Array 1 137056-135355 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG665866.1 Shuttleworthia satelles DSM 14600 Scfld0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 137055 33 100.0 33 ................................. AGTGGATGGGATCATCAACACGGTCCGCAATCT 136989 33 100.0 35 ................................. AATTTCAAGGGCATCGGCATTGATCCTCATAACGC 136921 33 100.0 33 ................................. TGATTGAGTGTGTAGGCACAGGGACGCCTTCTG 136855 33 100.0 33 ................................. GCATCGGCACTACCGTGTGTCCGATTGTAGTCG 136789 33 100.0 34 ................................. TTCCGTCACCATCTGACCAATCTGTGTCTATGAC 136722 33 100.0 33 ................................. TCTATCATGAACAGGGACAACGTGATCTTTGTT 136656 33 100.0 34 ................................. ACAGGTCGGTATCGTCCTAAATAAATTCATTGAT 136589 33 100.0 34 ................................. TGTCGGCTCTGCCTGCTGCTCGGCAAAAAACTTT 136522 33 100.0 35 ................................. AAACAGGGAGACTGAAAATGAAGATGATTCACAGT 136454 33 100.0 34 ................................. GGCCAAGTGGCCGGACACGTCACTGATCTCAATG 136387 33 100.0 33 ................................. GAATACAAGAAACGGATAGCCAGCGGAGAGGGC 136321 33 100.0 33 ................................. AGAGTGAGAGCGGGCTAATCGTGCGGCCGGCTC 136255 33 100.0 34 ................................. CTCTGCAAGGATCAGTGATTCAGGATGGCCGCAG 136188 33 100.0 34 ................................. TAGTGAATTGAAACGACCTTGAGCATCAGAAATA 136121 33 100.0 33 ................................. TTATATCCGATATACAGCCCATCGACGGACCAT 136055 33 100.0 34 ................................. ACGAGGAAGGCTTTTGAGAAAGGGCACTGGGACG 135988 33 100.0 34 ................................. ACGGACGCATCAACAAAGAGATACCGCTATCAAG 135921 33 100.0 35 ................................. GTGAGATCATAGACAACGCGGTGGGAGAGATCGAG 135853 33 100.0 33 ................................. GCTGTGGATGAAAAACAGGCAGAGCAGATTTTA 135787 33 100.0 34 ................................. ATTGAAAACGAGTAGTCTAATGTCTGGCGGTCTC 135720 33 100.0 34 ................................. TATCTTAGTTGGACAATATTTTTTAGACGTGAAA 135653 33 100.0 35 ................................. CAATGATTGAGACCGCAAGCTCCCTCCCGTCCAAC 135585 33 100.0 33 ................................. GTACATGGGTATTTAAGACCGATGCCAAAGGAA 135519 33 100.0 33 ................................. AGATTACGAGAGCATTAAAGGACAAATGATGGT 135453 33 97.0 33 .............T................... TTCGGCATCCACTCCCCCTCACGTGTTATGGCG 135387 33 93.9 0 .A...........T................... | ========== ====== ====== ====== ================================= =================================== ================== 26 33 99.7 34 GTCGGGTCCCTCACGGGACCCGTGGATTGAAAT # Left flank : GAATGTAAGTTTCCCTTTAATCATGCCGCCTTCTGTCTTAACAGTGATATATTTCAGTCTTTCATTTTTGCTGACTTCAGACGGCTCGCGGCAAAAAAAGCGCTGGCTTCCTCCAGGAACTCGTTTTCTTCTTTAAGACGACGAATTTCCTTATCCTGATCTTTGACCTGCTTACGTAAGGTGATCAGCTCCTCATTCAGGGTCATAGCACTTTTGGGGGTCTGGGATCCCGCTCCAAGATCCAGATTTCCGAGCCTATTAGCGCGTATCCATGTATAGAGCGTGTTTTTGGGGATGCCTAGTTCACGTGCAGCTTTTGCCTGGCCAATCTCTTTTGCCAGCTTAACTGCCTGGATTTTGTACTCCTGATCGTACTGTCTGTTAGTTGCCACCGTAAACGCCTCCTTATTCTCTTAAATTATAATGAAATCCTTGAGAATAAGATGTCAACTTTATTTATACAGCATCACAGTGTAATCTTCGCCGTAATGGATCTTTTC # Right flank : GCTTTGACAGACGATTTGATGCTGTATAAATAAAGTTGACATCTTATTTGCACCTTCTACAATGGCAAAATCACCTGTCCAGAAGAAAACGGATAAACGTGATTCCGAAGCGTTTGCCCGGTGCCTTGCCCACCATTTCTACCATGAGGTCTATGTGCCAACAGCTGATGAGGAACAGGTCAAGGAATTCATCCGGATGAGGGACGACCACAAGCTGGCACTCAAGAAGGTCAAGCAGCAGATCCTTGCCTTCTGCCTGCGCCGTGGGTTTGTTTATCCCGGTTCGGGGAGCCATTGGACTGTCGCCCATCTTAAATGGCTGCGCAGCCTGGCACCGGAAGCACTGTATAAGTAAATCCTCACCGAATACCTGGCAACCTATGACAAACTTACCGATATCCTAGGACGGATCGACAAGCGGATCGAGGAGCTGGCCAGCCAGGATGCCTGCCGTGACAGCGTAAAGAAACTCTGTTGTTTCCTCGGCATCAAGACACAGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGGTCCCTCACGGGACCCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGGTCCCTCACGGGACCCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 140032-138461 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG665866.1 Shuttleworthia satelles DSM 14600 Scfld0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 140031 33 100.0 34 ................................. GTAATCTTCATGTTCATGACTTCCTTTCCTTGAT 139964 33 100.0 36 ................................. AGGCGTCTGTGATCCGGAAGATGCAGGAACGGAAAG 139895 33 100.0 33 ................................. ATTTTGTACCTCCCAATAGGGAGATTTTACAAC 139829 33 100.0 34 ................................. AACTGTCGCTCATGGATCTCTACCAGCTGGAGAA 139762 33 100.0 34 ................................. ACATTTGGCACGCTGATAGCGAATCGTTAAATTT 139695 33 100.0 33 ................................. TTTTGCGTGGAACGCCCGGAAGTGGCAAGTCAA 139629 33 100.0 34 ................................. ATATGATCTCGTCTCTTGACGAAATTATGAACTA 139562 33 100.0 37 ................................. TTTTATGAATAAGGGAAAGAATGGTGAAATCTGTAGG 139492 33 100.0 32 ................................. TCAGACACATCACAGTGTCGATATCCGCGAGC 139427 33 100.0 35 ................................. ACGGATACTGATGATAAGTCCTTTTTGCCCAACAG 139359 33 100.0 34 ................................. TACTTTACGTGTTAAAGTACACCCATACACGGAG 139292 33 100.0 35 ................................. GGTATAACGTAAGGCAGTTTATTACTGGCGGAGCA 139224 33 100.0 35 ................................. GTCCCTCTGATGTGTAAGAGATGCCTGCCGTCAAT 139156 33 100.0 33 ................................. ATCAAGCTTGAGACGGAGATCGGGCGCTTTCTC 139090 33 100.0 32 ................................. AATCGAGTCCGACGATATGGATCTGGACAAAC 139025 33 100.0 32 ................................. AATCGAGTCCGACGATATGGATCTGGACAAAC 138960 33 100.0 34 ................................. GCTCAAGCAAAAGCAGGATCTTTTAGGCGAGTCC 138893 33 100.0 33 ................................. GATAGTCAGTACGAGTATGCAAAGGGGGTGATT 138827 33 100.0 34 ................................. AAGCGACAAAGACAAAGCTTGATGCCTTGAAGCA 138760 33 100.0 34 ................................. GATCTGGACTTGATGCGATCAAAGGCTTTTGGGC 138693 33 100.0 33 ................................. GTCCCTTGTATCGGCGGTGCAGACGAATCCTGC 138627 33 100.0 33 ................................. GCGTGAGGATAGCGAAAGCTTTGACAATGCGGC 138561 33 100.0 35 ................................. GGGATCCCTTGGGGCTAACTACCCCAAGGATGATC 138493 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 24 33 100.0 34 GTCGGGTCCCTCACGGGACCCGTGGATTGAAAT # Left flank : TTTGTGTGGAGGTGATGTGTGTGCTGGTCTTAATAACATATGATGTGAATACAGAGACTCCTGAAGGAAGACGACGACTGCGGAAAATTGCGAAAACCTGTCAAAATTATGGACAACGGGTCCAGTGGTCCGTGTTTGAATGTATGGTAGATTCAACACAATATCGAATGCTTAAGGGCATATTATGTGAACTGATGGGAGAAGATGATAACATCCGCTTCTATAATCTGGGTAATTCTGGAACAACCCGTGTAGAGCAGTATGGTAAACATAAATCCTATGATGCCGAGCATGATTATTTATCAATCTAAGTTGTGTGTGCGAACATATAGTTCACATAAATTTGCTGGGATGTTCGCACATAAATAAATGACAATTTAGATAATATATAAAGTAATCTTTTGTGGATTATTACTTATTTCCTTTCTTGACTTTATGTAAAAGAAGGGAATTGTCAATCATGTATAATTTTCTCATCTATATTTTTGTACATGATTGCG # Right flank : ATCAGTGATATTGTCAATAATGGTTGACAGATTTTCCTCAAGGATTTACAACCCTAAGCTGATTCCTGTAAAGATGAATAGTATTGTTGTCTCTTGACCATGGGTGGAAGGCCATCATTTGCGGAACAGATTCGACGGTTATTCCAGTAGCTCATGTAGTAACGCCAGATAAGCTCTTTTAGCTCTGTTACAGTCATCTTCTCGGTATCATAGCGATCATATAAGAGTTCAGATTTCATTCTCGCCCACATGCTCTCGCAACGAGCATTATCATGGCAACGGCCACCATCACTGTTCATGCTCTGTGTTATATGGCAGTCCTGGACGGCTCTACGGTAGCAATCACTGGTGTACTGTACTCCGCGATCGCTATGGCAGATCGCACCTTCGATCTCCGGGTAAGCCTTATGAGCATTCCTCAGGGTTCGGGCACACAACGGGGCCTTCATGTTGGTAGCCATTGCCAGTCCTAAGACAGCCAGATCGAAGCAGTCAAACAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGGTCCCTCACGGGACCCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGGTCCCTCACGGGACCCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //