Array 1 5065-4061 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUJZ010000218.1 Saccharopolyspora sp. 6M contig_00218, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5064 29 100.0 32 ............................. CCGTTCGAGCTGTTTCCGGCGCGCCGCGCGCT 5003 29 100.0 32 ............................. TCCGCTGGTACGTCCGGTGGGGTGTTCGAGGA 4942 29 100.0 32 ............................. GCGGCGGCCCGCTCGATGCGCTCCAGGTCGGC 4881 29 100.0 32 ............................. CCTCAGCTACGTCTTCAGCGTCATGGCGCTGT 4820 29 100.0 32 ............................. GTGAGCTGGTCGTCGTTGGTGGCCGACCAGTT 4759 29 100.0 32 ............................. TACCGGCAACAGACTGTTTCGGCGGCTTCTGG 4698 29 100.0 32 ............................. GAGATCGGGTATCAGGTCGGGGTCAGCACCGC 4637 29 100.0 32 ............................. TACTGGACCCGGCTGCGCGCCGGACTCGGTGC 4576 29 100.0 32 ............................. GATCGAGGAGCTTGGGCGACACGTAGGACTCA 4515 29 93.1 32 ...........G..T.............. GGCGTCGACGGGATCTGCTCGTGGTGGCGGAC 4454 29 93.1 32 ........TC................... GGGCTGTTCGGGCGCCGAAACGACCGGCGCAA GT [4435] 4391 29 93.1 32 ...........G..T.............. CGGCCGTCACCGCGACCGCTGCGGGCCTGCGT 4330 29 96.6 32 ........................G.... CCAGTGGCCGCGCGAGTTCCTCCCGGAGCCAC 4269 29 96.6 32 ........................G.... TCCCGTCACGCGGGGCGGATCGGCCGGTGGAT 4208 29 96.6 32 ........................G.... ATTTCCCCGGTCAACCGCAGGTGCTCGCCGGG 4147 29 93.1 29 ........................GC... TCACGGCACCGGGTTCTTGTACAGGTCCA 4089 29 82.8 0 ............A........A.AGC... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 96.8 32 GTGCTCTCCACACGCGTGGAGGTGATCCG # Left flank : CCCCTGTTCGGTATCGACGCTCACGACACACCTCCATGAAAAACCCGCGATCCCCCGCACGCGGCGCCCCGGGCCCCCCCCCCCGGGGGGGGGGGGTTTTTTTCCCCCCCCCGGGCCCCCCCGGGGGGGCCCCCCTGCCAGCTGAATGCAAGCCCCGGCCAGGCCGGGGGTCGCCGGGCGTGCGGCTGGCGCCGGTCCCGGCGCCCCCCGGCGTCCGGGGCGCGAGATGGAAGGCAGGCGGCCAGGAACCACGCAGGGGCCGCGTGATGCTAGGAGCAGAGATCTCTGCGAGGTGGTCGGCTGGGTGATCTCACAAGCGGTTGTGGTCGCTCTATCAGGGTGGTCGGCTTGCCACTTCCTACGGGCGGCCTCGACTCGCCTGGCGTAGCGGGTTGCCTGGCCGTGGTCACCGGGAACGACCCTTTCCGTGCGCTACGGTCTGCGTGATGCCGCACCTTGAAAACGAACAACGGCCGCTCTAAAACCCCAGCTCGCGAAGG # Right flank : GATGCATTTGCCAACGAAGTGCCAACTATCGACGTTCGACGACGTCAGATGACGGCAGGTGACCCCAGCTCGGATCACGGCGTTCACGCAGGTGACCGGGGTTGTCGCCAAGCGACGGAAGATGTCGAGCGACACGGACACCAGAACAGAAGGTTAGGGGTTCGAATCCCTTCGGGCGCACGTCTGGTCGAGACAGCTGGAAACCCCCTACTTAGTCGCAGGGGGTTTCTTGCTGTCCGGGGTCGGGTGATGGCGATCGGGCCTCCCCGCCGACCTGATCGCTCTGCCACCGACCGCACCGTCGAGCACGTCGGCACCGACTCCCGTCCCGGCTACGGCCGCGGGAGCAGCACCGCCACCTCGGCCATCCCGTCCAGGAGCGCCGGCGGGAGGTTCCCGCTCATCGGTGCCGCCTCCGCTCGCACGAACAGGGTGCCCTTCGCGGTGGACTCGTAGTGCTCGCCGGTGAAGGACACGCCCCGCGCGGCGAGGACGCTGCT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACACGCGTGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4884-5290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUJZ010000301.1 Saccharopolyspora sp. 6M contig_00301, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 4884 36 83.8 44 ....T....GCA.................-...A... ATGGCGGGGTTCGACGAGACGCCGACTCCGTTGACGCTGTGCTC C [4902] 4965 37 97.3 36 ............................A........ CAGGGTGCTGACCAACATCGGCTGGCGCGCGATCGG 5038 37 100.0 34 ..................................... TGCTCGGGATCCGTGCTGACCATGCCGCCATCGT 5109 37 100.0 34 ..................................... CGGCCGCCTCGGGTGAGCCGAGCTCGGCGGGGCT 5180 37 97.3 37 ..................................C.. GGGCGGGCCGGGTGCCCCCCATGACCGGGCCCGCGGC 5254 37 81.1 0 ......C.......GC..G.....C....GG...... | ========== ====== ====== ====== ===================================== ============================================ ================== 6 37 93.2 37 GCCTCGATGAAGGGCGGTCCCCGGAGGGGACCGCAGG # Left flank : AGGCCCGGCGGTTCCCGGTCGGTACAGTGATCCGGCCGAAGCGCGGCCGATCTTCGGACGGCCGCGCCCGGGGCGCATAGCTCAGCGGAAGAGCACTTGCCTTACAAGCAAGGGGTCGCTGGTTCGAACCCAGCTGTGCCCACCGTGCGAGAAGCCCGCTGATCTGGATCGAATGTCCAGGTCAGCGGGCTTTTTGCTTGATTGTGGTTGATCTTGTTCGTCTGTCCTTTGTGGTCCGGAAGTGCTGCCCGGGGCGCTGATGGGAGGATTTTGGGAGGATTCGTTTTGCGCTCCTGTGTCCGGCCGTGCCGGGCGGGTCATCCTGGGTTGGTTTCCAGCTAGCCGGTCATTCGGGGCGGGCTGGTTTCCCTACGCGCCATCGTCGGGCTTCTTGGAGTTCGAGACCATTGGCGGCCCCCGCGGGGGGCTTATGAAGGGCGGCCCCTGGGGCCGTAGGTGCACCCGCTCGGCAGTGATTGCCGCCGCCGACCGATCGCGAC # Right flank : CGGGCGCCGCCA # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCGATGAAGGGCGGTCCCCGGAGGGGACCGCAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.50,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [8-8] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 5737-6300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUJZ010000291.1 Saccharopolyspora sp. 6M contig_00291, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 5737 36 83.8 37 C...-...................CT...A....G.. TCCATCCCCATCTCGTTGAGCATCGGGGTGCGGATCC 5810 36 78.4 34 .......C....AA.C.-...G....A.........T CCTGAAGCTTGACGTTGCGGAACTGCTGCGGCGG 5880 37 100.0 43 ..................................... CTGGGTTCGGGTTCGGGTGCAGGTGCACGGGGGTACGTCCGCG 5960 37 100.0 42 ..................................... CTCGACGTGCCCGGAGCCCGCCGCTACCTCGACGAGCTCCGG 6039 37 100.0 37 ..................................... GTTCGGCGGCCTCCATCCTCGAGGTGACCGACGGCTA 6113 37 100.0 40 ..................................... TGCCGTGATCGGGTTCCAGCGCATGTTCGGATCGGACCCA 6190 37 97.3 37 ...........................C......... TTCACATCCTCCGGACCACCCCGGTCCTCACTACCCG 6264 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 8 37 94.9 39 GCCTCGATGAAGGGCGGTTCCCGGAGGGAGCCGCAGG # Left flank : CACGGTCGCTGCACCGGCATCGTCGAACTCGACGGTATCGCAGCGACCGATGATGCCGAGCTGGTCGTGGCCCACCTCGATCCCCCGCACATGCTGGGGACGGGTGCCGGCCACGTCGTCGGTAGCGGCGTGTTCATCCTGGCCTACCGCGACCTGATGAGTGTCGGTGCGCTCACCGACCGCCTCCAACCACGCCCTGCGCGGGCAAAAGGAGTGGTGGGCGGCAAGACTGATCGGGATCGGCTCGCCACGGCCCGAATCGGCAGTCATCCCCGCAGGGTGCGCCGCAGTGACGAGAACAGCGACCGACACTGTGACAGGCGGGACGCAACGACAGCGATGATAAGCACGAGGTCACCGTGAAGACGTCACAAGACATCCCGGAGGGACTCGCGACGCCCTACGAGCGAGCAGGATGGATCGCTGCTTCCGCTGAAGGGCCGTTCAGAAGGAACGGCAGGAAGAACCTCAAGATGCTAGCCAAGCTGAAGCGTTCCCAA # Right flank : AGGGTCGTTGAGGCGGGGGTACTGCGCTGGGGTTTTGTCGCTCGCTGCGAAGGCTGGGCTTCGAACGCGTTGTTGTCGATCATATTAGGCCCGTATAGCGCTGCGCTGGCAGCGTGACCTGCATTGATGGGATGCGAAGGGTCTGTGGGTGGCGGGTGTGGTGGTGGAGCCTTCGCGGCCGCGAGTGAGCACGGGGTGTTGTGAGCTGTCAACGGTCGGTGGTTCTTGACGTTGGGATCTTGGTGGGGTGGAGGGTGGCGTGTTGGGTGCGGCGTTCGGGGGCTTTGTCGGTGCCGTAGCGGTGGATGGGGAAGGTTGCGGTG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCGATGAAGGGCGGTTCCCGGAGGGAGCCGCAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA //