Array 1 387-590 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHG01000103.1 Streptomyces sp. NRRL B-1381 contig103.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 387 29 69.0 32 ACTAC.......GG...........T..C TCGCCCACCTGTTCCAGCTCGTCTTGCCGGAC 448 29 100.0 23 ............................. CCACCGGCGGGAGAGTGCTGGCT 500 29 82.8 33 .................A.......ACTC GTCGCACCACCCCATCAGACACCGCCCCACGGG 562 29 93.1 0 ......................G.....C | ========== ====== ====== ====== ============================= ================================= ================== 4 29 86.2 30 GTCGTCCCCGCGCCCGCGGGGGTAGCTCT # Left flank : AGAATCGCGTCCGCATCGGCGAACGTCAGCTCTTCGACGAAGTAGTGCTCGCGGTGCTCCTGACCACACGCCGGTGTCGGACGGTACTCATCTCCGTAACGACACCGGGCGTGCTCGGCCAGCGTGTTGTGCATGCGCTGCAGCCTACGACGTCATGATCCGCCGGACAGAACCTAGTCGCGCTCCAGGCGCCTGATCCAGTAGCGCGAACTACCCCCGCAGGCGCCGGGACGACTGCCGGGGGAGGGGCTCGGTTCCGAGGGCGAACTACCCCTGCGGGCGCGCGGACGACGGCATGAGACACCAGCTCGGCGCGGTCGCCGGAACTATCCCCGCGGGCGCGGGGACGACGGCTTCCTGGTGGTTCATGCGGCGATCCTCAGGGAA # Right flank : CCAGGCCATATCCGAGGGCGGCTTGACCGCTAGGGCCTGTCCGGTGGATCTTGGTTGCTCCCGCGGGGGTTATCGTCTTGCCATGGGATCAATGGGGGATGATTTCCGGGGCCGTTGGGCGTTCGTGGGTAGGACGCTGGTCAATCGTCCATGGCTGATCGTGAGCTGGGTTGTGCTCGCAATCGTGGCGGTTGCGGCCGGGAAGGTCGTGCCGCAGCCGTGGAGCGCGGGTATCTATCCCGTGGTCTTGTTCGTCGCGCTGCTGCTGTTCTCCCGGGCGTCGACGCAGAAAGAGTGAGCCCGCTCAGGGGCGAAGCCAGAGTCGGATTGCTGCGACCGTGACTGTGCCGTGGGAGACGTAGGCCCTCTTGTCGTAACGGTTGGCGACCGCGCGGGAGTTCTTGAGTCGGTTGATGGTCCGCTCGACCTCGTTGCGTCGCCGGTAGCACTCGCGGTCGAAGCCGGCGGGTCTGCCGCCCGTGCTGCCTCTGCGCCGCCGG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.31, 5:-1.5, 6:0.25, 7:-0.24, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTAGCTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 36228-36504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHG01000052.1 Streptomyces sp. NRRL B-1381 contig52.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 36228 30 83.3 31 .GT.GT.......................G TCATTTCCGAGATCGCGCTCATCGACGTGAA 36289 30 96.7 31 .........................C.... TTCCCGGGCGTGAGCGCTGGACCCGGCAGGC 36350 30 100.0 31 .............................. ACAGCGTGAAGACCGAGCGGTAGCCCGTCGC 36411 30 86.7 31 ...........GTGT............... AGAGCGTGAACACGGACGCATAGCCCGTCGC 36472 30 83.3 0 ...........GTGT.......G....... | CG,G [36489,36500] ========== ====== ====== ====== ============================== =============================== ================== 5 30 90.0 31 GTGGTCCCCGCTCACGCGGGGGTGGTCCCC # Left flank : ACAAGATCCCACCCCACATCCCCAGGGCTACAGAAGACCGATCGCCGGGCACCAAGGAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAGGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGGCGGCGAGCCCACCACCCCCACCCCGGATGAGGTCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAACCCGTCTAACACCTGCCCCAAGAACCCCCGTTGGGCAGGACGGACACACCGCATCCCCAGGACCAGCCCCACAGACAGAGAGCAGAACCGCAGCCCTCCCGCCGAAGCCGGGCCCAGACAGGACCGGCGGCGGGCAGAATGGGCAACAGCCGAACCACACGTGACCACTTTGCGACGGAAGGCGAGATATGCCGGTTCCTCAAGAAGTAGGTAAAAACCGCATTCCCGCCGCCTAAACCCCCAGGTCACGAA # Right flank : CGAGCGGCCCGGGGCCCACTTGGCCCTGACACTGCGCGCCTGCTGTTCGCGCGACCCTCGCCCCCGGCCCGCAGGCATCTGCCGCCCGTCGTACAGCAGAGCGCCCGGTCGCCGTACGAGGGGTACGGCGGCCGGGCGCTCCGGTTCCACGGGTCAGGTCGGGGGAAGCGGCATCGGGGGGACAAGCCGCTTCCCCCGGTGGGAACAGCGCCTGCGGTCGGTCGTCGCGGTCAGGGGGAATCGCGCGGCGGGCCGACCCCACAGAGAGGCCCTGTTCCGGCCTTCCGGGTCCTGCCAGGTCCCGTCGGGCTCGGTATCCATGCTGCCGGGCGGGACGGCTCGGTGGGGCGGGCGAAAGGCCCCGATGGCCGGGTCGTAGGTCCTTAAAAGGTGCATCAGTGATCGAAAACAGCCATCGAATGCGGTCATGCGTGCGGATAGAATCGCCCGATCGCACATGGGGCCGACGGGGAGGCAGGATTGTGGCCAAGGCAAAGACG # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCTCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.90,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 81890-82102 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHG01000049.1 Streptomyces sp. NRRL B-1381 contig49.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 81890 30 93.3 31 ............T................C GGTGGATCACCATGAGGTTGGCGATGCCGAG 81951 30 100.0 31 .............................. CCTTGCGCTCCCACGGGCGGCACAGCGGGCA 82012 30 93.3 31 ..............T..............T TCGAGCGTGGTGTCCTGACGTTCCGGGCCGA 82073 30 90.0 0 ...........TGG................ | ========== ====== ====== ====== ============================== =============================== ================== 4 30 94.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CCGACAAGATTCCGCCCTGCCTCCCCGGGGCGGTGGAAGTCCGTTCGCCGGGCGCCAAGGAACCGATCTACGAAGCCTTCGTCGAATGCACCAACTGTCGCCGTCCAGGCCCACCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCACCGCGCCCACACCACGGGCGGCGACGACACTGCCGCACCCACCCCGGACGAGGTCGCGGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCGACCACCACACCCCTCGTCGCGCAGGCCGGGCTTACCGCACCCCCGGGCCCACGCCTGCGAAAGGTCAGACCACAGCTCTTCCACCGAAGCCGGGCCGATGAGACCGGCGGCGGGCAGAATGGCATCAGCCGAACCGCACGTGACCACTCTGCGGCAGAAGGTGAGATATGTCGGCTTCTCAAGAAGTAAGTAAAAACCGCCTTCCCACCACCTAAACCCCCAGGTCACGAATG # Right flank : AGCAGGGGCAGGAAGTCCAGGACTGCGTCGCCGTGGCCCCCGCGTAGCCTGGGGCTGTGAATGCCGCTCCTGAGGTTCTTGCCGTGCTCACCGACATCCTTGCCGCCGTCGAGGACGGTGAGCGGGGGGCCTTGTGGAATCTCTCCGAAGGCGGGCGGGAGCTGGACGCCAATCTGGTGTGGCTGCCCGCCGGGGCCGAGGTCGCGGAGCATCAGGAGGACGTGCTCGACGTGTTCCTCGTCGTTCTGGAGGGCGGGGGCACGGTGAAGGCGGCGGGCGGCCGTGAGCTGGGGCTGGAGGCCGGGGCCGTGCTCTGGTTGCCGCGTACGTCCCGGCGCGCGCTGGCCGCCGGGCCGGACGGGCTCGGGTATCTCACCGTCCACCGCCGCCGCCCCGGCCTCGCGATCTCCGGGCCGAGTTCGGCGTACGAGGGTGGCGAGGGGCCCTGCATGCTGGACCGGGTCTGCCCCGGGTGCGGGCGGCTGTCGCAGGACTCCGCC # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 103-499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHG01000058.1 Streptomyces sp. NRRL B-1381 contig58.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 103 30 100.0 31 .............................. CACCCTGAGTCAACTCCTGACGGCCCTGTCG 164 30 93.3 31 ............................TC CGGGGGTGATCATCGGTCGGCCACCGGGGCG 225 30 100.0 31 .............................. CAGAAGTCGTTCGCGAACTCGTACGTCTCGT 286 30 93.3 31 ........T....................C GCGAGCAGGGAGAACGCTTCGACTCGACCCG 347 30 96.7 31 ............................T. TCACCCGAGTGACAGGCGTGCGCCGGTGCAC 408 30 96.7 31 .............................G ACCGGCTAATGAGGTACGTCGCGGACGGCGA 469 30 80.0 0 ....CTG.......T....C........T. | T [494] ========== ====== ====== ====== ============================== =============================== ================== 7 30 94.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CGATGGGAACGACGCGACGACATCCACGAAGCCTTCCTCGGCCTCGCCACCTGCCTCATCACTCACCGACACGTCCAACGCCTTTGTTAGGACCTCTTACTCG # Right flank : TGTCCCCAAATCGAGGAGCCTGCGGACCGACCAACGCAGTTGGGGCAGTGAGTGCGGTCGCCCTACCTGCTTCGATGAGGAAATCTACGCGCCCCGCAACGAAGTTGAGCTGACGGTCAACGCCCTCAATAGGCTCCGTTCGGTGGCCACGCGATACGACTAGCGCGCCCACGTCTTCCAAGGAACCTCGCCCGCCGCAACGATCTGGTTCGGGCTTCGGGGGTAGATCCATTATCGCGCTCCGCGGAGGCGCTTGTCACCGTTCTCCGGAATGATCTTTACGCCCGTTATGCACCCATAGAGTTACGGGGATCGAGCACGACATACCAACCTGATGTGGAGTCGAGAGTGGTACATGACGTTGCCGCACTGGCGAAGGAACTCACCGCCATGGCTGCGGCCGATCAACAGTCCTCAGCCCACGCCAACAGCGATGATCCCGCTGAGCAGTTGGTATGGCGCCGGCTCACCGCGCAGCACGGCGACCGGCTCGGTCAGAT # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1658-1870 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHG01000058.1 Streptomyces sp. NRRL B-1381 contig58.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1658 30 83.3 31 .CA.......T.............A....A GGTCCCGGATGTGCCACTTCCGGCGCTGGGC 1719 30 93.3 31 ..A.....................A..... GCGCCACGAGCTGGAGAACTACGCTCTCATC 1780 30 96.7 31 .............................G GGGAATGGGTCCTGCCACCGCTCGTCACGAT 1841 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 93.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : GGACCTGGCCTTCCTGCATGACCGCGCGCGCGTCAATGAGGGCCGCAAGCAGACCTACGGCACGCAGATCGCCGGCGTGAAGGACGGGGCACCAGTTCCGTGGCCCTGCGACGAGCCGGAACGCATGGACGAACTGCGGGCCGAAGTCGGCATCGAACCCTTCGACGAGTACGTTGCCAAGTTCTCAGTTGCCTGACGCCGACCGCGTCCGGCGGGTCATACCCTGAGGCTCACCAGCCATGGGCAAGAGCCCTCGGACGGCATCTCCACCCAGCTCCTCGCGCTGCGGAACAAACGCGCCACACCCCGGGGCCAACGCCTACGGAAGGCGGAGCCTCACCGCTTCCATCGAAGCCGGTCCGGCGAGGCCGGTGACGGGCAGAATGGCATCACCCGAACCACATCCGTGACCGCTTCATTCCGCAGAGCGATGTATGCCGGTTTCTGACCAAGTGAGCAAAAACCGCCTTCCCGTCACCTAAACCACCAGGTCACGAACA # Right flank : TGCTCCAGGTCCGGGCCGGGGAACAGGAGGTCGTGGTCCCCGCACGCGGATTCCCCGCCACAGCAGTCGGCCACAGGCAGGGCATGCCCCGCCGTACGCGGTGGAGGCTGCCCCTCGCCGCCGCCTACGAACGGGACCGGCGGTCGCCCGTACGTCACCGCGCCCAGCGGACTACGTCGCAGGTGCCGGTTGGCTACCGTCTTCCGCCTGATACGCCCCCGGGGCCCGCTGGCTAGCGTCGTCCTCATGCGTATCGGACTGCTCGGCACCGGAAATGTCGCCCGCGCCCTGGCCCACGGCTGGCGCGCCGCAGGGCATGACGTCCTCCTCGGATCGCGCCACCCACAGGAGCGGGGTGACCTCGGTCTGCCCGTCGCGGGGCTCGGCGAGACCGCCGCTCGCGCGGACGTCCTGGTCAACGCCACCCCCGGTGGCGTCTCTCTGGACCTGCTCCGCTCCATCGGAGCGCCGGTCCTGGCCGGCACCCTGCTGATCGACGT # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 25628-27062 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHG01000058.1 Streptomyces sp. NRRL B-1381 contig58.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 25628 30 96.7 31 ...........T.................. GTGCCTCCGCCACGTGGGCGCCGCCGCGCAC 25689 30 93.3 31 ....A........................A CTCCGTGTGCGGGCGGGGGCGGGAATCCCCG 25750 30 96.7 31 .............................C ATTCGCAGAACGCGGCGGGGAGGGTGACGTC 25811 30 96.7 31 ..............G............... ACTCCCTCTACTGCGGGCTGGCCCAAGGCGA 25872 30 93.3 31 .........................C...C CGTCGTCGAACTCTGCCACTTCGGCGTGCTC 25933 30 100.0 31 .............................. AGGCATGCGTACTTTCATCCCGACCGGCGGA 25994 30 100.0 31 .............................. GGGCCACGTACCGGACGCGCGGGTGCATCCG 26055 30 96.7 31 .............................T TCTGGCACGCCTCCGGGATGCCGAAGGAGGG 26116 30 100.0 31 .............................. TGCTCTCGTCGGTCGGCAGCCCGAACACGAG 26177 30 96.7 31 .............................T TCTTGCTCGGGCGCAAGGGGTTCCGGGTGTC 26238 30 100.0 31 .............................. CCGTGTTCGCGTTCGTGTTGGGGGTGGCGTT 26299 30 100.0 31 .............................. TGGCGTCCGAGGTCGCCGCCGAGGACGGGGT 26360 30 96.7 31 .............................C TGCACGCGTGGCGGGCCACGAACCCCGCTGA 26421 30 100.0 31 .............................. CGTACCGGGTCACCTTCGTCACCCGGCACTC 26482 30 96.7 31 .............................T CTGCGGCGGTGCGGCCCCGGCGGGGGAACCA 26543 30 96.7 31 .............................C GGCCCAGGGCTCGCAGTACCTGCGACGGGGA 26604 30 96.7 32 .........................C.... ATCGTCTGGCGTCCGATGTGGCCCGGCATCAG 26666 30 100.0 32 .............................. TCGAGCCGGTCACCGTCGCCCTCACCGAGCTG 26728 30 96.7 31 ...........A.................. TGCCCTAGATCGGCTGTGCTGCGTAGTGAAA 26789 30 96.7 31 .............................T TGACGCGAAGAGCGACCTGAGTGACGGCTAG 26850 30 96.7 31 .............................C GGGATGCCCGCAGGGTCCTGGTGGCCTGGCT 26911 30 93.3 31 ............................AC TGACGTTCCCCGGAGGCCGTGCCCGGACCCG 26972 30 96.7 31 .C............................ TGGTCTTCCGCCTGGACATCCTCGACATGAT 27033 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ================================ ================== 24 30 97.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CACCGACAAAATCCCACCCCACATCCCCACGACGACAGAAGACCGATCACCGGACACCAAGGAACCGACCCACGAAACCCTCCTCGAATGCACCAACTGCCGCCGCCCAGGACCGCCGCAAGCCCTCCCCGACGGCCTCTGCCGCTCCTGCCACCACGCACACACTCACGACGGCGAGTCCACCACCCCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTAACCCCTGCCCCAAGAACCCCCGTTGGGCAGGACGGGCACACCGCATCCCCAGGGCCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGGCCCAGATAGGACCGGCGGCGGGCAGAATGAGCATCAGCCGAACCACACCTGACCACTTTGCGACGGAAGGCGAGATATGCCGGTTCCTCAAGAAGTAAGCAAAAGCCGCCTTCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : CGCTCACACGGGGGTGGCCCCTGTGCCCCCGAGTGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGGCCCCGGCCAGTCACCGTCAACCCGAACTCCTCCGCACCGGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCTTCCCACAGCAGCCCGACCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCACTCGTCACCCACACACGCACCCCGCCACCGGCGACACTCTGGTGAATCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCAGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCGTGCAGATCGGGTACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCACTGC # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 32371-32645 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHG01000058.1 Streptomyces sp. NRRL B-1381 contig58.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 32371 30 83.3 31 TG.TC........................T CACCCACGAACTCGTCTGCTTCGACCCGTCC 32432 30 100.0 31 .............................. GCTCTTTCAAGTCGGCCGACGCGCGGTCCAT 32493 30 100.0 31 .............................. GTTCTGCGGTGGGGACCGACCCGGCCGCGCG 32554 30 100.0 31 .............................. ATTCTGCGGTGGGGACCGACCCGGCGGCGCG 32615 30 83.3 0 .........C...........CC.....AA | C [32640] ========== ====== ====== ====== ============================== =============================== ================== 5 30 93.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CATCACGCAGTTGGGCAAGCTGGGCGGGGTCGGTCACTCGCTCGCCCTGAACGAGCACGTCGGTGGAGCCTTCAACCTCGTAGAGGGTGGGGCCATCCCCGTCGTCACTGGTGGTACCGAGGAACCTGAGAACCGTCATGACGCCCTCCGCGTGCACTGAGTGGAAGCCCAGGATGCGATGGATGGTGAGGGGGTGTCGCTGGATTGCGGCGCGGAATCGCAGATCGCCGAGTTGCAGGGGAGTTGAGCGCAACTGGCAACGGCAGCACGGACAAGCGTAAGCAGAAGGGATACCACGCACACGCCAGGTACAACACAGACGGAGCACGGCGCCCCAGCTCTCACGCTCAAGCCGGACCGGCCGAACCAGCGCCAGGCACAATGACACCAACCGGTCGGCACATGCGTGACCGCTTCACGCGAAAGGCGAGAAATGCCGGTTTCCCAAGAAGTAAGCAAAGACCGCCGACCCGCCACCTAAACCCCCAGGTCACGAAGGG # Right flank : ACCTGGCGTCGCGTCTCAGCCGTAGTTCTGCCCATGGCATACAGCCGAGCTGGAAGGTTCAGCGGTCGCGCTCGGCCTCGGCGAGCCGTCGCTCCCGGGTTCCTTGAAGCCAGATCAGGTCCTCCAGTTCCGGGTTCTGCTCCGGAGCCGGGTTGTCCGTAGGCGCGTCGAAGCTCATCGGCAGGTCCTCCAGACACGGCCCAGCCTTGTGGCCGTCGAGCAGGCGGCCCCCGCTCGACAGGCGCAACACGTCAGGGTGTGTCCAAGGAACACCCGGTACGCGGCCTCGGCGGCCCGGTCTTGTCTCGTCATCATGAGCGGTGGCCCTTCCAGCAGGCTGTACAGCAGCGTGGGTACCACCGGATCGCGGAGCCGAACACCGTGACCACGCGCACGCCGAGGTCCTCCGCTGTCGCGTTCGACAGTTCGACCGCGCACCAGACGCACTGTGCACCCCGCTGCTGCTCGGCGGACAGGTCAGCGGGCTCCGGTACGGCGTT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 337-124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHG01000093.1 Streptomyces sp. NRRL B-1381 contig93.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 336 30 100.0 31 .............................. CAACGTCCGGAGGTCACTTCTTCCTGGACTG 275 30 96.7 31 .............................G TGTCGACGCCGGTTGAGTTTCGCCAGACGAT 214 30 100.0 31 .............................. ACTTGCCCAGTGAGTTGCCGTCCCCGGCCGC 153 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =============================== ================== 4 30 98.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CGACAAGATCCCGCCCCGCCTCCCCGCCACGGCAGAAGTCGACTCGCCGGGCGCCAAGGAACCCGCCCACGAAACCCTCGTCGAGTGCACCAACTGCCGCCGCCCAGGCCCCCCACAAGCCCTACCCGACGGCCTCTGCCGCCCCTGCCACCACGCCCACACTCACGGCGGCGAGCCAACCGCACCCACCCCAGACGAAGTCGCCGCCGTCAAAACCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTAGCTCCCCAACCGCCGCACCCCTCGTCGGGCAGGCCGGGCACACCGCACCCCGGGGCCCACACCTGCGAAAGACAGAGCCGTACCTCTTGCACCGAAGCCGGGCCGACCAGGCCGGCGGCGGGCAGAATGGCATCAGCCGAACCACACGCATGCCCCCTTTTGCGAAGGAAGGCGAGATATGCCGGTTTCTCAACAACACAGCAAAAACCGCCTTCCCACTACCTAAACCCCCAGGTCACGAAGGG # Right flank : AGAGGGGTGCACGCACTTTGCGTGCCTTAGAGGTCCTAACAGAAGTTGTTGATCATGTGACTGTCGGCCTGGCTGCTCGTTGGTCCGTTCGTGGCGAAGAGGAACTCCCGGCCGTGGATCGTGT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4898-4563 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHG01000093.1 Streptomyces sp. NRRL B-1381 contig93.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4897 30 100.0 31 .............................. GCAATTACCGTCAGCATGAAATCCCTCCCTT 4836 30 96.7 31 .............................G TGGCGGTGCACACGCCGCGCGCCTTCGTCAA 4775 30 100.0 31 .............................. AGGGCGGATACCTCGTCCCGTTCCAGCTCGA 4714 30 96.7 31 .............................G TCGCCGAGTACGTCACCGTCCCGAAGGCGGC 4653 30 96.7 31 .............................A TCAACGATTCGTATGTTCGCCTCGGCTTCGT 4592 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CTACGGGGCACCCGCGGTTGAAGGCCGCGAGTGGTGGCGCGAGAGTCTGGAGACGCCGCCGGAACGGTCTCGAACCTTCTCCTACTCCGAGCTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGGTGGCGGACGCCCTCTCACGGGCTCTCCTGGCCGGGCGGCCCGAAGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTAGGAGAGCGTCGGCCCTTCCCGGACTCGCCGGTCTACGCCGTGATGCTGGCCGACCTACCGCTTGACGAGAGGCACGGAAGGTAGAGCCGCACCTCTTCCACCGAAGCCGGGCCGATGAGACCGGATGGTGAGCAGAATGGCATCAGCGGAACCACACCTGCGACCACTTTGCCCCGGGGAGCGAGATATGCCGGTTTCTCAACAACTTAGTAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : CGAGACCACGTTCACCGCCCGCTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGTTGCCGGGGTGGTCCTCGTACAGTCCGCACCACTGCCGGTGGTTCTCGCGGAGGTGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACGCGGTGGCCGCCTGTACTCGTGGTCCACAGGAACCACAGGCTCGCGGGCGGTTCCGTCTCGGCGGTCCACAGGCGGGCGGCGTGTTCGGTGGTCTCGTCGTGCTCGCCCAACTCGCACAGCACATAAGGCTTGTCGTCCAGGAGGTCTTCCGCATCGTCGGGGCCGTCGTCCATGGAAAGCAGGGCCGGGAGTGCTTCGCCGGGCGGGAGATTGGTGATGGCGGTGCATTGCAGCACGGGGGCGGGGCTCCCTCTCGTGAAAGTCCATGGAGGTCTGCGGAGGCCGGATCAGCTCGTGCTGAGCCCCGCTGGCAC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //