGTGGGGCAGACGCAGCTT 5821094 28 100.0 32 ............................ ATGATCGAGTGCATCAGCACCGCGGTATCCAT 5821154 28 100.0 32 ............................ TATGTCATCACCAACATCGGCAACACCGTCCG 5821214 28 100.0 32 ............................ ACCAGCAGGCTGCCGTATTCGCGTCGCATCAC 5821274 28 100.0 32 ............................ GCGGTTTGCGTCTTCCTGGGCCTTGAGGAACC 5821334 28 100.0 32 ............................ TGATAATCGACCAGTCGCTGAAAGGGCACATT 5821394 28 100.0 32 ............................ AGATCCTGTCGAAATCACGGTTTACCGTTGAC 5821454 28 100.0 32 ............................ AAGGCCGCCGCCGAGCGCCGCGAGCTGGAGCT 5821514 28 100.0 32 ............................ CGGCTGATCGAGCGCGGTAGCGCAGTGAAGAC 5821574 28 100.0 32 ............................ TTTTGGCGTTTGGCCAGAAGGCCGCGCAGCGC 5821634 28 100.0 32 ............................ TACCGCGAGAGCTACGGCCGCAGAACTATGGA 5821694 28 100.0 32 ............................ TGGTCGAGGAAGGCGACGACCTGCAGCCTGGC 5821754 28 100.0 32 ............................ GCTGCGCCCGGTCAACACAACTCAGAGCGATT 5821814 28 100.0 32 ............................ CTGATCTGATTCCTATTTCGCTTTGGGACGAT 5821874 28 100.0 32 ............................ TGCTGGCGAAATCAGTAGGTTTTATGTGCCGC 5821934 28 100.0 32 ............................ TCGTCATCATGCTCCTCCCTGTTAAAGCTACG 5821994 28 100.0 32 ............................ GTGAGACGGTCGGCCACCGGGCGGCGGTCCTC 5822054 28 100.0 32 ............................ GCCCCCTGATGAGGACGAAAAGTTGCAGCAAG 5822114 28 100.0 32 ............................ TGGCCCAGGGAATTGCGCGGCGTGCCGGTGTG 5822174 28 100.0 32 ............................ TTCCAGCCGCCCGCTGCCGGCGGCTTGACCAT 5822234 28 100.0 32 ............................ AGGCATCGTTCACCGGCGGTTCGCAGATGCAC 5822294 28 100.0 32 ............................ AGGCCGAACGCGAAGCCACTCTGCGCCGCGAG 5822354 28 100.0 32 ............................ ATGCGGTGGAGACCGCGGTTGATCGCTTCGTC 5822414 28 100.0 32 ............................ AAAGCGAAGCAGCGCTCGGTAACTGCTGATGA 5822474 28 100.0 32 ............................ ACGTACCCGTCGGGCACGCCCCGGGTTTGTGC 5822534 28 100.0 32 ............................ AGGGAAACATTGATGTTGCCGCTCTGGCTCTT 5822594 28 100.0 32 ............................ ATCTGCAGTACCGCTGCCGGCGCCGTCTGTAA 5822654 28 100.0 32 ............................ CTTCGGGCGCTAAGACCCGGATAAATCGCCCC 5822714 28 96.4 32 ............A............... TGTCCGCAGCCTTCCAATTCGATAATTCATTT 5822774 28 67.9 0 T..........C.........CCGTTCC | ========== ====== ====== ====== ============================ ================================ ================== 30 28 98.8 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGCACTGGCAAGCCTGTTGGCGCTGAACTGGCTGACGGGCATGCGCGATCACGTACAACCGAGCGAACTCCGCGCAGTACCAAGCCCAGTGCAATACCGGCATGTCAGCCGCGTGCAGACAGACAGCAACCCCGAACGCGCTCGCCGACGCCTGATCAAGCGTCACGGGATTACCGAAGAAGAAGCCCGCCAACGGATTCCCGACCACGCCGCAAAACGCTGCGACCTGCCCTTCGCCAACCTGCGCAGCCACAGCAACGGCCAGACCTTCCGCCTGTTCGTCCGTCATGGTCCATTGCTCGACACACCACAGCCAGGCAGTTTTGGCAGTTATGGTTTGAGCACGACGGCAACCATCCCCTGGTTCTGACCCTCTTTTTTCCGCCTGACAAAGCCCCTTGTAAAATCAATGAGTTACAGGGGGCCACGGAAAAAGCCTATAAACCCGGTTTTGAAGGGTTTTCTCTTTAAGAACGTGGGGTTATGGAGGGAGGGGTCTA # Right flank : CCTTCTCTACGGCTCAAAAACGCACCCTCAACACACTCCCCAACCACCTCCCCCCGACATCCAGAATTTTCATACTGACCCCCGCACTTTATTTCGTTTGCGACGCGGCCTCGCTCTTGGCTTAGATAGCCGCCATGTTCCAGGTAGCCAGAGCCCTTAGCCCATGAGCAGCGAAAGCATCAGCCAGTCGATTTCCATCGTTCACCCCATCCGCCTGAGCCACGGCAAGAATGCCGAGGTGTGGGACGAGAACGGCAAGCGCTACATCGATTTCGTCGGCGGGATCGGCGTGCTCAACCTGGGGCATTGTCATCCGCGGGTGGTGGCGGCGATTCAGCAGCAGGCCACCCGGCTGACCCACTACGCGTTCAACGCGGCGCCCCACGGGCCCTATGTCGAGTTCATGGAGCGGCTGGCGCGTTTCATGCCCTTGAGTTACCCGGTCAGCGGCATGCTCACCAACAGCGGCGCGGAAGCGGCGGAGAACGCCTTGAAGATCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //