Array 1 303134-303748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMN010000002.1 Listeria monocytogenes strain 2013L-5400 NODE_1_length_1469912_cov_59.8654_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 303134 29 100.0 35 ............................. GGAATATCTCGCGCTCTCCTATCCCCAGCCGATGG 303198 29 100.0 37 ............................. AAAAACAGATTTATATTTAATGCAAGCGAATAAAATT 303264 29 100.0 38 ............................. GGAACAATTAGACACTACTATAGATAAGATTAGACAGC 303331 29 100.0 37 ............................. AACATTAGAATGACGATTGTTTCATAGGCTCGTTTCA 303397 29 100.0 37 ............................. GAAACAAGGAAGATGTTTATTGCACCAAAGGGGCAGT 303463 29 100.0 34 ............................. GCGTATTTCAATGACACCTCTTTATCAGCGCCTA 303526 29 96.6 35 ..............A.............. CTTATTATCGAAGCAGGTACAAAACTATTAACATC 303590 29 96.6 36 ...........C................. TGTTTTTCGCAACGTCGGTGCTTCGAGCCATCGAAT 303655 29 96.6 36 ..............A.............. GGAATCACGGACAGTCAGGCGAAGATAACTAAACTG 303720 29 79.3 0 T.....A........CA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 96.9 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTTGTGATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCACCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCACCAATTTTCTTATTTTTCACT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 319346-322222 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMN010000002.1 Listeria monocytogenes strain 2013L-5400 NODE_1_length_1469912_cov_59.8654_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 319346 29 100.0 34 ............................. CAGAAAGTAATCATCAATTAGAGGTGGCCATGCG 319409 29 100.0 37 ............................. AAAGTTGCTATTTAACAGAAGGCTATTATAACGAAAA 319475 29 100.0 35 ............................. AGGCCTATATGGAGCTATTAAAACTTCCTTTCTAG 319539 29 100.0 35 ............................. CAATAAGTAGCTAAAATGCGCCGAAACAGCGCCAG 319603 29 100.0 35 ............................. GTCCATACAACTTTTCTAATTGAAGCCCTAAATCA 319667 29 100.0 37 ............................. CAAGTAGAAAAACGTCTTTCGCTTTTTAGCATGCGTT 319733 29 100.0 36 ............................. TGGTTCTAATATAAGAGGTTGTCCCGCCCATTTACC 319798 29 100.0 36 ............................. ATCCTTTTCAGAGGACATAGCTTTCGAAATGACCTC 319863 29 100.0 36 ............................. TGTTGTGAATTTGCTTTTCGGTCAAGTTCATTTGTT 319928 29 100.0 36 ............................. AACTTTAATGAAGACAGATATTGAAAAAGCAATGAT 319993 29 100.0 36 ............................. GAAGCTTTAAAAAAGAAGTGACTTGCGAAAGCGAAC 320058 29 100.0 37 ............................. ATTTTCACCATTTATATTTCCTTCTCTCATTATTATT 320124 29 100.0 34 ............................. TGATATCTGCTTCGGTCATGTTGACTTGTTTACC 320187 29 100.0 37 ............................. GAATACTTTTGCCGTAAGGGTACATCGTTGTGTATAA 320253 29 100.0 37 ............................. GTGCGCCAAATTTGTGGATACGCACTAAATCAAAAGC 320319 29 100.0 37 ............................. ATGCGTTATGAGTCCAAAAAAGAATTTGTCACAGATG 320385 29 100.0 35 ............................. TGTTAGAACGGTAAATCGTCATCCGATATATCAAT 320449 29 100.0 37 ............................. ATGTACAGGAGTATAATTTCAGATTACTTAATTTTAT 320515 29 100.0 36 ............................. CGTTTCAACTTGTTGCGCAAGAGGGTGCTTTGTGGC 320580 29 100.0 37 ............................. TTTTTCGTTCATAGTCTAATTGATAGGAAATAACATC 320646 29 100.0 35 ............................. AGAACCCTAAAATAGGACTATTGAATATTTTATAT 320710 29 100.0 36 ............................. ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT 320775 29 100.0 38 ............................. GCTGGTGTTTTCGTACCTTTTCCCTCGGGAGTACGAAG 320842 29 100.0 36 ............................. TCATTTAATCTAGCCTTTATTAGCGCTTGCGTGCTC 320907 29 100.0 36 ............................. TCATTTAATCTAGCCTTTATTAGCGCTTGCGTGCTC 320972 29 100.0 36 ............................. TCATTTAATCTAGCCTTTATTAGCGCTTGCGTGCTC 321037 29 100.0 37 ............................. ACTTTTTCGGCAAGCTTTTGCGTTACTTTTGCTAGCG 321103 29 100.0 36 ............................. ATTAAGTAAACTGACTGGCATCTCACAAAATACATT 321168 29 100.0 36 ............................. CTTGTTGAAGTCGTTGATTTAATCGGTCTATACTTG 321233 29 100.0 37 ............................. AAAATCCTTTTTTGTTGTCATACCAAGAAAGTTTTGT 321299 29 100.0 36 ............................. GCATATCGAAATAAACTAAAAGCAGCGGTCAAAAGG 321364 29 100.0 36 ............................. GGAGTTCAACAGCGATATGGCGTTGGCGGTGATATT 321429 29 100.0 34 ............................. GTAATAGAAGAAGAGGATCTATACGAAACTACTA 321492 29 100.0 24 ............................. TTGCTAGACCTCTAAATCATCTGC Deletion [321545] 321545 29 100.0 36 ............................. CTGCGTTCGTTTCGCGTAAAATACCCAGTCTACCGT 321610 29 100.0 36 ............................. GTAAAATCAAACGACTTATCCATTTTTCCCCAGTCA 321675 29 100.0 37 ............................. GTTCCTTTGCCAACAATTCCCCCAACTAAAACAAGAA 321741 29 100.0 36 ............................. TCGCTCCATTTGTATCCTTTCTTGTGCATGTACACC 321806 29 100.0 36 ............................. GAAGTCGGTTTTATGGTTAAATTAAGACAGGAGTTA 321871 29 100.0 34 ............................. ATACTTGTTGTGCGCATAAACAAGTATTGCTGTC 321934 29 100.0 37 ............................. CCTCATTCAAAATAAAATCAATCACTCTGTAATATCT 322000 29 100.0 36 ............................. TTGAAAACTGGGGGTTTTATCAAGGTAGCGACATAG 322065 29 100.0 36 ............................. AATTCTGCACAGAATTTACCAAGCGCAATCATCAAT 322130 29 100.0 34 ............................. GGTGTTTGCCTTGTTAACTTGTCACGAGAGATAG 322193 29 93.1 0 .......................A....C | C [322216] ========== ====== ====== ====== ============================= ====================================== ================== 45 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGTGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCAAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCTGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAATAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGTGTCTGCACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //