Array 1 3974763-3973765 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP039318.1 Enterobacter cloacae strain Effluent_2 chromosome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	============================	=======================================	==================
   3974762	    28	 100.0	    32	............................	CTGTTTTGGCCGCCACAAATGGCTCAATACAA       	
   3974702	    28	 100.0	    32	............................	GGCATCATCACTTAAAATCACCGTGTAACGTT       	
   3974642	    28	 100.0	    32	............................	CTGAGGTGAATTTGCATCCGTAGCCGACGTCT       	
   3974582	    28	 100.0	    32	............................	TGCAGCGGTTTTAATAAATGTTCACGTTCAAC       	
   3974522	    28	 100.0	    32	............................	AGCAGCTGAAGCCCGAGGGCGAAGAGCTTGAC       	
   3974462	    28	 100.0	    32	............................	ATACCGGGTGCGCAAGCGCACGCCCGAACGCC       	
   3974402	    28	 100.0	    33	............................	TGGTTGGCACGGTATCGCCGCCAGCGGAAAAAC      	
   3974341	    28	 100.0	    32	............................	CTACGCCAGAACCGATTTGCCCAGCTCGGGTT       	
   3974281	    28	 100.0	    39	............................	CAGGTGTGAGCAGTACGGCATACGGCATATGGCACATGT	
   3974214	    28	 100.0	    32	............................	ATACTTTTCGCTCTTGCGACGTTGTGCATTTC       	
   3974154	    28	  96.4	    32	........T...................	TTCGTCACGCGCCCAGGACATCGCGGAAGGTC       	
   3974094	    28	  96.4	    33	........T...................	ATATATGCGCCAGCGTAAGACCACGACAAAGGA      	
   3974033	    28	  96.4	    32	........T...................	GCCTCCGGTACGCCCGGCACCAGCAGAACACC       	
   3973973	    28	  96.4	    32	........T...................	AGCCATCAGCGAAACAAATCGCCCGACCATGC       	
   3973913	    28	  96.4	    33	........T...................	TTAATCCAGATCGACGTTTTTACTGCCGAATAT      	
   3973852	    28	  92.9	    32	....GT......................	GGGCAAAGACAGCTGCGCTAGCTCTGTGCGGA       	
   3973792	    28	  85.7	     0	.........T..G..A.T..........	|                                      	
==========	======	======	======	============================	=======================================	==================
        17	    28	  97.7	    33	GTTCACTGCCGTACAGGCAGCTTAGAAA	                                       	       

# Left flank :   TTCCCACAAACGCAGCCCGTATGCCGCTGTCTCGGAGCATATCTGGAAGAAGTGAAAACCGGCCTCACAGAATCAATGCGTGATTTTCAGGTAGTGGAATTTGAGGACGACGCGGAGCAACCGCGACAAAAAGAGTGGTTGCTGGAGGATACCGAAACGAAATGCGACTACTGCCGGGCGTTAAACCATGTGCTGCTGGTGTCGCATGTTGACCGCGATATGTTGCCGCACCTGACGGGACTGCTTCATGACATTACGCATTCAATGGCGGCAGATGTCTTTGCACCTCAACCTTCAGAAAAGTTAATGCTCATTATTTCCTGAGTGCGAGCTGAGGCATCGGGGAAGATCCACTGACGCCAATGGTCTAACCCTTTTTTTTGATGTTCACGTAAATCATTGATTTATATGGTTCGGATTTACGTTTCAGAAAAAAAGGTTTTATGCGTAAAAGTTGATTATTTTCTTTTCTAACAATAAGATGGCGTTGTTTCCTTTCA
# Right flank :  AATGAACAACATCGACAAACAGGCGCTACACGGTTCACTGCCGCACAGGCAGTACAATTAAAACCAATCCTCTGAAAGATTCATCCCACCTATATAAAAGTTAATACTATCAACACCACACTCTCTATTTTTTACAATAAATAAAAAATAATTCACGAACAAATTATATTCTGGTGAATATATTATTTTTAAAAATAATATTTCAAAGCAAAAAAGTAATTCTTCGCTAAATTATCACTGCAATTACTATTCATTTGATACCCATCACATTTGTTTTCATCTCATCTACGATAACATACCGCACATTCAACACATTGAAATAAAAGCCCTTGCCATGCCCGTCAACAGCATCACTCCAACAGACTTAAAAACTATTCTTCATTCTAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGTATTCAGGTGAATGGTGGGCGCGTTGAATATGTCACTCAGGAAGGCAAAGAATCGTTTTACTGGAATATTCCCATCGCCA

# Questionable array : NO	 Score: 6.15
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGTACAGGCAGCTTAGAAA
# Alternate repeat :   GTTCACTGTCGTACAGGCAGCTTAGAAA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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