Array 1 453820-455312 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKO01000001.1 Salmonella sp. S101_03634 NODE_1_length_579486_cov_170.429, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 453820 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 453881 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 453942 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454003 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454064 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454125 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454186 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454247 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454308 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454369 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 454430 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 454491 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 454552 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 454613 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 454674 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 454735 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 454797 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 454858 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 454919 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 454980 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455041 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455102 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455163 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455224 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455285 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471444-473347 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKO01000001.1 Salmonella sp. S101_03634 NODE_1_length_579486_cov_170.429, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 471444 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 471505 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 471566 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 471627 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 471688 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 471749 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 471810 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 471872 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 471933 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 471994 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472055 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472116 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472177 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472238 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472299 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472360 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472421 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 472482 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 472543 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 472604 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 472666 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 472769 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 472830 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 472891 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 472952 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473013 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473074 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473135 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473196 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473257 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473318 29 96.6 0 A............................ | A [473344] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //