Array 1 434-1190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTCK01000024.1 Streptomyces sp. CNQ431 contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 434 28 100.0 33 ............................ TCCCTCCATGATCCAGTCAGTCAGTCGGTCAGT 495 28 100.0 33 ............................ GCGGCCTTGCCCCATACCCTGTGAGTGTCGAGC 556 28 100.0 33 ............................ CACGGACGAGATGAAGAAGCGGGGGGTCCACAT 617 28 100.0 33 ............................ GACCGCCGGCGGGGGCGTGGGCCAGGTCATCTC 678 28 100.0 33 ............................ CTCGAAGGGGAACCCGATCTGCTTCAGCTTCGT 739 28 100.0 33 ............................ CATGATGTGGGGGCTCTCGTCGTCCAGGTCGAT 800 28 96.4 33 ......................C..... GGCCCCGGGGGGTACGCACCTACTGCGTACCCC 861 28 100.0 33 ............................ GAAGGTCGGGGCTTCCGTGGTGTCGGTCATTTC 922 28 100.0 33 ............................ GTTGAGGACCGGTCGCGGGTCATCTTCGAGCAG 983 28 100.0 33 ............................ CCGCCGTCCGACCGGGCAGCGCGGCTGGTACGC 1044 28 100.0 33 ............................ CTCGGTCGTCCCCTCCGTGACCGCCGTGGTTCA 1105 28 100.0 29 ............................ TGCCGCCCGACCGAGATCGTCAGCGAGGG 1162 28 75.0 0 C.......A..G..T.T..T.....C.. | T [1177] ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.8 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CATCACCGCCCATCCAACCGCTGCGACCGCCAACCCGGCGAACCTATGCGGTCAGAGCACTAGGTATGTTGGTGTCGGCGGCGTGCGGCACCCCTGCTTGACTTCGAAACGCCGCCTTCGCCTTCCCCTCCCCCATCAATCGGCCCGGCCTGGTACCGGGGCCGCGTCGCCTGCATGGAAATCTCGCTCGCGACGGTCCTCGCCCTTGCGCTCTGCGGCCGGCGGGCCCACTGGGTGCTGGGCGCACGGCAGTTGCCCGCCGAGGCACATGCGTGGGTGTGGACCGAGGACGACGCATTCGGGCTGTCCGGCCGCGACCGCCCGGCCCCCGCCGCCTCTGGGCCGGCGCCCTCGCCGCACCTCTCGTGCCGAAAGGGTGACGCACATGAATGAAAATGAGGCATCCTCGCGGTAACCTCCCAGGTCAGCAAGTG # Right flank : CTTCCGGAGTTCGGTGCCGGAGGCTCCTGACGATCAGTCGGCTCCTGCGCCCCCCGGCTGGTCGGACGGCCCACGGGTGTAGGTGTGCCCCCAACGACTGGCACGTCCATCCTGAGATTGAGATATATCCCCCCGCTCATATGCCCTCTAGAAACGGGTGACCTACCAGAGAGAGGGCATCAGTTCCCTTATTAGCTGGTACGAGTGACGGGTTGTTGAGTAATTAACGGCTCCGAGTAGGGTCTTGTTGTTCGCTCGTTCCTTCGGCGTGAATGTCGGCTCGATAGCTATCTGCCGAGATGCGGAGGAATCGTGTTGAAAAAAGAACAGCCTGACTGGGCGCTTGGTCTCCTGATCGTCTCTGCTCTGGAGGTCACACTCCAGTGGGCGATCTGGCTCAGCTCCTAGCCAGGCAGTCTCGTAACAGTGGCGGCGGGGTCGGTCATGCCAAAGCGGACCCCGTCGTCACGTACCGCACCGCTGAGCATCTTCCCCAGGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6797-7250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTCK01000024.1 Streptomyces sp. CNQ431 contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6797 29 96.6 32 ............................C CCCGCCCCGCCGACGACCTCCGCCAGCAGATC 6858 29 100.0 32 ............................. TTTCCCCGGCCGGGGGGTGCTTGCTGGGGGTG 6919 29 100.0 32 ............................. TGGCTGTAGAGCAGCCGTAGACCGCCCTGTAG 6980 29 96.6 32 ............................C GGGCCGTCCCATAGCACCGGCCGTACCGGGGA 7041 29 100.0 32 ............................. GTGGCGTCCGATGAGGAGCTGCTGCCCTTCAC 7102 29 100.0 32 ............................. CAGTACCCGGTCTACCGCGACGGCCGCCGGGA 7163 29 100.0 32 ............................. GTCGCCGAGCGGTACCGCCTGGTCCACACCCT 7224 27 89.7 0 ...........-.-..............C | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : CTCCGTCAGCTCCTCGTCGTCCATGCCCGGACAACGCGCGGACGGTGATCCGGACACGATCCGGGTCAGTCCGGACCGGCGTCCGGATCGTGCCCGGACGCCGGACAGCGCATAAGGCCACCCCGAAGGGTGGCCTTATGGCGTCGGCCGACTGTCGAAAGTCTCAAGCTGTGCCGCCGTATCCGGTGGCAGACGACCATCCCGGGCACCGACGGTCTACGGGCGACCGCCGTCTCCGGTCGTTGGCGGGGCCATGCTGGTGGGCCGGTTCGGCACGGTGCCAGCAGAACCAACAGCCACCTCAGCGAGACGACCAGGCACGCACCGTCCGGGGGTGTGACACCCTCCGGTTCCGTACGGTAGGCGAGTCTCTCGCGGAGGTCGCGTACGTCGCGATCTCTGAAGACGGCCCCCGCCATTCGCTGCCGGCCCACGAACGAAGGGTGAAGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CGCGCCGTCCGGGACGTCGGCTCCGAGCCAGCCTGTGGTCATTCGATCGGGGCTCACTTCGGGCCGCTGCGGCAACTCACCTTCGGGCTCACTGCGCGCGGCGGGGCCGGTGCTGCGGCGGGATCGCGTTTTTGCCCTCAAGGAGCATGATCGCACGGTCCGAGGCCGGAGCGAGGCCCGAACGGAGGGCTATGCCGCCTTCCTGCGGCCGGGGCCGAGGATCTCCAGCCGGCGGACGGTCTCTCGGCCGCCGGTCTCCTCGGCGATGCGGTCGAGCAGCGCGTGCTGGCGGTGGCGGACAGCGGTGGCTGCGGCCGAGGAGTCAGGCTGGAGGGTGAGGGTCGCGGTGTCTGCGTCGTACTTGACGGCAGTGACGCGCCCAGCGAGGTCGTCGGCGATGTGCGACCACCGGTCCAGCACGCCGCCGGCCGCGACCGGAGCCGTCCAGGCGCGGTCGGCGATGAGCTGCTGGATGGCCTCGCCGAAGGCGATTGGCTCCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1976-361 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTCK01000056.1 Streptomyces sp. CNQ431 contig_56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1975 29 100.0 32 ............................. GCGACGTTCCGCCTCGGCCTCGGCCTTGGCTG 1914 29 100.0 32 ............................. GCCGAGGACGCCGACCGGCAGGCCGAGGACGA 1853 29 100.0 32 ............................. GGCGGCACAGAGGCGTCTGCGGCCTCGGTGTG 1792 29 100.0 32 ............................. ATGAAGCGGCGCCGGATCTCGGTGTGGGACGG 1731 29 100.0 32 ............................. CCAGGCGACGGCCAGCCACGGGCCCGGGTCCG 1670 29 96.6 32 ............................A CTGACCGTCGCATTGTTCCAATGCGCTCTAAC 1609 29 100.0 32 ............................. CAACTCCGGTAGCGCTGGCCGGGGGTGACCCA 1548 29 100.0 32 ............................. GTCTGGAGGCGCTGGGAGACGCTGCCCGACGC 1487 29 100.0 32 ............................. CCCGCGCTGCGGGACGCCGCGATCGCGTTCTT 1426 29 100.0 32 ............................. GGGTTGGGACGGGTGTGCGATGAGCTGGAATC 1365 29 100.0 32 ............................. ACCTTGTGCGTCTCGTGACCCGCGCCCAGTGG 1304 29 100.0 32 ............................. GAGCTGGCCCGCAAGAGCGGCCAGGACGGCGA 1243 29 100.0 32 ............................. GTGCACCCACCCGCACCTGCACTGGTACGAGT 1182 29 100.0 32 ............................. GCCGCGGGGAGGGTGGTGCCGTCGGGGGTGAC 1121 29 100.0 32 ............................. GCGCAGCAGAAGTACGACGACGCTGTCTCGCA 1060 29 100.0 32 ............................. TTGACGCGGCTCCGGGACCAGCTCGGCCAGGC 999 29 96.6 32 ..................C.......... GCACGATCCGGCGAACAGGGAGATGTCATGGC 938 29 100.0 32 ............................. GCGTCTTTCCCGGGATGACGCTGCGGGGTTCA 877 29 100.0 32 ............................. TCGGGCCACCCGGCCCGAGACCGCCGACGGGG 816 29 100.0 32 ............................. TTGATGCCGGGGGCCGTCCTGTGGGGCGGCCC 755 29 100.0 32 ............................. GTCGAGGAGGAGGGCCCGGAGGGGTGCGGGTG 694 29 100.0 32 ............................. GAGTTCCAGCGGGCCCCCGTCATGCGCACCGG 633 29 100.0 32 ............................. CGGGCTGTGGGTGCACAAGCAGGCCGTGGGCC 572 29 100.0 32 ............................. GCGGTGCTCACGATGGTGCGCGATCTGAGCGG 511 29 100.0 32 ............................. GCGGGCGGCCAGACGGCGCCGCCCTGCTCCTC 450 29 100.0 32 ............................. TCGGGCCGGTCGGCGCGGTACGGGGTGATGGA 389 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : CCGGCTACTCCCGCGCATCGTGGGGGACATCCAGTCCTTGTTCCAACCCGGCTTCACTGCCCCGGACGACCTGGAAGAACAGGTCGTCGATCTGTGGGACCCCGAGACCGGAAACATCCCAGGCAGCCGAAACCACGCCCCCACCTGACACCGCGAAAGACGCCATGCCGAACATGACCGTCATCAGCGCCACCGCCGTTCCAGCACACCTTCGAGGCGCTCTGAGCCGCTGGCTGCTCGAAATCACACCATCTCTCTACATCGGAACCATCTCAGCCAGAGTCCGAGAAGAGCTATGGAACAGGACCACCGCGAGCATCACCGACGGAAACGCCGTCCTCGCCTACCCATCGAGCTCAGAACAGGGTTACACCGTCCGCACCGCAGGTCCGCAACGGCGCTCCGCCGTCGACTTCGAGGGCCTCGTCCTCATGGCCTTCAAGGACACTGAAGGAAGTAAAGAAACTGCAAATAGCGGGTGACGTCGCAGGTCACGAAGG # Right flank : GATCCCGCCCCGGGGCATCACCGAGGGTCTGCAGGATGTCAGCGTGACCTCGCATACTGAGGTGCGGGGAGCGCGCTCGTGCCGTCGTTAGTACCTACGGCGAGGGCTAAAAGGGGCACGCGTGTGACGGGCAGCAGAGGAGGGGCCGAGATGGCCAGGAAGCCGTGGATGCCGAGACCGACGTCCGCCGTAGCCGTGATCAACCCGGACGCGCCCGAAGCCGACAAGGACCTCCTGCGAACCGCTCAGCGAAACCCGGCGGCTCTCGACCGCCTTCCGGACCTCGGCGCCCCGACACACAAAGGGCGCCTTGCCCTCGGCGCCGTCACAACGGGCGGCATGGGCGCCTTCTGGGCGTTCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10898-9953 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTCK01000087.1 Streptomyces sp. CNQ431 contig_89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10897 29 100.0 32 ............................. TAACGGGGGGCCGTTACCCCGGTCATGGGGCA 10836 29 100.0 32 ............................. TCCGTGCTGCGGGATGGGGCGTCGAAAGTGCC 10775 29 100.0 32 ............................. CGACGAGGGGGCCTTGCTGGCGGAGCCGGTGG 10714 29 100.0 32 ............................. CTTGGGTGCGTCTCCGGCGTCGGGGGTGGGTG 10653 29 100.0 32 ............................. ACGGCGAGGTCGGCGGGGAAGTCCGGGCCGCC 10592 29 100.0 32 ............................. CATGCGTGAGCGACCACATCTCGTCCACCTGG 10531 29 100.0 32 ............................. CAGTCACATCGGGATTCACAGGGCCCTCCGAT 10470 29 100.0 32 ............................. CCCGCGACGGCGAGGGAGACGGGGTTGGCCTG 10409 29 96.6 33 ............................A GTCCCAGGCGGTACCGGGCATCGCGCACTCAGG 10347 29 100.0 32 ............................. GATCGGGCCGTAGGGCTTCTGCTGCTGTGCGG 10286 29 100.0 32 ............................. GCCGCCTTGGGCGCCGCCATCCGCAAGGACCC 10225 29 100.0 32 ............................. CGATCACGAGCCCACCGCCTGCCCGGTCGTGA 10164 29 100.0 32 ............................. TAGACGGACCTCAGGACGAGGACAGGCACTGC 10103 29 100.0 32 ............................. GCGAAGCGGACCGAGGGCGACGAAGGCGACGA 10042 29 100.0 32 ............................. GTCGAGCGCACGGGGATGCTGCCCGGCACGGT 9981 29 93.1 0 C....................A....... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.4 32 GCCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : GACCCGCCGTACATCGCGTCGTCGTCCACCGCCTTGAACGCCTCCGGCGCCTTCACCACGAACGGCGGCGTGATCTTCCCAAGGTCATGAAGCCCCGCCCAGAACCCCGTCACCAACCTTGCCTCCGCCACCGAGAGCCCCAACTCAGCGGCAATGCGCCGACGCATCCCGTCGCTCAACACCTCGTCCCACAGCACGAGGAAGACCGCAGCCGAGTCCAGCAGATGACAGATCAACGGGTACAGGCCAGGAAGCCCATGCTGCTTCCCCCAGAACCTGGCATCCAGCACGAGTCGCTCACCATTCGACATGACGGCGTCATAACATCCCCCACCGACACAACCCCCTGACCGGCAGCTACACGTCACCAACCGCCACGCCGACACCAACACCGCGATAAAGTCCGGCGCATGACCAACCCCCTATCAACGCACCCCACCCGGCCAGTCGCCCTTATTCAAGAAATTGCAAAGGCCCTATAACGCCGCAGGTCAGGAAGG # Right flank : TTGATGCCGTGCCTAAGAACTCCTAACGAAATGATCTTCGAAGTGGTTGGATCACTCCGGGACTGTTGATCTGGGGGTGTGGGGTGGCTCGGCCGAAGCCGTGGGAAGTCGATGACGAGTTGTGGGTGATGGTCGACTTGCTGTTGCCCAAGGTCAAGCGTCGAACCCAGCACCCAGGGCGCAAGCGGCATCCGGACCGGCTGGTGTTCCAAGGCATCCTGTTCGTGCTGCACACTGGGATCTCTTGGGAACATCTGCCGCAGGAACTCGGTTTCGGCTCGGGCATGACCTGCTGGCGGCGCCTGGCCGAGTGGACCGAGGCCGGGGTGTGGCCCCGGCTGCACGAGGTCCTCCTCTCAAAACTCCGCAGCGCGAACGCCCTGGACTTCTCCCAGGCGGCCGTCGACGGCTCCCACATCCGGGCGTTAAAAGGGGGCCCAAGACGGGACGAAGTCCTGTCGACCGGGGCAGGACGGGCAGCAAGCACCACCTGATCACCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //