Array 1 75705-73486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNCQ01000023.1 Delftia lacustris strain LZ-C contig23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 75704 32 100.0 36 ................................ CAGGACTACTCGATCAAGGATCGCAACGAGTTTGGC 75636 32 100.0 34 ................................ CCGACTTTCGAGGCCGCATGTGCATCACGCGATG 75570 32 100.0 34 ................................ CCTCGCGTCGCAGATGCTGTGTCGGCTTGCTATG 75504 32 100.0 35 ................................ AATACGCACGCGGGCGCCCATCGGCATTGCGGCAA 75437 32 100.0 33 ................................ GAGCAGTCGGCCCTATGGTCCGATGGCCAGGCC 75372 32 100.0 33 ................................ CACCAGCGGTGCCTGGTCAGCCGTAGCGCTGTG 75307 32 100.0 34 ................................ TCGCGGAAGAAGGCCTTCATGGCTTTGGTGCGCT 75241 32 100.0 35 ................................ TGGACTTCACGGATGCACACAGAGCGCAGGCCTTC 75174 32 100.0 34 ................................ TCCAGGCGATAGATCAGCCGGCGCTCTGCAATGC 75108 32 100.0 35 ................................ ATCTCATCTCTCCTTGAGGCAGACCCAGCTGCCGT 75041 32 100.0 35 ................................ TGGTCCACTGCTGTGGTCTTTCCCTGGCGGACCAC 74974 32 100.0 34 ................................ GAGGCCCTGGCCCTGCTGATGCGCCTGCGCCAGT 74908 32 100.0 35 ................................ AGCCGGCAGATGCATGCCCAGCCAATGGCCAGGCA 74841 32 100.0 34 ................................ TCGCTGGCCAGGTCCAGGGCATCCATCTCCAGCT 74775 32 100.0 31 ................................ CTGTGCGGGCTCGCCCACGGGGCGCCCGAAC 74712 32 100.0 33 ................................ ACAAGGCTGGGCTCATGAGCATAAACGGACTTG 74647 32 100.0 33 ................................ CTTTTGTCTTCGCCCGAAGGCCTGGGCGGGGTC 74582 32 100.0 35 ................................ TCCACGGCGCGCGAGCGCGTTGGTGGCCTGACGGA 74515 32 100.0 35 ................................ CATGCCAATGCTGGTGCGCTGAACGTGCGGCTGGC 74448 32 100.0 36 ................................ AGCGACAGTGGCGGCGGAAGCCAGCAGGTCACGAAG 74380 32 100.0 33 ................................ TCCAGCAACTCAGCCAACCTCAGCGCCTCGCTC 74315 32 100.0 34 ................................ GTTCCCGGTGCCATAGGGCCCCAGGCCAAAACCG 74249 32 100.0 35 ................................ GCCGGGTTTGGGCGGGGATTCGACTGTAGCGCCGC 74182 32 100.0 34 ................................ AGCGCAGAAAGCGCCTTGGGGATGAAGCCTTCGA 74116 32 100.0 35 ................................ CTCTTCGGTGGCGCCAACCCCGTCAGCAACACGGT 74049 32 100.0 35 ................................ ATCAAGGCGGATGAGGATCTATCAGACCTGCTGAA 73982 32 100.0 35 ................................ ATCACGAAACCCGAAGGCTTGACCGGCGCAGCTGC 73915 32 100.0 34 ................................ AATCAGTTTGCGGACCTCACTCCAATCATTGAAG 73849 32 100.0 36 ................................ GCTGCTCGATCTGCTGATGATCCTGGATCGCATCAA 73781 32 96.9 34 ................A............... ATCAGCCTGGGGTGCTCAGCGCCGTCGTACTCGG 73715 32 96.9 33 ................A............... GACCTGGCGGCGATGAGCCCGGATGTCAGCCCA 73650 32 96.9 34 ................A............... TCTTACGGTGAGGTAACTATTCCATATTCGCGCA 73584 32 100.0 35 ................................ GGATTGCCCAGGAGCGGCGCTGGCCATGCAGGCCC 73517 32 90.6 0 ........A.......T.............G. | ========== ====== ====== ====== ================================ ==================================== ================== 34 32 99.5 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GGCGTGAACTACGTGACCGGCGATTACTCGCGCGGCGTCAGCGGCTTCTGGGTGGAAAACGGCGAAATCGCCTTCCCCGTGCATGAGATCACCATCGCCGGCAACCTCAAGGACATGCTCAAGGGCATCGAGGCCGTGGGCGCAGATGCCTACAACTACGGCGCCAAGGCCGTGGGCTCTATCCTGATCAACCGCATGAAGGTGGCTGGTAGCTGATTGGCTTGCGGCTGCGCATGCTGAGGAAAAGCGGCCTGAAAGGCCGCTTTTTTGTGGGCACCCAGTCACCGCGTGCCCCGGCCGCAGTTGGCCGCACCAGCTCGCGTCCCGCGAACCCCAAGTGACCTTTGTCCTCCCCTGAGGTTCGCATTTCTGCAAGCCGTTGTTTTTGTTGAGGCATCACGGCGTCTGTCGTTGTCCTTGCCGTTTTTCCGTGACAGAGCGCACAGGTTCGCGATGGCGAAGCTTTTTATGCAGTGGTACGGCTGGGTTATAAGCATGCC # Right flank : ATGGCCATCAAGCGCGAAATGAGGGGTTCTGGCAATCGCTAGCAGCCCGATGCCTGCATGCCGGCAAGGCGCTGTCCTACTGGATGTGCAGGGTTTGGGAAGGCGGTGCGAGTGATTCAAATTGTCAAATTTGTTCCTGGATGTGTTTCTTCCGTGCCAGCAGTCTGGCCGGTTTGCGTAGGTGGTTCGAGGGAGAGCGACGTGGGTTTTCTGAGGCGTATGAAGTTGGGAACCATGCTGGGCATGGGTTTCCTTGCGGTGATCGTGGTCTGCGTGTGCGTGGCCGGCTTCGGCTGGATGAAGCTGCACGATCAGGGGGAGCAGTTGCGTGTTTTGGCCGAGGACCGCATGGGCAATCTGGCCCGGCTGCAATCGCTCAAGGACAACGCCAATGTGTCGGCGCGGGTGGTGCGCAATCTGGCGCTGATCACCGATCCGGCGCAGATGGCCGAGGAGAGCCGCCGGCTGGATGAGGTGGTTGCCAGGAACGGCCTGGTCAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 27544-28472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNCQ01000057.1 Delftia lacustris strain LZ-C contig57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27544 28 100.0 32 ............................ TTCCCCGGCTTGGCAATCCAGAAATCGCGGAA 27604 28 100.0 33 ............................ TGTGGAAAGACAGGAGAGGGCGCATACCACGCC 27665 28 100.0 32 ............................ ACCACCCCGGAGGCAGCATGAGCAAGACAGAG 27725 28 100.0 32 ............................ TACGAGTCTTGGGCGGGGAAGGGGGCTCAGGC 27785 28 100.0 32 ............................ GTGGATTCGGTCCAGCGCTGGTACTGGCCCTC 27845 28 100.0 32 ............................ AGAAAGACGACGCCACGCAAGTCAGGGAGCGC 27905 28 100.0 32 ............................ AACCCCGTGGCAGCCGCGCGCGCCTGGGCTGA 27965 28 100.0 32 ............................ AACCCCAGGCGCTGGAGTTCAGCGCCGATGCC 28025 28 100.0 32 ............................ TGAAGAACCGCGGCGGCTCCAAGGGCGAAGTC 28085 28 100.0 32 ............................ TGGCGAGCAGTCCGACACTGAAATGCCCATCC 28145 28 100.0 32 ............................ ACTTCCACGAGCTGGACGCTCTATCCGTCGCC 28205 28 100.0 33 ............................ ATGTCGATTCGTCGGCAGTGCCTTCGATCAGCG 28266 28 100.0 32 ............................ TTGTCGAGAGCCACCGTACCCACCCGCAGCCA 28326 28 100.0 32 ............................ GTAGGGCGCGCCGAAATTGGGCGCCACGATGT 28386 28 96.4 32 ........................A... AGGGCCGCCGCCGACTGGCCCGCCATCGCCTC 28446 27 96.4 0 ...........................- | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : CGCGCTGCGCGGCCTGATGGACCAGCCCTGGCTGCAGGGCATGCGCGATCACGTGCACTGCACGCCGCCAGCTTTGGTACCAGAGGGCGCCGTGCCCTACCTGGTGCAGCGCCGGCAATTCAAGACCAGCCCCGACCGCCTGCGCCGCCGACGCATGCGGCGCAAGGGAGAAACCGCAGAACAGGCTGCGGCCGCCATCCCCGACAGCGTGGAGCGCACCCCGGACCTGCCCTACGTTCAACTGCGCAGCGCCAGCACCGGCCAGCCGTTTTGCCTGTTCGTGGAGCAGAAAGCGGTGCAGGGCGCGGTGGGCCAGGAAGGCTTCAACACCTACGGGCTGAGCCTGGGAACTGCTGTTCCCTGGTTCTGACCCTTTTTCTGGCGGCCTGTGGGGTCGCCTTTCAAATCAACAACTTGGCGACGCCTCGGAATTTTGGGGTGTTTTCGGGTTAGGGGGGAAAGTTCTTTAAAAATCAATGAATTGGGAGGATTTTTATCTA # Right flank : | # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 195529-193939 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNCQ01000008.1 Delftia lacustris strain LZ-C contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 195528 28 100.0 32 ............................ ATCGCCATCGACCGCTGACACGGTGCCCGTGA 195468 28 100.0 32 ............................ TGGGTGCAATTGCCGGAGGGAGAAGCCCCCAT 195408 28 100.0 32 ............................ CGGGAATCATGTGGGGCGTGCCGCTCGAAGCC 195348 28 100.0 32 ............................ TGTGTCGTAAGCCCTGCGCTCATACCTCGGTC 195288 28 100.0 32 ............................ ACACCACCGTGACCTCGGCCGACGCCCTGACC 195228 28 96.4 32 ...................A........ ATGTCCGTGGGCCTGGCCAAGCCCCGCCCCAT 195168 28 100.0 32 ............................ CTGAGCACGGAACCGAACGCCGCGCACCGTCT 195108 28 100.0 32 ............................ GAACTCCAGCGACCTCGAACTTGAGGACGTTG 195048 28 96.4 32 ..................T......... AGGTCATGCCATCAGCCATGGCGCGCCGGCAG 194988 28 100.0 32 ............................ TCTTTGAATCGGGTACGAACGATGAGCACGAC 194928 28 100.0 32 ............................ GCATGGGTGCGCGAGCAGATCGATTTCGCAAC 194868 28 100.0 32 ............................ TGGCGCACGTCTCGCTTGCTCATGACGATCCT 194808 28 100.0 32 ............................ ACTGCGCAGCGCCGCCACCTTGATTCGCCGCA 194748 28 100.0 33 ............................ ATCTTCATCGCGCAGTGGCTTCAGCTCCTGGTC 194687 28 100.0 32 ............................ ACTGACCTGGTCGAACTGCTCGACCAGTTGCG 194627 28 100.0 32 ............................ AGAGTGGTGCGTCTATGTCGAGACGCCCGGAT 194567 28 96.4 33 ............A............... CGAAGTCAAACAAGTGCCTCGCGATCACCTGCG 194506 28 96.4 32 ............A............... ACTGCCACCTGGTGGCGCATCACCAAGGAAGC 194446 28 96.4 32 ............A............... GCGAGATCGAAGCGCCCATCAAGTCCGGCCCT 194386 28 96.4 32 ............A............... TGGACCGCATCCGCACCATCTCGCGCGACAAC 194326 28 96.4 32 ............A............... TAGATCAGAAAGAGCATCACTCGCGGCCTGAG 194266 28 92.9 32 ............A............C.. AACCAATCAGTATGGTTTCAAGCACATTGAGC 194206 28 92.9 32 ............A....T.......... CTCGCCGCCCGCCGCACCGAGCCCCGCGTGCA 194146 28 96.4 32 ............A............... AGTCTTTGGGCGGCAGCCTGAGGCCGGCGCGG 194086 28 96.4 32 ............A............... ATTCCCACGGTGCCTTTGCCGTATCGCTCGTT 194026 28 92.9 32 ............A.G............. TGGCTCAAGGCCCTGGCCTGGTGCCTGCTCGC 193966 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.0 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : T # Right flank : GGCTGCTGACTTGGAGGCGACAGAGAAGCCTCTGCATTCAACCCTCCGGGCCATGCTCCGCGTATTCCACAAAGGACGGTGCTTCATCAAACAGTTGCAAGAGCAGTTTCAGGCGCCGGGCGTAGAGGCTCTGTGGCCGGTTGAAGGCCTGGGCGGCCAGGGCGATGGCTGCGCGGGCGAGATACCACTCGTTGTCGAATTCGCTGGCGTCCTCGAATACCTTGTGCCGGATTTGCCGGATGTGGTTCAGCGCCAGGTCTGCGGCCAGGTCCACCTCGACATCCGCGTCATGCCAGTGCATGTCGGCACAGCGTGTTTCGATCAGGGCAACCAGCCCCATCTCTGCGCGGGCAATGGACAGGGCGATCATTTGCTGCATGGTGGGCCAGGCAGCGGTGTCCATCGTGCAGGGCTTGTTCGTTGAGTGCCGTGACGCAGCCATATCGATTCCTTTGTCATCGCTTCAATGACTCGGGCTTTCTATGCACGATCTATGCACT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //