Array 1 120065-117629 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEPY01000002.1 Aggregatibacter aphrophilus strain C2008003249 C2008003249_S22_ctg_814, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 120064 32 100.0 35 ................................ TACCGAGCAGAAATTAAATGCTTGTATGAAGTGGA 119997 32 100.0 34 ................................ CATTGAAAGTGTATTCTAATGGCTCCCCATAAGT 119931 32 100.0 34 ................................ CATTTTGCCTTTATCAAAGCCATTACTTTAATTT 119865 32 100.0 35 ................................ TCCATCTCGCGGATAAATACCGCACGGCAGTCAGG 119798 32 100.0 36 ................................ TGCATTGTTTAAGCTGTCTACGGCGGCATAATATTC 119730 32 100.0 34 ................................ CTTCAATGGTAATTTCGGCTACGTAAAAATCTTC 119664 32 100.0 35 ................................ CTCTATCCTAGGGGAGTTCGGTTTACGTATGCAAG 119597 32 100.0 35 ................................ AATATTACCCAAGCTGAGCGCGTCTGCCGCAATTA 119530 32 100.0 37 ................................ TATAATAATTTCAATGGGTTATGGAAAATGCCACTCG 119461 32 100.0 33 ................................ ACAACGACCAAGCCAAGAGTGAGCATTGATTTG 119396 32 100.0 36 ................................ CAACAACTTAATCGCTGGCCAACCAATGGGCGGGAA 119328 32 100.0 34 ................................ CATCAGTACAGATTTTAATCAATTTGATTATTTT 119262 32 100.0 36 ................................ AATTATTGGAAATTATTGGAAAAATGATAGGAAATT 119194 32 100.0 34 ................................ ACCTTTTTGATAAAAATCAATAATTTGCGAACAT 119128 32 100.0 35 ................................ ATCTAATAATTGATATAATTTCCCTCTATTTTTCC 119061 32 100.0 36 ................................ TCGATCGAAGATGTTGATTGGCAAACACTGGAAAAG 118993 32 100.0 35 ................................ TAATACAAAAGGCCCTAGCCTTGTTAGCTTCTTAA 118926 32 100.0 38 ................................ TATTTGAGGGGACAAATTAGGGGACGAAAGGGACGCGA 118856 32 100.0 35 ................................ AAAATGTCCGCTCTATATAGAAGCAATAAGGGGCA 118789 32 100.0 33 ................................ CAGCTATATGGTGGGCGTGCTCTACGCCGGTTG 118724 32 100.0 34 ................................ TTGCGAAGAAAGCAACCAGAACTATGGATAGCCG 118658 32 100.0 34 ................................ AGTCTTGGTAATATTAAGGCTTGGATTAGTAAAG 118592 32 100.0 34 ................................ TTAGTAGCCCCCTCCGCCACCGGTTCCACTGGTA 118526 32 100.0 35 ................................ CTGCATTGTTTAAGCTGTCTACGGCGGCATAATAT 118459 32 100.0 34 ................................ GCTTGATGCTGCTAGCATATCGCGCCAGCCGTAG 118393 32 100.0 36 ................................ CAGCGATATGCAGTTATTGTAACATATTTATCATCT 118325 32 100.0 36 ................................ TTTGCCAACTGATACAGTTGAGGTAGGATTACTTCC 118257 32 100.0 37 ................................ TAAAGGTATCTAATTATTAGAAATTATAGGAAAAATG 118188 32 100.0 33 ................................ AGTTGCTAAATCAGGAATGAGCCGTAAAATGCG 118123 32 100.0 33 ................................ GTTTAAAATTAGAATTAAGTTTTAATATTAGTG 118058 32 100.0 35 ................................ ACGGTCATTTTAGTGATTTTGATGGTGACTGGTAG 117991 32 100.0 33 ................................ TTGCGCGGTTAAAATTAGGTCTAATGTAATTGC 117926 32 100.0 34 ................................ AAACGTGCCGTCTTTATTGAGCCGTACTGCTTCG 117860 32 100.0 35 ................................ TCCTAATTTGTTTTGCAGATCGGTTACTTTGGTTA 117793 32 100.0 34 ................................ CACAATGAAAGAACGCTCTAATTCAGCAAATAAC 117727 32 87.5 35 ......A...T..G.T................ GGCAAAGGCCACGGACAAGCAAAACCGATTGAACG 117660 32 87.5 0 ......A...TT.G.................. | ========== ====== ====== ====== ================================ ====================================== ================== 37 32 99.3 35 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAATGGGCAAGCGCGATTGCGTCGTATCGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGCGATGTCACGCCTGACCAATGGGTCATGTTGAAAAATAAACTGTTGGAAACCTACGACCCTGAAACCGACAGCCTGCGTTTTTATCATTTAGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCAGCAGTGGATGTATTTAAAGACGTGCTTGTTATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGGATAAGTTAATCTATTTGTATAACGGCGGTATGGCCGTTATACTTACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATCTGCTGATTTTTCTTGCTTTTTTTATGTAGGGA # Right flank : AAGATGTCGAGCAAGTCGTGCTCATTTTGTGCGGTGGCAACCACCTTTGGGTGAGTATATATTTTGTCTTTACGAAAAATAAGTGATGTATAAGTTTCAAGCCTTTCTGCAAAAACGTCTGGAAAATCCACCGCACTTTTCTTTCATAAAAATAAAAAGCTGAACCTCTTTCGAGATTCAGCTTTTCTTTTTGGGTTAGATCATTTTAACAGCTCTTTTTGTTGACCTATGCTGAAATATTGTTACATTTTCGGAATTTCAACGCCTGAAGAGAGCAGGTCTTGAATATCCGATTTCAGTACATCAGCTTTTGGCCCATAAATGGCTTGAATGCCTGTGCCTTTAACAATGAAACCCATTGCGCCTGCTTGTTTCCAAGCCGCTGCATCACCCACCAGCTCAGGGTTGTGAACGGTGATACGTAAACGGGTCATACAAGCATCCACCTCGGCAATATTGTTGCGCCCACCGAGAAGATTGATGATTTGCACCACTTGTGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //