Array 1 55933-56380 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJV01000011.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55933 28 100.0 32 ............................ CCAAAGCATCACCATCATCTAGCATCCATTGA 55993 28 100.0 32 ............................ TGCGGCTATGCTTCAAAAGTATTATTTGTCAC 56053 28 100.0 32 ............................ TCTTTGTCACACTATATGTTGGCACCGATTGG 56113 28 100.0 32 ............................ TTTACCAGCAGAAAAATTATTACCGGGCACTT 56173 28 100.0 32 ............................ ATACTGAATAATCCAAATATGAATAATCCTCT 56233 28 100.0 32 ............................ AAGTTCGTGAGCCAACAGCACCACTTGCAGTT 56293 28 100.0 32 ............................ AATGACATCAAGCACATCAACATTTGACATGT 56353 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACAGATGGATATTTTGCCCGCACAGTTGGTAAACATGGAAACGAACAGATGATTGGCAAATATGTTAAAAATCAAGGCAAAGAATATAACAAATTACACTCGGACTATCAGTTCACACTGTTTTAAGATACCCCGCTGCTTGCGGCGGGGTTCTTCATTAAAAAATTTAGAAAAAAGATAAACGGAAATAAATGTGTATATAGCCGACATCTTATTGTTGTATAAGTTATTTTTTCCTCGTTCCAATGATTAAAAAGCTTGCATAGAAATCCACTTTCAATGTCTACCAAGTTTTACCTGGGTTTACATTTTTATTGCTAAGAAGGATGGTGTCTCCTTGGTTCCTTGGTTCCTTGGCTCCTTGGCTTTGACCCTTTTTTATCGGTAAATTATAATTCATTGATTTTAAATAGTGTTTTATCTCTTCTGTAAAAAAGGGTTTTTTGACTTTTTATAACTATACTTTTTAATAGTCAATAGGTTAAAGTTAATCTGTAACA # Right flank : AACTCGGTATTATTCCTGATTCATGAAAGACACTATGTAATGTTTTGGTAAGGAATTGTAAATTTTTTTAATTTACATTCCCGATATTTTACTTGTGTAAAATTTATGCATAATATTTTCTATAAGTAAAATTAATTATTTGGGCGATTCTTGACTATGGATAACAACTTTTCTCCGAGTGATCTCAAAACGATTTTGCATTCCAAGCGATCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTGAATGGTGGTCGTGTTGAATATGTCACTGATGAGGGAAAACAATCACTGTATTGGAATATTCCAATTGCCAATACCACCGTTATTATGTTGGGAACGGGGACTTCTATTACTCAAGCTGCAATGCGTGAATTCGCCAGAGCGGGTGTTTTAGTTGGTTTTTGTGGTGGTGGAGGAACGCCGCTGTTCGCAGCTAATGATGTTGAGGTTGATGTGTCCTGGCTTACGCCACAAAGTGAATATCGTCCTACTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 68420-69047 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJV01000011.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 68420 28 100.0 32 ............................ AATAACGCTTTAGCATCTTCTCCCGTCATAAC 68480 28 100.0 32 ............................ ATAAAATGGGCGTCCGTGGGGGTGAGCTATGT 68540 28 100.0 32 ............................ TATTTTAACCCACTCAATTAACTAATAACTTG 68600 28 100.0 32 ............................ ATGAGTGCCCAATACCAAACGGATTAGTTGTA 68660 28 100.0 32 ............................ GCACGAATGGCCGCTTGCGTGGCGTTTAAATC 68720 28 100.0 32 ............................ ATAAAATCAGAGTCAGCTAATCCGTTTAAATC 68780 28 100.0 32 ............................ TCTCATTTAAGATTTAACGTTTTTAACGTCCA 68840 28 100.0 32 ............................ GCCGAGCGAACGTTACGCAGAAATAGAAAGAG 68900 28 100.0 32 ............................ TTGCACTTTCTTATTCGAAGTTTTTTCATTTC 68960 28 96.4 32 ...........C................ TGAAATTAACGTAATCTCTCACATACCTTGCA 69020 28 78.6 0 ...........C..........GC.CGC | ========== ====== ====== ====== ============================ ================================ ================== 11 28 97.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGTTGCAGGATTTACAGGCGTTACCTTGGTTAAAAGGGCTCAGGGACTATACTGAAATGGTTGATATCCAGCCAGTACCTAAAAACACTCGATATCGTTGTGTTAGCCGGGTACAGGTTAAAAGTAACGCAGAGCGGCTTCGTCGTCGTTCGGTTAAAAAGGGCTGGCTAACCGAGGAACAAGCCCGGCAATGCATCCCAATAAGCAAAGAACAACGTACTGATTTACCGTTTCTGAACCTCAAAAGCCTGTCATCAGGACAAAGCTTTCCGTTGTTTGTTGAACAAGGACCAATAGAAGACAGACCAACACCAGGAGTTTTTAGTTCTTATGGATTAAGTGCGTCAGCTACCATCCCCTGGTTTTGACCCTTTTTTAGCGGTTAATTATAACCTTTTGATTTATTTAAGAGATTAGCCGCTGCTTATAAAAAGGGTTTTTCCGCTTTTTTTAACTATGCTCTTTAATAATCAGTAGATTAAAGCTAATATCTAACA # Right flank : CTCAATTGAGCGCGCTAAAAAATAAGCTAATCTTGTTTTCTAATATGAGTTATTTCTTATGGTTTTGAGCATATTCTTCACTGTTAACCCATTGATGGTCTTTCTCCCAGGTAAATAGCCACTTGCGAGTTGGTCCTGCCATGACATTGAGATAGTAGTTGTTATAACCAGCAATGGTTGCCACTGGGTGATAGCCCTTGGGAACAATGACCACATCTTTGTTATAAACCGCCATTGATTCATCCAGTGAACAGTTATCGGTATAGACTCGTTGCATACAAAATCCCTGCGCTGGGTTCAGGCGATGGTAATAGGTTTCCTCCAGATAGGTTTCCTGTGGTTCATTGTCAGTATCGTGTTTGTGGCTGGGATAGGAGCTGGTACAGCCCTCATCGGTAAAAACTTCGACCACTAATAAGCTATCAGCAGGTTTGTTATCCGGCAGGATATTGTGAACATAGCGCTGGTTGCAGCCACTCCCGCGTTTTTCTGCGTCAATA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //