Array 1 128378-127988 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNZC01000003.1 Pseudomonas oleovorans strain RS1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128377 29 100.0 32 ............................. GCAAGCCAGAAGCCCCGGATTTACTGACCTTG 128316 29 100.0 32 ............................. GTTTATGCGCGTGCGCGCGCGTGTGCGAAAAA 128255 29 100.0 32 ............................. TTCAGCCTGTTCATCGAGACGCTGGGGGTGGA 128194 29 100.0 32 ............................. GCTTCGTCGCGGTCAGCCTCGACCACCTTTAC 128133 29 96.6 27 ............................C CTGTCGCCCGCCTCGCCCGCCCTGGGC 128077 29 100.0 32 ............................. TGAGCTTCGCCCGTTGCGCCAAGGCCATCGAC 128016 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 31 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATCCCCACCATCGAAGAGGTGCTGTCCGCAGGTGGTATCTCGCCACCCGAGGCACCGCCGGAGTCCGTACCACCAGCTATCCCCAACCCGGAAAGTATCGGCGATGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTCGTGGTCACCGAGAACGTACCGCCGCGCTTGCGCGGACGCATGGCTATCTGGCTGCTGGAGGTGCGTGCCGGCGTCTATATCGGTGATGTCTCCAAGCGCACCCGCGAAATGATCTGGGAACAACTGAGCCGGGGGCATGAAGATGGCAGCGTTGTTATGGCCTGGGCGAGCAACCACGAGTCGGGTTACGAGTTCCAGACGCTAGGCCCGAACCGTCGTTTGCCGGTGGACTTTGATGGCTTGAATCTGGTCGCCTTTCAGCCCTTGGAAAACCCTGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCGGCTAATTTTCCCCTCTGGGGACAATTGGTTACGCTAAGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 140617-139489 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNZC01000003.1 Pseudomonas oleovorans strain RS1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 140616 29 100.0 32 ............................. TATCTGTTCAACGGCACCATTGATTGGCTGTT 140555 29 100.0 32 ............................. CTGCTGGCACGCCCCGGCTACTTTGAGCCGAT 140494 29 100.0 32 ............................. CTCGTGAAGGCGGCGCAAAAGGCGATGGCGAA 140433 29 100.0 32 ............................. TGCGAATAGCGCATGGTCATCTTGATATCGCC 140372 29 100.0 32 ............................. GTCGCGCGGTTGCTGACCCTGGCCGGCGAGGC 140311 29 100.0 32 ............................. CCCCGAATATGACGCAGCACATTCAAACTTGC 140250 29 100.0 32 ............................. TCCGGCTCAGCCTTGTTCAGCGCGCGCTTGCC 140189 29 100.0 33 ............................. GTGAACTGCTCCAGGCTGGCATCAACACCGGTC 140127 29 100.0 32 ............................. CGCATCGAGAATATTTGCATTCTGACAAAACC 140066 29 100.0 32 ............................. AGTGCGCATTGGCTTGGGCGTGAGTGTGGAAA 140005 29 100.0 32 ............................. CCCGCAGCAGCTCAACACCTGGCGCGAGCAAA 139944 29 100.0 32 ............................. CTGGCAGTCAGCATCGTGCTGGGCCATCACCG 139883 29 100.0 32 ............................. TCGGTGAACTTGGCGAGATGCTGGTCAAAGAA 139822 29 100.0 32 ............................. CGTTGTAACTAATCCATCAGGCCCGGTTACAA 139761 29 100.0 32 ............................. ATCATGATTAACCCCTTACCACTGGCCGAGCG 139700 29 100.0 32 ............................. CAGATTGATGCGCGGGAGGCGCTGGCAAAGGT 139639 29 96.6 32 .................A........... CGCATGGAGACGTTGGTTTTGCCGAACTGGAA 139578 29 100.0 32 ............................. TTCTGCATTTCCTCTTCGTTGCCTTCGCGCTC 139517 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GGAAACCATCATGCCGCGCCTGTACCGCGAAGCGCCGGTCAACTCGATCTGGGAAGGCTCGGGCAACGTGCAATGCCTGGACGTGCTACGCGCGCTGTCCAAGGAACCTGGCGTGCTCGACGCGTTGTTCGCCGAACTGGGCGATGGTCACGGCGATGCCCGCCTGAAGGCGCATATCCAGCGCCTCAAGGCAGATTTCGCTGATACAGCCGACATCCAGTACCGCGCGCGCCGGCTCACCGAAGACATGGCCGTAGCCCTGCAGGCGAAGCTGCTGCTGGAGGCGGGCAACGCCACTGTCTCCGATGCCTTTATCGCCAGCCGGCTGGAAGGCCGTGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCGCTGCTGGCGCGTAGCACGCCGAATCTGCTTTGATACAGGGGCAATCTTTAACAAGGAGAAGTTGGTAGGTTTTTAGCGGCTGATTTTCTCCTTTAAGGAACAATTGGTTAGGCTAAGT # Right flank : GCTCAAGCCAAGACGCACGAATCCTTAGGAGCGAGCTCTGCTCGCGAAGCTTCTGACTCATCCAGATTCACGAGCAGAGCTCGCTCCTACAGGTCAGGCAGTCAGGCATATTCACCGCGGCGCACTGGTCTCCCCCTGCGCTGTTGTCAGTCCAGAACGATGCTGGCACTTTGTTGGGCCAGTAACGATGCGATGCAAGGAGTGCCAGATGAAAGGATTCGCCGATCTCAGCGAGCAGGCCCGTCGTCTTTGGGCCAAGAGTGACGATGGCTTCGGTCATGGTGTGCTGGCGCATTTGCTGGATGTGGCGGCGGTGGCCGAGCGGATGCTGGCCCATGAGCCTCCGAGTACGCTGGATTGGGCCGCTCAAGCGCTGGGGTTGGAGCGCGAGCATGTCGCCCGCTGGGTTGCCTGCCTGGTGGGCCTGCATGACTTCGGCAAGGCCATCCCCGGCTTTCAGGACAAGTGGCTCGCTGGGCGGCAGGCTGATGAGGCGCTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 73757-72347 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNZC01000007.1 Pseudomonas oleovorans strain RS1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 73756 28 100.0 32 ............................ AGCTCCGGCAGCGGGTTCGGGTCAGTCCAGAA 73696 28 100.0 32 ............................ TGCCACACGCGGCCGCAGGCGTAGAGCGTGGT 73636 28 100.0 32 ............................ ACGCCCTGCGCGTAGTTGCAGTACCTGCCTCG 73576 28 100.0 32 ............................ ATAAGGCGGCGACTAGGGATTCCAGTCGCGTC 73516 28 100.0 32 ............................ TCCAGCTCCGCCAACTGATCGTCTGTAATACT 73456 28 100.0 32 ............................ GTCTAAGGCGAAGTCTGGCTCGGGCAGCTCAG 73396 28 100.0 32 ............................ GTGGCCGAAGCGGAGAAGGTGCTGATGGCCAT 73336 28 100.0 33 ............................ TGGTCACGGATCTGGTTCAGGGTCATGGATTTT 73275 28 100.0 32 ............................ ATGAAACGGCCTGCGCTCCAGCCACAAATCCA 73215 28 100.0 33 ............................ TGGTCACGGATCTGGTTCAGGGTCATGGATTTT 73154 28 100.0 32 ............................ ATGAAACGGCCTGCGCTCCAGCCACAAATCCA 73094 28 100.0 32 ............................ TGGGCGATGGTGGCGAGGATGGCGCCGATGGT 73034 28 100.0 32 ............................ TTGGCGATCTGGGCGTTGCAGGTTTTGCAGTT 72974 28 100.0 32 ............................ AGCAGCAGCCAGTGCGCGGCAATCCGTCGGCA 72914 28 100.0 32 ............................ AGGCGATGCCGAGCAGTGGATAGCCTCGGATG 72854 28 100.0 32 ............................ CCGTCCAGAACGCGAACTGCAGCAGGTTTCGG 72794 28 100.0 32 ............................ ATGCTAACCACAACGGCGAGGCGAAACGAGGA 72734 28 100.0 32 ............................ ATGGGTTGGTCGGCGGCGGTGCTGGTGGCAGC 72674 28 100.0 32 ............................ TGGTCGATGAAGACCAGGACTTTGTCCGGGTT 72614 28 100.0 32 ............................ TAGCACCGGCGAAGTTTGCCCCCCTGGCGATG 72554 28 100.0 32 ............................ TCGTAATGATTTGGCGCAAACTTCCCCCACTT 72494 28 100.0 32 ............................ TTGAAGGCTTCGCCATTGGTGGCGCCGCACTG 72434 28 100.0 32 ............................ TGCTGCAGAACGCGTTGCATCCGCTTGCGCTC 72374 28 75.0 0 .....................AATTTGC | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCACTGCCGTGTAGGCAGCTCAGAAATCGCCAGTGCGCTCGTCGCGGTAGATCTCGGG # Right flank : GCGCACTTCGCTTCGCTCCTGAGCCCGCCCTACGCAAAAATCCGTGTCCGGAACCAAGCCGCCGGTCTAAGCGGAATCGCAGATACGACTCGCTGCCGCACGGACTTTCAGGTGTCCAAACTACGAAACATCACATGGCAATCCACCAGGCCATACCGGGCGTGGCGGTAGGCCTTGGGCAAGGTGCCGACTATCGCGAAGCCGTGTTTCTGCCACAGCGCGACCGCGACCTCGTTGGTGGCCACCACGCTGTTGAACTGCATGGCGCTGAAGCCCAATTCACGCGCCACCTGCAGCGAATGGGCGCAGAGCCGGCTGGCGATGCCGCGGCCACGGGCGGCCGGGGCGGTCATATAGCCGCAGTTGCACACGTGGTCACCCGGCCCAGCGGCATTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGTCCTGCTCGGCAACGAAGGTGGCGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTCTCACGATCCATGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 75602-75274 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNZC01000007.1 Pseudomonas oleovorans strain RS1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 75601 28 100.0 32 ............................ TGTTCAAGGCCACCGACTACGCGCTGATTCGC 75541 28 100.0 32 ............................ ATGTATGCCGGTGCGGTTTGCCCGGCCTCCAG 75481 28 100.0 32 ............................ TGCTGGATCTGCCAGACTGACACACTCAGGTG 75421 28 100.0 32 ............................ GCCGCGCCACGAAATCCACATATCCCCAACCG 75361 28 100.0 32 ............................ TGCGCATCAGCGAGGCTGCACGCGAGCTGGGT 75301 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGCGCTGGATAAGTTGCTGGCGCTGAACTGGCTCAGCGGCATGCGCGACCACTTGAACCTGGGTGAACTGGCGCCCATCCCGGCGAAGGTGCGCTGGCGCTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAGCGCCACGGCATCAGCGAAGCAGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCTTATGCCACCTTGCGCAGCAACGGCAGCGGTCACAGCTTCCGCCTGTTTATCCGCCACGGCCCACTGCTCGACAAACCCACCCCCGGCACCTTCGGCGCCTACGGCCTTAGCGCCCAGGCCAGCGTGCCCTGGTTCTGACCCTTTTTCCCAGCCCAAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAGCACCGGAAAAATCGGGCAGGTTCTTTAACAATCAAGCCGTTAGGGTTATTAGGCTCTA # Right flank : AGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 86485-86035 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNZC01000007.1 Pseudomonas oleovorans strain RS1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 86484 28 92.9 32 .C..........A............... AGTTCCAACCAGGCTTCGACGAGCCTACGACA 86424 28 92.9 32 .C..........A............... TGACCAACTCCGTCATCAAAGGCGAACAGCAT 86364 28 92.9 33 .C..........A............... ACGTCCCACGCTTTCATCACCAGCTGGGTTTTC 86303 28 100.0 32 ............................ TGGTCGAATCCGCCCAGCTCTACGCCCCGCCC 86243 28 100.0 32 ............................ TTCATGTGCGCGGCGCGTGGCTTGATCTTCTC 86183 28 100.0 33 ............................ GATCACGGCCAAACGCCCGTCGGCCACCATCAA 86122 28 96.4 32 ...........T................ TGCACGCAGAGGCCGAGTCGCTGCGGACTGAG 86062 28 75.0 0 ...........TA........C.GCC.C | ========== ====== ====== ====== ============================ ================================= ================== 8 28 93.8 32 CTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : GTAAGCGGCCAACGCCGACAGCAGCAGGTGACTCAGCCAGAACGACACCGATTGACGCAACAAACTGACGTAGTCGACCTCATCGATCCGACCCCAGGTAATCAATGTGATGACAATGCCGATCACCCCGACCGCCAAGGCAACCCAAGCCACGTGGCGCGGCAATGCCGGCCACTCGCCCGGACTGGAATTCACTGCCGCAGCCGGCAAAGGTTCGAAGGGATTGGCTTGGCTCATGAGGTACTCCCTGTCGAGGTCTGAATCCATCGAAACGCGAGAGTACCGCCCCTCCCAGCAGGGCAATAGCTCGAGATGGCAGAACTGTGCGGTATGGCCAGACAACGGTCAGCACCTACAAGGCATGCCCATACCCATTTTTCTACGACGGACAAATCGTCTTTTAAAAATCAATGAGTTGCCGGATGACGAGAAAAAATGGTCAACCACCACCGAATCCCGCCATACCTTGAGCGATGCAAGTTTGCCGGCTATCGCGCCTA # Right flank : TTGGCAGCCACAAGCAAAAGGGCTTAACTGCCAGCATTGTTTCAGGAGCCCCTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTCCATTCCAAACGCGCCAACCTCTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGTGGGCGGGTGGAGTACGTGACCGACGCAGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAACACCACCACTATCCTCCTCGGCACCGGCACCTCGATCACCCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTGGGTTTCTGTGGCGGTGGCGGCACACCGCTGTTCTCGGCCAACGAGATGGACGTGGAGGTCGCCTGGTTCTCGCCGCAGAGCGAGTACCGCCCCACCGAGTACCTGCAGAAGTGGGTAGGGTTCTGGTTCGATGACGGCAAGCGCCTGGAGGCGGCCAAAGCCTTTCAACTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGCT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : TCACTGCCGAGTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //