Array 1 988328-988843 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051358.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM 28322 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 988328 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 988389 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 988450 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 988511 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 988572 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 988633 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 988694 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 988755 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 988816 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1005101-1006764 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051358.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM 28322 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1005101 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 1005162 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 1005223 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 1005284 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 1005351 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 1005412 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 1005473 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 1005534 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 1005595 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1005656 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1005717 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1005778 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1005839 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1005900 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1005961 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 1006022 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1006083 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1006144 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1006205 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 1006266 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [1006308] 1006308 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1006369 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1006430 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1006491 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1006552 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1006613 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1006674 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1006735 29 96.6 0 A............................ | A [1006761] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //