Array 1 851-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKV01000010.1 Cronobacter sakazakii strain cro780C3-2 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 850 28 100.0 32 ............................ AGAAAATCGGGCGCACTGAGCAGGAAACCGCG 790 28 100.0 32 ............................ AGCGGCAATGATCCGCGCCCGCGATAATTTAA 730 28 100.0 32 ............................ AGCTTCTGCGCCTGCTCCTGAGATAAGCCCAG 670 28 100.0 32 ............................ GGCCTGGACAGCGTCACGATAACCAGCACGAC 610 28 100.0 32 ............................ ACTCGGACGGCCTGCGGGGAACGCTCTGCGGC 550 28 100.0 32 ............................ TCGATAACGCCCGGTAAATACGTATCGACAAG 490 28 100.0 32 ............................ CACGTGATTTCGTTTTCACCCCGGATAACGGC 430 28 100.0 32 ............................ CGGATAAATGGACGCTGGAAAGATGTGCCAGC 370 28 100.0 32 ............................ TCAGCTTGAAACGGTTTTTGGCGCCGTTATCA 310 28 100.0 32 ............................ AACTAGCACTCGCGAGCGAAGTTTGTCAGTCG 250 28 100.0 32 ............................ ATAGGCGGCAAAGCGTGCGGCGGTCTGCTCGA 190 28 100.0 32 ............................ AGGTACGGGCACGGAATAGCGATCACGTTCCC 130 28 100.0 33 ............................ GCTTGAATTCTGGGTGATGACGCCGGTAGCAGC 69 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGCTGGCGGAATTAGAGGCCATGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACAGGTTCAGGGCTGGCGCACCGTGACGCGCGTACAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTTCTGGTTTACAGGTGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAGAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTAAAACACGCCTCGCTAACTTGTTGATTTTTTTAATAGGTTAGTGAGGCGTTGAAAAAAGAGTTTTTAAGAGGTAAGCAGCGTTTATGTTCTAGAAACAATGGGTTAAGCTGTTTTTTGCTTCA # Right flank : AAGGGGTCAGCGGGGCAGGCGTTTACCCCGTGTTCACTGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10792-9503 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKV01000010.1 Cronobacter sakazakii strain cro780C3-2 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10791 28 100.0 32 ............................ TCCGCGCGCACGTTTGAGCAGACGCAGCGGCA 10731 28 100.0 32 ............................ TGATATTGAAGACGTTTTGTTGAACGGCGCCA 10671 28 100.0 32 ............................ TACCTGGTCGAGCAGACCGACCTCGCGTCTGA 10611 28 100.0 32 ............................ GCCCCGCTGCTGGCGCTGCGGGAGCGGGCGGA 10551 28 100.0 33 ............................ CGACCAGCCCGTCGATAGTGAACACCCCGCCAC 10490 28 100.0 32 ............................ AGCTCCTGCTCACACGCCGACAGGTCGTCGTA 10430 28 100.0 32 ............................ AGCAGCTATAGACAGGAGCTGTCTCGCGTACA 10370 28 100.0 32 ............................ TTTAACGATAACGGTGTACTCACCGCAATTTT 10310 28 100.0 32 ............................ GGAAAAGACAGCACTGCGACGGCTGTAATCGC 10250 28 100.0 32 ............................ AAAGTGCCCCGAACACGTAGCGCGCTGGCGAT 10190 28 100.0 32 ............................ ATCGCGCGCTGAATTTTAAAGCGCCCGTCGAA 10130 28 100.0 32 ............................ TGGATATCCAGGCGCCTGAGGGCGAGCACGCG 10070 28 100.0 32 ............................ AGAGAGCAGCATTGAAACAACGCCGTGTCTCT 10010 28 100.0 32 ............................ GTTGATACTCCCGCGCATTATCGGCATCTTTA 9950 28 100.0 32 ............................ GCAGATTGCTGAGTATGAGCAAATGATGGAAG 9890 28 100.0 32 ............................ AGCGGTTGAGATTTGACGCGAGCGGCCAGCTC 9830 28 100.0 32 ............................ AGCTCGTCGCGGCGGTTATCAAGCGCGACCAC 9770 28 100.0 33 ............................ GTGAACGCTGATTTCTTTAGAAAGCGGGATAGT 9709 28 100.0 32 ............................ TCACCCACACTCCACGGCCCCAGGTGTAGCGA 9649 28 100.0 32 ............................ GTCGGCCCGCTGTAAATCAGGGTCCAGACGCC 9589 28 100.0 32 ............................ TGAATCCAGCCCGACACCGTTTTCTCGTCGTC 9529 27 75.0 0 ..............CT.T..AAA.-... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : TTTTAAGCCCGAAGTAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCACGGTAAAATTATCCATAAAATTTATGGTTTCTACTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGCGCTAATTAGCCGATATAACGGCGATGACACGTAAGAACTACATTAACTACAGATACTTGCAGGTTTATTGCCTGTTACGGTGCGTTGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATGGCGAAGGCCTTATAAAAGTTGACATTTAGTGTTATTTATTAATAAAGCACGGGAAATGAAAGGGATATCACGGCATATTTAAAGCCTTAATAATAGACTTATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCCCTCTGATTTAAAAACGATTCTCCATTCAAAACGCGCCAATATTTATTATCTGCAATACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 796184-794874 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKV01000002.1 Cronobacter sakazakii strain cro780C3-2 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 796183 29 100.0 32 ............................. AACGTTGCGGCGATTGGCATCACGCTGAACCC 796122 29 100.0 32 ............................. ATCAGCACGACTGGATTAACGGGTGGCTTGAG 796061 29 100.0 32 ............................. CCGTAGAAAACTGCACAGTCAGACTAACTGGC 796000 29 100.0 32 ............................. CAATACGAGGATGACGCAAGAGCCCTGTTTGA 795939 29 100.0 32 ............................. GTAACAGACTTACCGGCTGGGAACAGCGACAG 795878 29 100.0 32 ............................. GCCAGTGTCGGAAATAACAACGATCTTGTCGT 795817 29 100.0 32 ............................. TTCTTTTCTCCTGCCGCTGTTGACCTGGTTCA 795756 29 100.0 32 ............................. AGGCTTGTAACCAAGCCTCTTTTTATTTGATT 795695 29 100.0 32 ............................. CTATGGGACGAGTTCGGCTACCCGGAAACGCT 795634 29 100.0 32 ............................. CAGGTGTCGTAGAAAATTCCTGTCCAGCTGGC 795573 29 100.0 32 ............................. AAAGCAGCAAAGCGCGCGGCGGGTGATAAAGC 795512 29 100.0 32 ............................. ATCTGATTCTCGACCGATTAAGGAAAAAGCAA 795451 29 100.0 32 ............................. TTCGTGCGGAGTGACGGCCCAGCCGCCCAGCT 795390 29 100.0 32 ............................. ACAACAGCCAGGCAAATACCTCAAATGGCTCC 795329 29 100.0 32 ............................. TCTCTTACATTTGACGTACTGGACGCTACCGA 795268 29 100.0 32 ............................. ACGTTGTCATGAACGGCGGGTTGTATCCGGCT 795207 29 100.0 32 ............................. CTCACACTGGTTGCATTCAACGCAACATAGGA 795146 29 100.0 32 ............................. TACAAGTGGCCGCTTCCACAAATTCGCGAACT 795085 29 100.0 32 ............................. CCAGTTTTCCCGTCGTGGTATTTGACCCGCCC 795024 29 100.0 32 ............................. ATGAACCCACCGGAAGTAGGAAAACTTTCGCT 794963 29 96.6 32 ............T................ TTCTTCGACAAAGGCGGCAAGAAGAAGATCGC 794902 29 93.1 0 A...........T................ | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTTGCTTACCCAGCCTACATATAAACTGGCGGGCCTGCCCTTAACCGCCCCACAAAAATTTTCTCGCGCCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGTGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTAGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 823933-822440 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKV01000002.1 Cronobacter sakazakii strain cro780C3-2 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 823932 29 96.6 32 .T........................... GCGTCACTGTTCATTTTGTACAATCCGCTCGA 823871 29 96.6 32 .T........................... GCAGCCGTGGCTAAAGACACTCAGCAGGCATA 823810 29 96.6 32 .T........................... GCAAATGCAGTTTGCTCAACTTGGACTGAAAG 823749 29 96.6 32 .T........................... ATCATTACTGTGCTATGAATGAATTCTTACCT 823688 29 93.1 32 .T..........................T GCAGCAAACCATAAAAAAATTAAAAATTGGGT 823627 29 96.6 32 .T........................... AGATCGGCGTGCTGTTCAGGACGCTTGATACC 823566 29 96.6 32 .T........................... AATGCTGGAATGACTGGGCTTCGGGGCGGTTT 823505 29 96.6 32 .T........................... CGCGTAGCGCTGGCTGATACGGGTAACCCGCC 823444 29 96.6 32 .T........................... ACTCCTTAACGGAATACGCCCCGTCCCCCACT 823383 29 96.6 32 .T........................... TGAGTTGTCGTTGTGCCGCCGCCATCGTCGTT 823322 29 100.0 32 ............................. AGGAATCCACTACATCAGCGATTGGGGTAAAC 823261 29 100.0 32 ............................. AATTTTATGAGTGAAAAACTCAGTAAAAGGAA 823200 29 100.0 32 ............................. TGTCTCCTTTCTCTGGACAAGCACATCCAAAT 823139 29 100.0 32 ............................. CCTGAGCGAGAGCGTCAGGTCAGCAACAACGT 823078 29 100.0 32 ............................. CACGTAATTCACGCGGGCGGCGTATTCCCGAA 823017 29 100.0 32 ............................. GCTAAGGTGCGCAGGCTCCAGCGACATGAAAG 822956 29 100.0 32 ............................. GTTTATCCGAACGTTTAGCCGGGAAGCTGCTG 822895 29 100.0 32 ............................. GGATTCCGATTGTCGGTGTTGGTGCCATCTAC 822834 29 100.0 32 ............................. AAAATTTCGTTCAGAAAAATCGGTATCGCGCT 822773 29 100.0 32 ............................. CGGTAATTGACGGGGCGGTGTATCGGGTAGAG 822712 29 100.0 32 ............................. CCTCGCCAGTATTCACGCATCACACTGGAAAT 822651 29 96.6 32 .T........................... CGCAAAAACGGCGGCCCGGTATCAGCGGGTGG 822590 29 100.0 32 ............................. AAATCAGTTTTGCCGCCCGCTGCGCCCAGCGG 822529 29 93.1 32 .T......T.................... TCGGCGGGATTATTGACGCAGCGACGCCGCGC 822468 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.0 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGCCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGTGAGCTGCGTGAAAAACTGGAAAAAATCATAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTTGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : AACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCATCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGACGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77188-76739 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKV01000013.1 Cronobacter sakazakii strain cro780C3-2 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77187 28 89.3 32 .A..T.G..................... ATACCGCTCGGCGACGAACGAGTCCGGCCAGG 77127 28 100.0 32 ............................ TTGTACTCACCATGCCACGGGCTGCCGTCCTC 77067 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 77007 28 100.0 32 ............................ CGGTACGCGTACCGCGCCACCGCCGTCTTTTC 76947 28 100.0 32 ............................ AGACTGCCAGCCCCTGAATGCTGCGTTTTCAC 76887 28 100.0 32 ............................ AGGTACGCCGGACGCAGCCCCTCTGTGCCCGT 76827 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 76766 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTGACGGAGGCAGAACGCCAGGCGAGGCGAAGGGGTGTTTAACGAGTAAAGATGTCAAAGACGCGGCGCTTAGCGACTGGGACGCGTCTGGCAGTCGATCTATCCGTATCTTATGAGCGG # Right flank : TCACAGCGAATTCCCTTGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCCGGCAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCTCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //